FFCP PHASE1:Mm9::chr17:25570208..25570252,-: Difference between revisions
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{{FFCP|EntrezGene=58226|HGNC=|MCL_coexpression_id=295|UniProt=E9Q6E4|association_with_transcript=0bp_to_ENSMUST00000159623_5end|description=CAGE_peak_3_at_Cacna1h_5end|id=chr17:25570208..25570252,-|ontology_enrichment_celltype=CL:0000117!1.48e-10!23;CL:0000337!1.48e-10!23|ontology_enrichment_celltype_v019_2=CL:0000117,3.01e-12,23;CL:0000337,3.01e-12,23;CL:0002609,1.38e-08,6;CL:0000540,6.81e-07,33;CL:0000047,6.81e-07,33;CL:0000031,6.81e-07,33;CL:0000404,6.81e-07,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0003056!4.28e-15!49;UBERON:0002346!9.35e-15!71;UBERON:0003075!9.35e-15!71;UBERON:0007284!9.35e-15!71;UBERON:0002020!2.47e-12!34;UBERON:0002780!7.65e-12!39;UBERON:0001890!7.65e-12!39;UBERON:0006240!7.65e-12!39;UBERON:0003080!9.02e-12!40;UBERON:0000033!9.05e-12!63;UBERON:0001049!4.43e-11!52;UBERON:0005068!4.43e-11!52;UBERON:0006241!4.43e-11!52;UBERON:0007135!4.43e-11!52;UBERON:0002791!2.24e-10!29;UBERON:0003528!2.24e-10!29;UBERON:0001893!2.24e-10!29;UBERON:0004121!4.41e-10!102;UBERON:0000924!4.41e-10!102;UBERON:0006601!4.41e-10!102;UBERON:0000955!2.25e-09!50;UBERON:0006238!2.25e-09!50;UBERON:0001017!5.65e-09!73;UBERON:0005743!5.65e-09!73;UBERON:0000073!5.86e-09!75;UBERON:0001016!5.86e-09!75;UBERON:0002616!8.38e-09!49;UBERON:0000468!3.52e-07!333;UBERON:0000956!6.87e-07!21;UBERON:0001869!6.87e-07!21;UBERON:0000203!6.87e-07!21|ontology_enrichment_uberon_v019_2=UBERON:0002020,5.79e-15,34;UBERON:0003528,8.61e-14,29;UBERON:0002791,8.61e-14,29;UBERON:0001893,8.61e-14,29;UBERON:0003056,6.20e-13,49;UBERON:0002780,2.10e-11,39;UBERON:0001890,2.10e-11,39;UBERON:0006240,2.10e-11,39;UBERON:0003080,6.28e-11,40;UBERON:0002346,1.81e-10,64;UBERON:0003075,1.81e-10,64;UBERON:0007284,1.81e-10,64;UBERON:0000956,1.08e-09,21;UBERON:0001869,1.08e-09,21;UBERON:0000203,1.08e-09,21;UBERON:0000073,1.53e-09,54;UBERON:0001049,1.91e-09,52;UBERON:0005068,1.91e-09,52;UBERON:0006241,1.91e-09,52;UBERON:0007135,1.91e-09,52;UBERON:0000955,2.56e-09,47;UBERON:0006238,2.56e-09,47;UBERON:0010314,3.98e-09,92;UBERON:0002616,1.54e-08,46;UBERON:0001017,5.26e-08,73;UBERON:0010371,5.30e-08,73;UBERON:0001016,1.51e-07,75;UBERON:0004121,4.06e-07,95;UBERON:0000924,4.06e-07,95;UBERON:0006601,4.06e-07,95;UBERON:0000369,4.87e-07,5;UBERON:0002435,4.87e-07,5;UBERON:0000204,4.87e-07,5;UBERON:0010082,4.87e-07,5|phase1_expression=0.480446541314382,0,0,0,0,0.16787927191189,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.850432901510698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.101376931219515,0,0,0,0,0,0,0,0,0,0,0,0,0,5.86717736492834,5.81890077199236,3.1691570175309,0,0,0,0,0,0,0.384218305321555,6.32506635081714,9.45041568321835,6.30974884054146,1.99955689082663,0.662605622854841,8.08439274818697,7.57179221044067,9.19218786610021,0,1.14918604276669,0.46081959976873,5.67111037239834,4.11694396210843,4.68822033501084,0.558365998002762,0.56276261003168,1.5279824777681,1.76777151284201,0.996601765593721,5.77838282058432,0.227178579999552,0.453429360640713,0,0,0,0,0,0,0.140444420131752,0,0,0,0.281686839553361,0,0,0,0,0,0,0.11418387971906,0,1.92974780784272,1.21439728736295,1.52232739156071,0.461230994512117,0.301445281105245,0.470354828542819,1.63366568728578,0,0,0.884610551949874,0.970601099684455,0,0,0,0,0,0.510914110417183,0,0,0,0.449371918214468,6.8625090422794,17.0889918873496,1.56441888