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FFCP PHASE1:Mm9::chr11:98789099..98789124,+: Difference between revisions

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{{FFCP|EntrezGene=19401|HGNC=|UniProt=P11416|association_with_transcript=-7bp_to_ENSMUST00000107474_5end|description=CAGE_peak_3_at_Rara_5end|id=chr11:98789099..98789124,+|ontology_enrichment_celltype=CL:0000117!9.68e-09!23;CL:0000337!9.68e-09!23|ontology_enrichment_celltype_v019_2=CL:0000117,3.87e-09,23;CL:0000337,3.87e-09,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000033!4.31e-14!63;UBERON:0001049!1.20e-13!52;UBERON:0005068!1.20e-13!52;UBERON:0006241!1.20e-13!52;UBERON:0007135!1.20e-13!52;UBERON:0002346!1.21e-13!71;UBERON:0003075!1.21e-13!71;UBERON:0007284!1.21e-13!71;UBERON:0003056!2.38e-13!49;UBERON:0004121!5.31e-12!102;UBERON:0000924!5.31e-12!102;UBERON:0006601!5.31e-12!102;UBERON:0000955!8.66e-12!50;UBERON:0006238!8.66e-12!50;UBERON:0002616!2.76e-11!49;UBERON:0001017!3.50e-11!73;UBERON:0005743!3.50e-11!73;UBERON:0002020!6.72e-11!34;UBERON:0002780!1.16e-10!39;UBERON:0001890!1.16e-10!39;UBERON:0006240!1.16e-10!39;UBERON:0003080!1.50e-10!40;UBERON:0000073!2.54e-10!75;UBERON:0001016!2.54e-10!75;UBERON:0000153!4.83e-10!94;UBERON:0002791!5.10e-08!29;UBERON:0003528!5.10e-08!29;UBERON:0001893!5.10e-08!29;UBERON:0007811!1.58e-07!86|ontology_enrichment_uberon_v019_2=UBERON:0010371,6.35e-17,73;UBERON:0002346,9.60e-16,64;UBERON:0003075,9.60e-16,64;UBERON:0007284,9.60e-16,64;UBERON:0000073,5.47e-15,54;UBERON:0001049,2.11e-14,52;UBERON:0005068,2.11e-14,52;UBERON:0006241,2.11e-14,52;UBERON:0007135,2.11e-14,52;UBERON:0003056,2.18e-14,49;UBERON:0010314,1.05e-13,92;UBERON:0004121,9.67e-13,95;UBERON:0000924,9.67e-13,95;UBERON:0006601,9.67e-13,95;UBERON:0002020,8.06e-12,34;UBERON:0000955,8.11e-12,47;UBERON:0006238,8.11e-12,47;UBERON:0002780,1.53e-11,39;UBERON:0001890,1.53e-11,39;UBERON:0006240,1.53e-11,39;UBERON:0001017,2.02e-11,73;UBERON:0003080,2.04e-11,40;UBERON:0002616,2.73e-11,46;UBERON:0001016,1.99e-10,75;UBERON:0003528,9.64e-09,29;UBERON:0002791,9.64e-09,29;UBERON:0001893,9.64e-09,29|phase1_expression=5.2849119544582,0,0,0,0.500895729946347,0.503637815735669,1.63528848416868,0.645616617207881,0.140788722151667,0,0,0.0797721589953364,0.856003649656029,0.874204024189974,0,0.202475267389826,0,0.630924330716475,0.959801035240171,0.42438965179803,2.29616883407888,3.87234709683453,2.35079810225042,1.27993938234725,0.22940928106717,0.57423196411502,0,0,0.950117097281869,1.51218077855958,0.221730510655305,0,0,0,3.46621943701529,3.15845826181135,3.47087905646027,0,0,0,0,0,0,0,0,0,0.782391344348039,0.218025156380447,0,0,0.55994568650145,2.87505128729943,0.335565212115473,0.725362142011344,6.72187598284928,0,0.286533439938757,0.515672092277442,6.27181028664753,12.1667925232568,10.775133859605,0,0,0,0,0,0,0,2.69592992002042,2.16009501330705,1.05162480675691,8.2838785477103,8.83474163806454,4.40966877173835,4.40889166683887,8.27296907949019,4.40463523997555,4.72443150915195,2.91852413186863,6.06676923558892,7.593474419,5.2091337055676,7.2587579740359,5.06486349028512,3.36156145108982,8.83885756421003,12.1015928679237,10.6247684120421,0.302904773332736,0.226714680320357,1.15945795480671,0,0,0,0,0,0.842666520790511,0,0,0,4.22530259330042,0,0,0,1.29894624606728,1.26679932737549,0.505524445014783,0.34255163915718,1.03575153458869,1.03909497345377,3.81667718885499,1.52232739156071,2.53677046981664,1.3565037649736,1.99900802130698,0.879666139307728,0.247194967734374,0.144599356919912,0,1.45590164952668,0.441683036920787,0,1.86391761218122,12.0040126774734,12.9856958224342,2.29911349687732,0.479260498023681,0.599902730993408,0.635351135365324,2.54644086988199,4.57500602818627,8.41884159156192,5.04090528557602,3.58001640262463,3.94797284663164,3.0825839982874,2.74966282395854,0.373220911830279,0.252722758433675,4.20883711772948,5.85541993332167,3.67843367093557,5.04173963454978,5.27466862425003,4.42237244483631,3.97152532883034,5.05989312622536,8.53721123438752,7.54487975264948,6.42960672570586,7.2139960907219,7.01426343