FFCP PHASE1:Mm9::chr19:6932669..6932708,-: Difference between revisions
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{{FFCP|EntrezGene=78317|HGNC=|MCL_coexpression_id=36|UniProt=E9Q8T5,Q4QRL3|association_with_transcript=0bp_to_ENSMUST00000080351,ENSMUST00000113440,NM_001081291,uc008gjb.1_5end|description=CAGE_peak_1_at_Ccdc88b_5end|id=chr19:6932669..6932708,-|ontology_enrichment_celltype=CL:0000738!2.35e-09!17;CL:0002087!2.35e-09!17;CL:0000988!6.66e-09!32;CL:0002032!6.66e-09!32;CL:0000037!6.66e-09!32;CL:0000566!6.66e-09!32;CL:0000837!6.66e-09!32;CL:0000838!5.77e-08!12;CL:0000084!6.51e-08!11;CL:0000827!6.51e-08!11;CL:0002031!2.46e-07!25;CL:0000542!2.60e-07!13;CL:0000051!2.60e-07!13;CL:0000791!6.46e-07!9;CL:0000789!6.46e-07!9;CL:0002420!6.46e-07!9;CL:0002419!6.46e-07!9;CL:0000790!6.46e-07!9|ontology_enrichment_celltype_v019_2=CL:0000988,1.13e-09,32;CL:0002032,1.13e-09,32;CL:0000037,1.13e-09,32;CL:0000837,1.13e-09,32;CL:0000738,1.21e-09,17;CL:0002087,1.21e-09,17;CL:0000838,3.34e-08,12;CL:0000084,3.79e-08,11;CL:0000827,3.79e-08,11;CL:0002031,4.73e-08,25;CL:0000542,1.59e-07,13;CL:0000051,1.59e-07,13;CL:0000791,4.09e-07,9;CL:0000789,4.09e-07,9;CL:0002420,4.09e-07,9;CL:0002419,4.09e-07,9;CL:0000790,4.09e-07,9|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002193!2.96e-18!48;UBERON:0002405!1.79e-17!70;UBERON:0002390!8.40e-17!45;UBERON:0003061!8.40e-17!45;UBERON:0004177!7.05e-11!29;UBERON:0005057!3.44e-10!51;UBERON:0003408!1.32e-08!24;UBERON:0002370!1.95e-08!23;UBERON:0000974!1.95e-08!23;UBERON:0004807!1.95e-08!23;UBERON:0005058!1.95e-08!23;UBERON:0003351!1.95e-08!23;UBERON:0009113!1.95e-08!23;UBERON:0003295!1.95e-08!23;UBERON:0009722!1.95e-08!23;UBERON:0005562!1.95e-08!23;UBERON:0007690!1.95e-08!23;UBERON:0001007!5.07e-08!128;UBERON:0001555!5.07e-08!128;UBERON:0007026!5.07e-08!128;UBERON:0004119!5.77e-08!130;UBERON:0000925!5.77e-08!130;UBERON:0006595!5.77e-08!130;UBERON:0006562!5.83e-08!24;UBERON:0001557!5.83e-08!24;UBERON:0001042!5.83e-08!24;UBERON:0008814!5.83e-08!24;UBERON:0009145!5.83e-08!24;UBERON:0004921!2.05e-07!126;UBERON:0004185!2.05e-07!126;UBERON:0005911!2.90e-07!69;UBERON:0003081!4.65e-07!88;UBERON:0002371!8.33e-07!16|ontology_enrichment_uberon_v019_2=UBERON:0002193,1.71e-19,48;UBERON:0002405,1.71e-19,48;UBERON:0002390,5.63e-18,45;UBERON:0003061,5.63e-18,45;UBERON:0004177,8.27e-12,29;UBERON:0005057,8.27e-12,29;UBERON:0001007,1.13e-09,116;UBERON:0001555,1.13e-09,116;UBERON:0007026,1.13e-09,116;UBERON:0004119,1.38e-09,118;UBERON:0000925,1.38e-09,118;UBERON:0006595,1.38e-09,118;UBERON:0000077,1.65e-09,35;UBERON:0003408,1.99e-09,24;UBERON:0002370,2.95e-09,23;UBERON:0000974,2.95e-09,23;UBERON:0004807,2.95e-09,23;UBERON:0005058,2.95e-