FFCP PHASE1:Mm9::chr2:156556442..156556463,+: Difference between revisions
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{{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=36|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr2:156556442..156556463,+|id=chr2:156556442..156556463,+|ontology_enrichment_celltype=CL:0000838!9.38e-08!12;CL:0000988!5.76e-07!32;CL:0002032!5.76e-07!32;CL:0000037!5.76e-07!32;CL:0000566!5.76e-07!32;CL:0000837!5.76e-07!32;CL:0000084!6.09e-07!11;CL:0000827!6.09e-07!11;CL:0000542!6.30e-07!13;CL:0000051!6.30e-07!13;CL:0000738!6.84e-07!17;CL:0002087!6.84e-07!17|ontology_enrichment_celltype_v019_2=CL:0000791,1.02e-11,9;CL:0000789,1.02e-11,9;CL:0002420,1.02e-11,9;CL:0002419,1.02e-11,9;CL:0000790,1.02e-11,9;CL:0000084,1.55e-09,11;CL:0000827,1.55e-09,11;CL:0002031,1.85e-09,25;CL:0000624,9.36e-09,8;CL:0000838,1.02e-08,12;CL:0000738,2.76e-08,17;CL:0002087,2.76e-08,17;CL:0000542,5.06e-08,13;CL:0000051,5.06e-08,13;CL:0000988,3.90e-07,32;CL:0002032,3.90e-07,32;CL:0000037,3.90e-07,32;CL:0000837,3.90e-07,32|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002193!1.09e-16!48;UBERON:0002390!1.17e-15!45;UBERON:0003061!1.17e-15!45;UBERON:0004177!1.26e-13!29;UBERON:0003408!1.50e-11!24;UBERON:0002405!1.84e-11!70;UBERON:0002370!7.77e-11!23;UBERON:0000974!7.77e-11!23;UBERON:0004807!7.77e-11!23;UBERON:0005058!7.77e-11!23;UBERON:0003351!7.77e-11!23;UBERON:0009113!7.77e-11!23;UBERON:0003295!7.77e-11!23;UBERON:0009722!7.77e-11!23;UBERON:0005562!7.77e-11!23;UBERON:0007690!7.77e-11!23;UBERON:0006562!3.91e-10!24;UBERON:0001557!3.91e-10!24;UBERON:0001042!3.91e-10!24;UBERON:0008814!3.91e-10!24;UBERON:0009145!3.91e-10!24;UBERON:0003081!1.36e-08!88;UBERON:0000072!2.31e-08!27;UBERON:0005057!8.77e-08!51;UBERON:0001004!4.09e-07!42|ontology_enrichment_uberon_v019_2=UBERON:0002193,1.84e-15,48;UBERON:0002405,1.84e-15,48;UBERON:0002390,2.49e-14,45;UBERON:0003061,2.49e-14,45;UBERON:0002370,2.58e-12,23;UBERON:0000974,2.58e-12,23;UBERON:0004807,2.58e-12,23;UBERON:0005058,2.58e-12,23;UBERON:0003351,2.58e-12,23;UBERON:0009113,2.58e-12,23;UBERON:0003295,2.58e-12,23;UBERON:0009722,2.58e-12,23;UBERON:0005562,2.58e-12,23;UBERON:0007690,2.58e-12,23;UBERON:0006562,9.59e-12,24;UBERON:0003408,9.59e-12,24;UBERON:0001557,9.59e-12,24;UBERON:0001042,9.59e-12,24;UBERON:0008814,9.59e-12,24;UBERON:0009145,9.59e-12,24;UBERON:0004177,1.02e-11,29;UBERON:0005057,1.02e-11,29;UBERON:0000072,2.74e-10,27;UBERON:0000077,1.97e-09,35;UBERON:0007811,2.24e-07,36;UBERON:0003081,2.72e-07,87|phase1_expression=0,0,0,0,0.500895729946347,0,0,4.13194635013044,0.422366166455,0.70219357896598,0,0,6.50562773738582,5.50748535239684,0,0.202475267389826,0,2.36596624018678,2.33094537129756,0,0,0.0992909512008853,0.522399578277871,0.639969691173627,0,0,0,0,0,0.504060259519861,0.665191531965914,0,0,0,0,0.332469290716985,0,2.09265815368454,0.7813353445238,0.523523743973798,0.588231488031014,2.04913645487534,2.42755176515577,0,0.202753862439029,0,0,0,0,0,0.279972843250725,0,0.838913030288682,3.62681071005672