173049,1.53429274398198,0.62336413367868,3.0825839982874,0.407357455401265,0,0.252722758433675,0.841767423545896,0.910843100738926,0.459804208866946,0.720248519221397,1.9591626318643,5.8511389270142,4.99643509110914,6.1843138209421,1.55222022443409,0.431135985865684,1.13463648100692,1.05570674498369,1.31517439456545,0,0,0.205782136407943,1.19420560091096,0,0,0,2.27838349789052,1.64168241986767,0.720248245844059,0.946978942340841,0.787056926989615,0.617068451549513,0.930135779001631,1.07309360559848,0.934122738937356,0.658239399653922,1.14917224855367,0.56748166682099,0.877199924551994,0.878200461164203,0.671032093801859,6.72927835405207,11.0107935245834,0,0.264450566663544,0.853153002140936,2.78684006232526,1.15980715189884,1.00841762311671,0.889512175379481,0.570676878337677,1.42358718463353,0.164698954724011,0,0.596869416123452,0.38992817423824,0,0.432276099749388,0.597423819763102,0,0.685491075658373,0,0,0,0.140271639780637,0.126473074248515,0.147610147979602,0,0.123397163921801,0,0,0.196558995113203,0,0.405720242777006,0,0,0,0,0,0,0,0,0,0,0,0,0.757965647081939,0.814824882210129,0.509235257325564,0.469380496577004,0.167506257441816,0,0.195133647857799,0,0,0,0,0,0.144649058581512,0,0,0,0,0.481651769963376,0.117211686592203,0,0.252470927204373,0,0,0.215423397732799,0.238968797952552,0.445597348164788,0,0,0,0.395287777946524,9.96096080907602,0.141940085208269,0.534196811001766,0.81443479676788,0.494910368917606,0,0.485561272309963,0.604647113929502,0.188605079755898,0.295301892880773,0,0.516856586336442,0.363533729477506,0,0,0,0,0.680879211507576,1.08036656418786,0.776152102696527,1.07168517515796,0.354680467284547,0.356737635204141,0.82274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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:58226 | |||
|HGNC= | |||
|MCL_coexpression_id=295 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:E9Q6E4 | |||
|association_with_transcript=0bp_to_ENSMUST00000159623_5end | |||
|cluster_id=chr17:25570208..25570252,- | |||
|description=CAGE_peak_3_at_Cacna1h_5end | |||
|id=chr17:25570208..25570252,- | |||
|ontology_enrichment_celltype=CL:0000117!1.48e-10!23;CL:0000337!1.48e-10!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,3.01e-12,23;CL:0000337,3.01e-12,23;CL:0002609,1.38e-08,6;CL:0000540,6.81e-07,33;CL:0000047,6.81e-07,33;CL:0000031,6.81e-07,33;CL:0000404,6.81e-07,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003056!4.28e-15!49;UBERON:0002346!9.35e-15!71;UBERON:0003075!9.35e-15!71;UBERON:0007284!9.35e-15!71;UBERON:0002020!2.47e-12!34;UBERON:0002780!7.65e-12!39;UBERON:0001890!7.65e-12!39;UBERON:0006240!7.65e-12!39;UBERON:0003080!9.02e-12!40;UBERON:0000033!9.05e-12!63;UBERON:0001049!4.43e-11!52;UBERON:0005068!4.43e-11!52;UBERON:0006241!4.43e-11!52;UBERON:0007135!4.43e-11!52;UBERON:0002791!2.24e-10!29;UBERON:0003528!2.24e-10!29;UBERON:0001893!2.24e-10!29;UBERON:0004121!4.41e-10!102;UBERON:0000924!4.41e-10!102;UBERON:0006601!4.41e-10!102;UBERON:0000955!2.25e-09!50;UBERON:0006238!2.25e-09!50;UBERON:0001017!5.65e-09!73;UBERON:0005743!5.65e-09!73;UBERON:0000073!5.86e-09!75;UBERON:0001016!5.86e-09!75;UBERON:0002616!8.38e-09!49;UBERON:0000468!3.52e-07!333;UBERON:0000956!6.87e-07!21;UBERON:0001869!6.87e-07!21;UBERON:0000203!6.87e-07!21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002020,5.79e-15,34;UBERON:0003528,8.61e-14,29;UBERON:0002791,8.61e-14,29;UBERON:0001893,8.61e-14,29;UBERON:0003056,6.20e-13,49;UBERON:0002780