768239,5.83899223373756,6.96504333044333,6.79081050146213,3.98068533636986,0.702213187313235,0.257347907114715,0.568326998791185,8.28503090142008,6.3322036194896,6.66229627405755,9.2330446878232,7.47704080640135,6.17068451549513,6.74348439776183,5.633741429392,1.63471479314037,2.30383789878873,0.656669856316381,0.243206428637567,0.146199987425332,0.439100230582101,0.134206418760372,6.51898840548794,6.17427674275707,0.660837565967596,0.793351699990633,3.62590025909898,4.64473343720877,5.15469845288373,7.26060688644033,5.55945109612176,3.42406127002606,1.89811624617805,1.97638745668813,0.754005626400808,2.78539060857611,1.9496408711912,6.29173586057955,1.72910439899755,0.995706366271836,3.03468641524931,2.62771579002376,3.38123207019241,3.46207257337034,4.26695471768777,2.87556861550306,3.54124607895841,0.885660887877613,1.09899109488962,0.616985819609003,0,1.00107063429656,0.982794975566015,0.449724224769707,0.202860121388503,0.241177159752417,0.25462585178142,0.575392274901621,0.324270453550071,0,0,0,0,0,0,0,0.184753190166605,3.03186258832776,5.0519142697028,2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{{FFCP
|DHSsupport=NA
|DPIdataset=NA
|EntrezGene=entrezgene:19401
|HGNC=
|TSSclassifier=NA
|UniProt=uniprot:P11416
|association_with_transcript=-7bp_to_ENSMUST00000107474_5end
|cluster_id=chr11:98789099..98789124,+
|description=CAGE_peak_3_at_Rara_5end
|id=chr11:98789099..98789124,+
|ontology_enrichment_celltype=CL:0000117!9.68e-09!23;CL:0000337!9.68e-09!23
|ontology_enrichment_celltype_v019_2=CL:0000117,3.87e-09,23;CL:0000337,3.87e-09,23
|ontology_enrichment_disease=
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|ontology_enrichment_uberon_v019_2=UBERON:0010371,6.35e-17,73;UBERON:0002346,9.60e-16,64;UBERON:0003075,9.60e-16,64;UBERON:0007284,9.60e-16,64;UBERON:0000073,5.47e-15,54;UBERON:0001049,2.11e-14,52;UBERON:0005068,2.11e-14,52;UBERON:0006241,2.11e-14,52;UBERON:0007135,2.11e-14,52;UBERON:0003056,2.18e-14,49;UBERON:0010314,1.05e-13,92;UBERON:0004121,9.67e-13,95;UBERON:0000924,9.67e-13,95;UBERON:0006601,9.67e-13,95;UBERON:0002020,8.06e-12,34;UBERON:0000955,8.11e-12,47;UBERON:0006238,8.11e-12,47;UBERON:0002780,1.53e-11,39;UBERON:0001890,1.53e-11,39;UBERON:0006240,1.53e-11,39;UBERON:0001017,2.02e-11,73;UBERON:0003080,2.04e-11,40;UBERON:0002616,2.73e-11,46;UBERON:0001016,1.99e-10,75;UBERON:0003528,9.64e-09,29;UBERON:0002791,9.64e-09,29;UBERON:0001893,9.64e-09,29
|phase1_expression=5.2849119544582,0,0,0,0.500895729946347,0.503637815735669,1.63528848416868,0.645616617207881,0.140788722151667,0,0,0.0797721589953364,0.856003649656029,0.874204024189974,0,0.202475267389826,0,0.630924330716475,0.959801035240171,0.42438965179803,2.29616883407888,3.87234709683453,2.35079810225042,1.27993938234725,0.22940928106717,0.57423196411502,0,0,0.950117097281869,1.51218077855958,0.221730510655305,0,0,0,3.46621943701529,3.15845826181135,3.47087905646027,0,0,0,0,0,0,0,0,0,0.782391344348039,0.218025156380447,0,0,0.55994568650145,2.87505128729943,0.335565212115473,0.725362142011344,6.72187598284928,0,0.286533439938757,0.515672092277442,6.27181028664753,12.1667925232568,10.775133859605,0,0,0,0,0,0,0,2.69592992002042,2.16009501330705,1.05162480675691,8.2838785477103,8.83474163806454,4.40966877173835,4.40889166683887,8.27296907949019,4.40463523997555,4.72443150915195,2.91852413186863,6.06676923558892,7.593474419,5.2091337055676,7.2587579740359,5.06486349028512,3.36156145108982,8.83885756421003,12.1015928679237,10.6247684120421,0.302904773332736,0.226714680320357,1.15945795480671,0,0,0,0,0,0.842666520790511,0,0,0,4.22530259330042,0,0,0,1.29894624606728,1.26679932737549,0.505524445014783,0.34255163915718,1.03575153458869,1.03909497345377,3.81667718885499,1.52232739156071,2.53677046981664,1.3565037649736,1.99900802130698,0.879666139307728,0.247194967734374,0.144599356919912,0,1.45590164952668,0.441683036920787,0,1.86391761218122,12.0040126774734,12.9856958224342,2.29911349687732,0.479260498023681,0.599902730993408,0.635351135365324,2.54644086988199,4.57500602818627,8.41884159156192,5.04090528557