,3.02484419228218,0,0,0,0,0,0,0,0.889294796111139,0.899899717281399,0,1.4209602298922,0,0.384218305321555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.579728977403356,0,0,0,0,0,0.561777680527007,0,0,0,0.14084341977668,0,0,0,0,0,0,0.34255163915718,2.07150306917737,0.29688427812965,0,0,0,0,0,0,0,0,0,0.161766849947409,0.441683036920787,0,0,0,0,0.510914110417183,0.11981512450592,0,0.635351135365324,0,0,0,0,0,0,0,0,0.248813941220186,0.252722758433675,0,0,0,0,0.150704817835715,0,0,0,0,0,0,0,0,0,0,0,0,0.702213187313235,0.257347907114715,0,0,0,0,0.23674473558521,0,0,0,0,0,0,0,0,0,0,0,0,0.102904612379284,0,0,0,0,0,0,0.22237804384487,0,0,0,0,0,0.19496408711912,0,0.432276099749388,0,0,0.114248512609729,0,0,0,0,0,0,0,0,0,0.166845105716094,0,0,0,0,0,0,0.162135226775035,0.274561413188081,0,0.372140947668503,0,0,0,0,0.554259570499814,0,0,0,0,0,0,0,0,0,0.159454768657487,0.163863314715738,0.172684981865896,0.144649058581512,0,1.08781136763742,0,0.275936746304732,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.425820255624806,0,0.162886959353576,0,0,0,0,0,0,0,0,0.363533729477506,0,0,0,0,0.340439605753788,0,0,0,0,0,0,0,0,0.42366414172764,0.441056796109924,0,0,0.0603129249281559,0,0,0,0,1.36696704638282,0,0.370389054739423,0.565105371014073,0.546776910884101,0.686334519619568,0.339956859987711,1.11961161858926,0.690999869022119,0,0,0,0,0,0,0,0.0826534557253359,0,0.388844919875379,0.621339313086926,0,0,0,0,0,0,0,0,0,0,0,2.8441000856536,0,0.616265742988964,1.03936658382236,1.07416017400489,0.79472541912506,1.32214994471966,1.18151621739662,0.706765149637033,0.990688486514998,0.705783295957884,0.974578807397524,1.6356013078856,1.63627663054197,0,0.443971906748129,0.448569283047378,0,0.19318959403219,0.187682475451182,0.183151624267265,0.428736758158132,1.50471631210609,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183843508450014,0,0,0,0,0,0.188626341386076,0,0,0,0,0,0,0.412085900803307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p@chr2:156556442..156556463,+}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=36 | |||
|TSSclassifier=NA | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr2:156556442..156556463,+ | |||
|description=CAGE_peak_at_chr2:156556442..156556463,+ | |||
|id=chr2:156556442..156556463,+ | |||
|ontology_enrichment_celltype=CL:0000838!9.38e-08!12;CL:0000988!5.76e-07!32;CL:0002032!5.76e-07!32;CL:0000037!5.76e-07!32;CL:0000566!5.76e-07!32;CL:0000837!5.76e-07!32;CL:0000084!6.09e-07!11;CL:0000827!6.09e-07!11;CL:0000542!6.30e-07!13;CL:0000051!6.30e-07!13;CL:0000738!6.84e-07!17;CL:0002087!6.84e-07!17 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,1.02e-11,9;CL:0000789,1.02e-11,9;CL:0002420,1.02e-11,9;CL:0002419,1.02e-11,9;CL:0000790,1.02e-11,9;CL:0000084,1.55e-09,11;CL:0000827,1.55e-09,11;CL:0002031,1.85e-09,25;CL:0000624,9.36e-09,8;CL:0000838,1.02e-08,12;CL:0000738,2.76e-08,17;CL:0002087,2.76e-08,17;CL:0000542,5.06e-08,13;CL:0000051,5.06e-08,13;CL:0000988,3.90e-07,32;CL:0002032,3.90e-07,32;CL:0000037,3.90e-07,32;CL:0000837,3.90e-07,32 