09,23;UBERON:0003351,2.95e-09,23;UBERON:0009113,2.95e-09,23;UBERON:0003295,2.95e-09,23;UBERON:0009722,2.95e-09,23;UBERON:0005562,2.95e-09,23;UBERON:0007690,2.95e-09,23;UBERON:0004921,5.56e-09,114;UBERON:0006562,9.82e-09,24;UBERON:0001557,9.82e-09,24;UBERON:0001042,9.82e-09,24;UBERON:0008814,9.82e-09,24;UBERON:0009145,9.82e-09,24;UBERON:0001041,3.85e-08,80;UBERON:0005911,1.07e-07,69;UBERON:0003929,3.40e-07,55;UBERON:0002371,5.32e-07,16|phase1_expression=0.480446541314382,19.8915982354436,27.2999543633722,0,0,24.8461322429597,29.6688053556318,39.1243670027976,48.572109142325,62.2611640016503,50.166864690073,63.3390942422971,49.3058102201872,54.2006494997784,6.32908547449759,7.08663435864391,2.09868563438444,7.41336088591859,9.1866670515845,6.36584477697045,3.14660173558958,36.2411971883231,32.9111734315059,19.5190755807956,16.7468775179034,35.6023817751313,25.8457197695445,28.6576739472232,1.90023419456374,1.51218077855958,21.7295900442199,0,0,0,0.866554859253824,0,0,133.93012183581,46.0987853269042,96.3283688911789,146.469640519723,137.975187961606,153.906781910876,0,0,0,0,0,0,0,0,0,4.86569557567435,95.7478027454975,97.803295550457,0.514518872071894,1.43266719969378,1.03134418455488,0.606949382578793,0,0,0,0,35.995988691256,56.3653826663175,46.1812074714965,19.7736072942147,12.2949857702897,0.414758449233911,0.135005938331691,0.210324961351382,0.856952953211411,0.662605622854841,0.734944795289724,0.0958454710182364,0,0,0.638436690425939,1.22885226604995,0,0,0,1.3959149950069,1.68828783009504,0.763991238884051,0.589257170947335,0.569486723196412,0,1.59025005999687,0,0,0.860423876981386,0,0,1.94932925234301,1.34408066129201,5.89866564553358,0,0,0,0,0,0,0,0,0,0,3.65388415100992,31.5904218049549,3.56261133755579,1.04091196059682,1.82679286987285,1.84492397804847,0.904335843315735,1.17588707135705,1.25666591329675,0.247194967734374,2.74738778147832,52.1920225650426,5.3383060482645,11.2629174414801,9.21262980956922,1.86391761218122,0.585561594023094,0.209446706813455,8.68553987709211,8.14742846640258,12.5979573508616,12.0716715719411,0.898743836428936,3.20250421973039,0.125654352112864,1.73824320192276,1.27857728665165,1.87009240103604,1.78465389374533,1.12023300235348,15.5508713262616,1.0108910337347,1.68353484709179,0.390361328888111,0.459804208866946,1.0803727788321,0.60281927134286,0.340182495756639,0.768682321709099,0.749613796477831,0.51740674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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:78317 | |||
|HGNC= | |||
|MCL_coexpression_id=36 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:E9Q8T5,uniprot:Q4QRL3 | |||
|association_with_transcript=0bp_to_ENSMUST00000080351,ENSMUST00000113440,NM_001081291,uc008gjb.1_5end | |||