,2.10e-11,39;UBERON:0001890,2.10e-11,39;UBERON:0006240,2.10e-11,39;UBERON:0003080,6.28e-11,40;UBERON:0002346,1.81e-10,64;UBERON:0003075,1.81e-10,64;UBERON:0007284,1.81e-10,64;UBERON:0000956,1.08e-09,21;UBERON:0001869,1.08e-09,21;UBERON:0000203,1.08e-09,21;UBERON:0000073,1.53e-09,54;UBERON:0001049,1.91e-09,52;UBERON:0005068,1.91e-09,52;UBERON:0006241,1.91e-09,52;UBERON:0007135,1.91e-09,52;UBERON:0000955,2.56e-09,47;UBERON:0006238,2.56e-09,47;UBERON:0010314,3.98e-09,92;UBERON:0002616,1.54e-08,46;UBERON:0001017,5.26e-08,73;UBERON:0010371,5.30e-08,73;UBERON:0001016,1.51e-07,75;UBERON:0004121,4.06e-07,95;UBERON:0000924,4.06e-07,95;UBERON:0006601,4.06e-07,95;UBERON:0000369,4.87e-07,5;UBERON:0002435,4.87e-07,5;UBERON:0000204,4.87e-07,5;UBERON:0010082,4.87e-07,5 | |||
|phase1_expression=0.480446541314382,0,0,0,0,0.16787927191189,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.850432901510698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.101376931219515,0,0,0,0,0,0,0,0,0,0,0,0,0,5.86717736492834,5.81890077199236,3.1691570175309,0,0,0,0,0,0,0.384218305321555,6.32506635081714,9.45041568321835,6.30974884054146,1.99955689082663,0.662605622854841,8.08439274818697,7.57179221044067,9.19218786610021,0,1.14918604276669,0.46081959976873,5.67111037239834,4.11694396210843,4.68822033501084,0.558365998002762,0.56276261003168,1.5279824777681,1.76777151284201,0.996601765593721,5.77838282058432,0.227178579999552,0.453429360640713,0,0,0,0,0,0,0.140444420131752,0,0,0,0.281686839553361,0,0,0,0,0,0,0.11418387971906,0,1.92974780784272,1.21439728736295,1.52232739156071,0.461230994512117,0.301445281105245,0.470354828542819,1.63366568728578,0,0,0.884610551949874,0.970601099684455,0,0,0,0,0,0.510914110417183,0,0,0,0.449371918214468,6.8625090422794,17.0889918873496,1.56441888173049,1.53429274398198,0.62336413367868,3.0825839982874,0.407357455401265,0,0.252722758433675,0.841767423545896,0.910843100738926,0.459804208866946,0.720248519221397,1.9591626318643,5.8511389270142,4.99643509110914,6.1843138209421,1.55222022443409,0.431135985865684,1.13463648100692,1.05570674498369,1.31517439456545,0,0,0.205782136407943,1.19420560091096,0,0,0,2.27838349789052,1.64168241986767,0.720248245844059,0.946978942340841,0.787056926989615,0.617068451549513,0.930135779001631,1.07309360559848,0.934122738937356,0.658239399653922,1.14917224855367,0.56748166682099,0.877199924551994,0.878200461164203,0.671032093801859,6.72927835405207,11.0107935245834,0,0.264450566663544,0.853153002140936,2.78684006232526,1.15980715189884,1.00841762311671,0.889512175379481,0.570676878337677,1.42358718463353,0.164698954724011,0,0.596869416123452,0.38992817423824,0,0.432276099749388,0.597423819763102,0,0.685491075658373,0,0,0,0.140271639780637,0.126473074248515,0.147610147979602,0,0.123397163921801,0,0,0.196558995113203,0,0.405720242777006,0,0,0,0,0,0,0,0,0,0,0,0,0.757965647081939,0.814824882210129,0.509235257325564,0.469380496577004,0.167506257441816,0,0.195133647857799,0,0,0,0,0,0.144649058581512,0,0,0,0,0.481651769963376,0.117211686592203,0,0.252470927204373,0,0,0.215423397732799,0.238968797952552,0.445597348164788,0,0,0,0.395287777946524,9.96096080907602,0.141940085208269,0.534196811001766,0.81443479676788,0.494910368917606,0,0.485561272309963,0.604647113929502,0.188605079755898,0.295301892880773,0,0.516856586336442,0.363533729477506,0,0,0,0,0.680879211507576,1.08036656418786,0.776152102696527,1.07168517515796,0.354680467284547,0.356737635