602,3.58001640262463,3.94797284663164,3.0825839982874,2.74966282395854,0.373220911830279,0.252722758433675,4.20883711772948,5.85541993332167,3.67843367093557,5.04173963454978,5.27466862425003,4.42237244483631,3.97152532883034,5.05989312622536,8.53721123438752,7.54487975264948,6.42960672570586,7.2139960907219,7.01426343768239,5.83899223373756,6.96504333044333,6.79081050146213,3.98068533636986,0.702213187313235,0.257347907114715,0.568326998791185,8.28503090142008,6.3322036194896,6.66229627405755,9.2330446878232,7.47704080640135,6.17068451549513,6.74348439776183,5.633741429392,1.63471479314037,2.30383789878873,0.656669856316381,0.243206428637567,0.146199987425332,0.439100230582101,0.134206418760372,6.51898840548794,6.17427674275707,0.660837565967596,0.793351699990633,3.62590025909898,4.64473343720877,5.15469845288373,7.26060688644033,5.55945109612176,3.42406127002606,1.89811624617805,1.97638745668813,0.754005626400808,2.78539060857611,1.9496408711912,6.29173586057955,1.72910439899755,0.995706366271836,3.03468641524931,2.62771579002376,3.38123207019241,3.46207257337034,4.26695471768777,2.87556861550306,3.54124607895841,0.885660887877613,1.09899109488962,0.616985819609003,0,1.00107063429656,0.982794975566015,0.449724224769707,0.202860121388503,0.241177159752417,0.25462585178142,0.575392274901621,0.324270453550071,0,0,0,0,0,0,0,0.184753190166605,3.03186258832776,5.0519142697028,2.20668611507745,2.34690248288502,6.03022526790537,3.57065461329021,1.36593553500459,1.57635144106191,1.32878813789265,2.55127629851979,0.327726629431476,0.172684981865896,0.433947175744535,0,0,0,0.275936746304732,2.56880943980467,3.6335622843583,0,0,1.26203287766503,0,0.215423397732799,0.955875191810208,0.222798674082394,0.566153061577665,0.809621403349789,1.16902343164525,1.97643888973262,7.06906896127976,2.55492153374884,4.62970569534864,3.90928702448583,1.48473110675282,0,2.6705869977048,2.11626489875326,0.943025398779491,2.65771703592696,1.84461088766356,1.29214146584111,1.09060118843252,2.13898427030833,0,0,2.06271086496374,3.74483566329167,4.68158844481407,6.07985813778946,6.64444808597936,10.4630737848941,5.17269571046005,5.10101963866575,2.74018454203139,0.23467170806371,0.21183207086382,0.441056796109924,3.62749756471256,4.68246837418126,5.91066664295927,5.96861720015682,5.74493149107714,2.91480836629851,3.33765543618917,0,5.15967169908056,1.66675074632741,0,0.136694227721025,0.457556346413045,0.849892149969277,1.53946597556024,1.24379976423981,0,6.80122386199441,5.69294507955176,4.53622431451565,4.18176592028937,2.83871332870031,1.88810084938749,2.72756403893609,0.523511883968059,0.777689839750757,0,1.69107881605257,2.69129782879162,2.15096037594227,1.75006069509643,3.09983576346555,2.19642963138012,1.99507305697782,4.1665403150064,8.07416952077974,5.07326653734613,2.30424005006292,0.948033361884535,2.43270258348197,2.87590680061516,0.77952493786677,2.50637373934474,2.18549490259391,1.44234539423963,0.590758108698309,1.31256384932592,0.838274873204998,1.00826185136841,1.46186821109629,1.25075394132428,3.62318396762864,0.906921534460845,0.221985953374065,0,0,1.15913756419314,0.187682475451182,3.6630324853453,5.78794623513478,0,11.8597886949584,10.5874804396651,12.0308057822273,4.29632955859219,6.16574267793578,6.0431511791176,4.72515750162264,5.85417564191487,4.07828168085784,6.73088405277366,3.52876981786201,5.98537310101547,3.75613932659095,2.91728060481953,3.14419743941973,4.22840069435032,2.889207461421,3.91466608753899,2.88827288632634,4.04315538822076,5.0695859978048,4.33840585187975,4.12022632867483,3.64943368707755,4.307660171671,3.33405583898152,4.05595140806994,2.89363830695558,2.88460130562315,4.41596760403192,3.42869252385415,3.90446773550542,4.29185141905178,2.61623549938191,4.14081273827455,2.876896668317,3.29270351170991,4.20911538300549,4.20992752922171,3.36685362994643,4.03359061622192,3.94017929502254,3.6830793885272,2.78886314134739,4.82266527452853,8.99318080576605,3.74290573512653,4.29742108096597,1.72159498861959,1.10295709559758,1.39120701372253
|short_description=p3@Rara
}}