|cluster_id=chr19:6932669..6932708,- | |||
|description=CAGE_peak_1_at_Ccdc88b_5end | |||
|id=chr19:6932669..6932708,- | |||
|ontology_enrichment_celltype=CL:0000738!2.35e-09!17;CL:0002087!2.35e-09!17;CL:0000988!6.66e-09!32;CL:0002032!6.66e-09!32;CL:0000037!6.66e-09!32;CL:0000566!6.66e-09!32;CL:0000837!6.66e-09!32;CL:0000838!5.77e-08!12;CL:0000084!6.51e-08!11;CL:0000827!6.51e-08!11;CL:0002031!2.46e-07!25;CL:0000542!2.60e-07!13;CL:0000051!2.60e-07!13;CL:0000791!6.46e-07!9;CL:0000789!6.46e-07!9;CL:0002420!6.46e-07!9;CL:0002419!6.46e-07!9;CL:0000790!6.46e-07!9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000988,1.13e-09,32;CL:0002032,1.13e-09,32;CL:0000037,1.13e-09,32;CL:0000837,1.13e-09,32;CL:0000738,1.21e-09,17;CL:0002087,1.21e-09,17;CL:0000838,3.34e-08,12;CL:0000084,3.79e-08,11;CL:0000827,3.79e-08,11;CL:0002031,4.73e-08,25;CL:0000542,1.59e-07,13;CL:0000051,1.59e-07,13;CL:0000791,4.09e-07,9;CL:0000789,4.09e-07,9;CL:0002420,4.09e-07,9;CL:0002419,4.09e-07,9;CL:0000790,4.09e-07,9 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!2.96e-18!48;UBERON:0002405!1.79e-17!70;UBERON:0002390!8.40e-17!45;UBERON:0003061!8.40e-17!45;UBERON:0004177!7.05e-11!29;UBERON:0005057!3.44e-10!51;UBERON:0003408!1.32e-08!24;UBERON:0002370!1.95e-08!23;UBERON:0000974!1.95e-08!23;UBERON:0004807!1.95e-08!23;UBERON:0005058!1.95e-08!23;UBERON:0003351!1.95e-08!23;UBERON:0009113!1.95e-08!23;UBERON:0003295!1.95e-08!23;UBERON:0009722!1.95e-08!23;UBERON:0005562!1.95e-08!23;UBERON:0007690!1.95e-08!23;UBERON:0001007!5.07e-08!128;UBERON:0001555!5.07e-08!128;UBERON:0007026!5.07e-08!128;UBERON:0004119!5.77e-08!130;UBERON:0000925!5.77e-08!130;UBERON:0006595!5.77e-08!130;UBERON:0006562!5.83e-08!24;UBERON:0001557!5.83e-08!24;UBERON:0001042!5.83e-08!24;UBERON:0008814!5.83e-08!24;UBERON:0009145!5.83e-08!24;UBERON:0004921!2.05e-07!126;UBERON:0004185!2.05e-07!126;UBERON:0005911!2.90e-07!69;UBERON:0003081!4.65e-07!88;UBERON:0002371!8.33e-07!16 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,1.71e-19,48;UBERON:0002405,1.71e-19,48;UBERON:0002390,5.63e-18,45;UBERON:0003061,5.63e-18,45;UBERON:0004177,8.27e-12,29;UBERON:0005057,8.27e-12,29;UBERON:0001007,1.13e-09,116;UBERON:0001555,1.13e-09,116;UBERON:0007026,1.13e-09,116;UBERON:0004119,1.38e-09,118;UBERON:0000925,1.38e-09,118;UBERON:0006595,1.38e-09,118;UBERON:0000077,1.65e-09,35;UBERON:0003408,1.99e-09,24;UBERON:0002370,2.95e-09,23;UBERON:0000974,2.95e-09,23;UBERON:0004807,2.95e-09,23;UBERON:0005058,2.95e-09,23;UBERON:0003351,2.95e-09,23;UBERON:0009113,2.95e-09,23;UBERON:0003295,2.95e-09,23;UBERON:0009722,2.95e-09,23;UBERON:0005562,2.95e-09,23;UBERON:0007690,2.95e-09,23;UBERON:0004921,5.56e-09,114;UBERON:0006562,9.82e-09,24;UBERON:0001557,9.82e-09,24;UBERON:0001042,9.82e-09,24;UBERON:0008814,9.82e-09,24;UBERON:0009145,9.82e-09,24;UBERON:0001041,3.85e-08,80;UBERON:0005911,1.07e-07,69;UBERON:0003929,3.40e-07,55;UBERON:0002371,5.32e-07,16 | |||