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!1.09e-16!48;UBERON:0002390!1.17e-15!45;UBERON:0003061!1.17e-15!45;UBERON:0004177!1.26e-13!29;UBERON:0003408!1.50e-11!24;UBERON:0002405!1.84e-11!70;UBERON:0002370!7.77e-11!23;UBERON:0000974!7.77e-11!23;UBERON:0004807!7.77e-11!23;UBERON:0005058!7.77e-11!23;UBERON:0003351!7.77e-11!23;UBERON:0009113!7.77e-11!23;UBERON:0003295!7.77e-11!23;UBERON:0009722!7.77e-11!23;UBERON:0005562!7.77e-11!23;UBERON:0007690!7.77e-11!23;UBERON:0006562!3.91e-10!24;UBERON:0001557!3.91e-10!24;UBERON:0001042!3.91e-10!24;UBERON:0008814!3.91e-10!24;UBERON:0009145!3.91e-10!24;UBERON:0003081!1.36e-08!88;UBERON:0000072!2.31e-08!27;UBERON:0005057!8.77e-08!51;UBERON:0001004!4.09e-07!42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,1.84e-15,48;UBERON:0002405,1.84e-15,48;UBERON:0002390,2.49e-14,45;UBERON:0003061,2.49e-14,45;UBERON:0002370,2.58e-12,23;UBERON:0000974,2.58e-12,23;UBERON:0004807,2.58e-12,23;UBERON:0005058,2.58e-12,23;UBERON:0003351,2.58e-12,23;UBERON:0009113,2.58e-12,23;UBERON:0003295,2.58e-12,23;UBERON:0009722,2.58e-12,23;UBERON:0005562,2.58e-12,23;UBERON:0007690,2.58e-12,23;UBERON:0006562,9.59e-12,24;UBERON:0003408,9.59e-12,24;UBERON:0001557,9.59e-12,24;UBERON:0001042,9.59e-12,24;UBERON:0008814,9.59e-12,24;UBERON:0009145,9.59e-12,24;UBERON:0004177,1.02e-11,29;UBERON:0005057,1.02e-11,29;UBERON:0000072,2.74e-10,27;UBERON:0000077,1.97e-09,35;UBERON:0007811,2.24e-07,36;UBERON:0003081,2.72e-07,87 | |||
|phase1_expression=0,0,0,0,0.500895729946347,0,0,4.13194635013044,0.422366166455,0.70219357896598,0,0,6.50562773738582,5.50748535239684,0,0.202475267389826,0,2.36596624018678,2.33094537129756,0,0,0.0992909512008853,0.522399578277871,0.639969691173627,0,0,0,0,0,0.504060259519861,0.665191531965914,0,0,0,0,0.332469290716985,0,2.09265815368454,0.7813353445238,0.523523743973798,0.588231488031014,2.04913645487534,2.42755176515577,0,0.202753862439029,0,0,0,0,0,0.279972843250725,0,0.838913030288682,3.62681071005672,3.02484419228218,0,0,0,0,0,0,0,0.889294796111139,0.899899717281399,0,1.4209602298922,0,0.384218305321555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.579728977403356,0,0,0,0,0,0.561777680527007,0,0,0,0.14084341977668,0,0,0,0,0,0,0.34255163915718,2.07150306917737,0.29688427812965,0,0,0,0,0,0,0,0,0,0.161766849947409,0.441683036920787,0,0,0,0,0.510914110417183,0.11981512450592,0,0.635351135365324,0,0,0,0,0,0,0,0,0.248813941220186,0.252722758433675,0,0,0,0,0.150704817835715,0,0,0,0,0,0,0,0,0,0,0,0,0.702213187313235,0.257347907114715,0,0,0,0,0.23674473558521,0,0,0,0,0,0,0,0,0,0,0,0,0.102904612379284,0,0,0,0,0,0,0.22237804384487,0,0,0,0,0,0.19496408711912,0,0.432276099749388,0,0,0.114248512609729,0,0,0,0,0,0,0,0,0,0.166845105716094,0,0,0,0,0,0,0.162135226775035,0.274561413188081,0,0.372140947668503,0,0,0,0,0.554259570499814,0,0,0,0,0,0,0,0,0,0.159454768657487,0.163863314715738,0.172684981865896,0.144649058581512,0,1.08781136763742,0,0.275936746304732,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.425820