204141,0.822745103010605,0.913394847343798,0,0,0,0,0,0.120625849856312,0,0,0.874442509889552,0.927126510052548,0.170870880797853,0.206386867963223,0,0,0,0,0,0,0,0,1.89801596148681,0.609958401380546,1.18805874903981,0,0,0.404593039154462,0.826534557253359,0.26175594198403,1.16653475962614,0,0,1.79419855252775,0.992750942742586,1.55560950675238,0.645799117388655,0.506868376472335,0.821500670520278,0.13020438484395,0.104859344425711,0.483168241652012,0.288030006257865,0,0,0.205421914329655,0,0,0,0,0,0.100966449948148,0.0762068066549998,0,0,0.192423683280659,0,0.226730383615211,0,0,0,5.21611903886914,0.750729901804728,0.549454872801795,0.214368379079066,0.501572104035363,2.82375921308533,0.460325236507177,1.14579102687879,1.71853182343688,0.685082519770642,0,2.70009000092722,1.35096360967266,0.453142408984205,1.03552062350364,0.103787347584177,2.39414924040619,2.04880326904961,2.18796045361465,1.67690530102386,1.10306105070008,1.77797382241292,3.09052585858341,0.962757628775446,0.758091635291392,1.2673964994512,0.754505365544305,1.49826411951812,1.28050304809739,1.43588672389033,1.42888107384922,1.97003354106254,1.73618298417335,1.23625770240992,1.17759136107518,0.342869252385415,1.06485483695602,1.1921809497366,1.0174249164263,1.03520318456864,1.09998990259179,1.28049581010941,1.05227884575137,1.49384525230448,0,2.13543032623513,1.18205378850676,0.818462086339379,1.54936841185966,1.73615949883027,3.49734809113124,1.16965804222704,1.28922632428979,0.956441660344217,0.220591419119515,0.231867835620421 | |||
|short_description=p3@Cacna1h | |||
}} |
Revision as of 11:07, 4 August 2015
Short description: | p3@Cacna1h |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Cacna1h_5end |
Coexpression cluster: | MCL_coexpression_mm9:295 |
Association with transcript: | 0bp_to_ENSMUST00000159623_5end |
EntrezGene: | 58226 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 3.01e-12 | 23 |
neuroblast (sensu Vertebrata) | 3.01e-12 | 23 |
neuron of cerebral cortex | 1.38e-08 | 6 |
neuron | 6.81e-07 | 33 |
neuronal stem cell | 6.81e-07 | 33 |
neuroblast | 6.81e-07 | 33 |
electrically signaling cell | 6.81e-07 | 33 |
Ontology term | p-value | n |
---|---|---|
gray matter | 5.79e-15 | 34 |
brain grey matter | 8.61e-14 | 29 |
regional part of telencephalon | 8.61e-14 | 29 |
telencephalon | 8.61e-14 | 29 |
pre-chordal neural plate | 6.20e-13 | 49 |
regional part of forebrain | 2.10e-11 | 39 |
forebrain | 2.10e-11 | 39 |
future forebrain | 2.10e-11 | 39 |
anterior neural tube | 6.28e-11 | 40 |
neurectoderm | 1.81e-10 | 64 |
neural plate | 1.81e-10 | 64 |
presumptive neural plate | 1.81e-10 | 64 |
cerebral cortex | 1.08e-09 | 21 |
cerebral hemisphere | 1.08e-09 | 21 |
pallium | 1.08e-09 | 21 |
regional part of nervous system | 1.53e-09 | 54 |
neural tube | 1.91e-09 | 52 |
neural rod | 1.91e-09 | 52 |
future spinal cord | 1.91e-09 | 52 |
neural keel | 1.91e-09 | 52 |
brain | 2.56e-09 | 47 |
future brain | 2.56e-09 | 47 |
structure with developmental contribution from neural crest | 3.98e-09 | 92 |
regional part of brain | 1.54e-08 | 46 |
central nervous system | 5.26e-08 | 73 |
ecto-epithelium | 5.30e-08 | 73 |
nervous system | 1.51e-07 | 75 |
ectoderm-derived structure | 4.06e-07 | 95 |
ectoderm | 4.06e-07 | 95 |
presumptive ectoderm | 4.06e-07 | 95 |
corpus striatum | 4.87e-07 | 5 |
striatum | 4.87e-07 | 5 |
ventral part of telencephalon | 4.87e-07 | 5 |
future corpus striatum | 4.87e-07 | 5 |