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| |||
|short_description=p1@Ccdc88b | |||
}} |
Revision as of 12:41, 4 August 2015
Short description: | p1@Ccdc88b |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Ccdc88b_5end |
Coexpression cluster: | MCL_coexpression_mm9:36 |
Association with transcript: | 0bp_to_ENSMUST00000080351, ENSMUST00000113440, NM_001081291, uc008gjb.1_5end |
EntrezGene: | 78317 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic cell | 1.13e-09 | 32 |
hematopoietic oligopotent progenitor cell | 1.13e-09 | 32 |
hematopoietic stem cell | 1.13e-09 | 32 |
hematopoietic multipotent progenitor cell | 1.13e-09 | 32 |
leukocyte | 1.21e-09 | 17 |
nongranular leukocyte | 1.21e-09 | 17 |
lymphoid lineage restricted progenitor cell | 3.34e-08 | 12 |
T cell | 3.79e-08 | 11 |
pro-T cell | 3.79e-08 | 11 |
hematopoietic lineage restricted progenitor cell | 4.73e-08 | 25 |
lymphocyte | 1.59e-07 | 13 |
common lymphoid progenitor | 1.59e-07 | 13 |
mature alpha-beta T cell | 4.09e-07 | 9 |
alpha-beta T cell | 4.09e-07 | 9 |
immature T cell | 4.09e-07 | 9 |
mature T cell | 4.09e-07 | 9 |
immature alpha-beta T cell | 4.09e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 1.71e-19 | 48 |
immune system | 1.71e-19 | 48 |
hematopoietic system | 5.63e-18 | 45 |
blood island | 5.63e-18 | 45 |
hemopoietic organ | 8.27e-12 | 29 |
immune organ | 8.27e-12 | 29 |
digestive system | 1.13e-09 | 116 |
digestive tract | 1.13e-09 | 116 |
primitive gut | 1.13e-09 | 116 |
endoderm-derived structure | 1.38e-09 | 118 |
endoderm | 1.38e-09 | 118 |
presumptive endoderm | 1.38e-09 | 118 |
mixed endoderm/mesoderm-derived structure | 1.65e-09 | 35 |
gland of gut | 1.99e-09 | 24 |
thymus | 2.95e-09 | 23 |
neck | 2.95e-09 | 23 |
respiratory system epithelium | 2.95e-09 | 23 |
hemolymphoid system gland | 2.95e-09 | 23 |
pharyngeal epithelium | 2.95e-09 | 23 |
thymic region | 2.95e-09 | 23 |
pharyngeal gland | 2.95e-09 | 23 |
entire pharyngeal arch endoderm | 2.95e-09 | 23 |
thymus primordium | 2.95e-09 | 23 |
early pharyngeal endoderm | 2.95e-09 | 23 |
subdivision of digestive tract | 5.56e-09 | 114 |
pharynx | 9.82e-09 | 24 |
upper respiratory tract | 9.82e-09 | 24 |
chordate pharynx | 9.82e-09 | 24 |
pharyngeal arch system | 9.82e-09 | 24 |
pharyngeal region of foregut | 9.82e-09 | 24 |
foregut | 3.85e-08 | 80 |
endo-epithelium | 1.07e-07 | 69 |
gut epithelium | 3.40e-07 | 55 |
bone marrow | 5.32e-07 | 16 |