255624806,0,0.162886959353576,0,0,0,0,0,0,0,0,0.363533729477506,0,0,0,0,0.340439605753788,0,0,0,0,0,0,0,0,0.42366414172764,0.441056796109924,0,0,0.0603129249281559,0,0,0,0,1.36696704638282,0,0.370389054739423,0.565105371014073,0.546776910884101,0.686334519619568,0.339956859987711,1.11961161858926,0.690999869022119,0,0,0,0,0,0,0,0.0826534557253359,0,0.388844919875379,0.621339313086926,0,0,0,0,0,0,0,0,0,0,0,2.8441000856536,0,0.616265742988964,1.03936658382236,1.07416017400489,0.79472541912506,1.32214994471966,1.18151621739662,0.706765149637033,0.990688486514998,0.705783295957884,0.974578807397524,1.6356013078856,1.63627663054197,0,0.443971906748129,0.448569283047378,0,0.19318959403219,0.187682475451182,0.183151624267265,0.428736758158132,1.50471631210609,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183843508450014,0,0,0,0,0,0.188626341386076,0,0,0,0,0,0,0.412085900803307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr2:156556442..156556463,+ | |||
}} |
Latest revision as of 09:07, 4 August 2015
Short description: | p@chr2:156556442..156556463, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr2:156556442..156556463, + |
Coexpression cluster: | MCL_coexpression_mm9:36 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 1.02e-11 | 9 |
alpha-beta T cell | 1.02e-11 | 9 |
immature T cell | 1.02e-11 | 9 |
mature T cell | 1.02e-11 | 9 |
immature alpha-beta T cell | 1.02e-11 | 9 |
T cell | 1.55e-09 | 11 |
pro-T cell | 1.55e-09 | 11 |
hematopoietic lineage restricted progenitor cell | 1.85e-09 | 25 |
CD4-positive, alpha-beta T cell | 9.36e-09 | 8 |
lymphoid lineage restricted progenitor cell | 1.02e-08 | 12 |
leukocyte | 2.76e-08 | 17 |
nongranular leukocyte | 2.76e-08 | 17 |
lymphocyte | 5.06e-08 | 13 |
common lymphoid progenitor | 5.06e-08 | 13 |
hematopoietic cell | 3.90e-07 | 32 |
hematopoietic oligopotent progenitor cell | 3.90e-07 | 32 |
hematopoietic stem cell | 3.90e-07 | 32 |
hematopoietic multipotent progenitor cell | 3.90e-07 | 32 |
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 1.84e-15 | 48 |
immune system | 1.84e-15 | 48 |
hematopoietic system | 2.49e-14 | 45 |
blood island | 2.49e-14 | 45 |
thymus | 2.58e-12 | 23 |
neck | 2.58e-12 | 23 |
respiratory system epithelium | 2.58e-12 | 23 |
hemolymphoid system gland | 2.58e-12 | 23 |
pharyngeal epithelium | 2.58e-12 | 23 |
thymic region | 2.58e-12 | 23 |
pharyngeal gland | 2.58e-12 | 23 |
entire pharyngeal arch endoderm | 2.58e-12 | 23 |
thymus primordium | 2.58e-12 | 23 |
early pharyngeal endoderm | 2.58e-12 | 23 |
pharynx | 9.59e-12 | 24 |
gland of gut | 9.59e-12 | 24 |
upper respiratory tract | 9.59e-12 | 24 |
chordate pharynx | 9.59e-12 | 24 |
pharyngeal arch system | 9.59e-12 | 24 |
pharyngeal region of foregut | 9.59e-12 | 24 |
hemopoietic organ | 1.02e-11 | 29 |
immune organ | 1.02e-11 | 29 |
segment of respiratory tract | 2.74e-10 | 27 |
mixed endoderm/mesoderm-derived structure | 1.97e-09 | 35 |
craniocervical region | 2.24e-07 | 36 |
lateral plate mesoderm | 2.72e-07 | 87 |