Revision as of 12:53, 4 August 2015

Short description:p3@Rara
Species:Mouse (Mus musculus)
DPI dataset: NA
TSS-like-by-RIKEN-classifier(Yes/No): NA
DHS support(Yes/No): NA
Description: CAGE_peak_3_at_Rara_5end
Coexpression cluster:NA
Association with transcript: -7bp_to_ENSMUST00000107474_5end
EntrezGene:19401
Link to Zenbu:ZENBU


View on UCSC genome browser

Mouse over to see Genome browser image, Click image to go to Genome browser


CAGE Expression

Sample

p3@Rara

Atoh1+ Inner ear hair cells - organ of corti, pool1.CNhs12533.12158-128G75.28
CD326+ enterocyte isolated from mice, treated with RANKL, day03, pool1.CNhs13242.11850-124I50.00
CD326+ enterocyte isolated from mice, treated with RANKL, day03, pool2.CNhs13233.11851-124I60.00
CD326+ enterocyte, pool1.CNhs13542.11848-124I30.00
CD326+ enterocyte, pool2.CNhs13197.11849-124I40.50
CD326++ enterocyte isolated from mice, treated with RANKL, day03, pool1.CNhs13236.11852-124I70.50
CD326++ enterocyte isolated from mice, treated with RANKL, day03, pool2.CNhs13210.11853-124I81.64
CD4+CD25+ regulatory T cells, pool2 (Balb_cAJcl).CNhs13221.11818-124E90.65
CD4+CD25-CD44- naive conventional T cells, PMA and ionomycin stimulation, 02hr, pool1 (C57BL_6J).CNhs13219.11816-124E70.14
CD4+CD25-CD44- naive conventional T cells, PMA and ionomycin stimulation, 02hr, pool2 (Balb_cAJcl).CNhs13226.11820-124F20.00
CD4+CD25-CD44- naive conventional T cells, antiCD3_CD28 stimulation, 06hr, pool1 (C57BL_6J).CNhs13218.11815-124E60.00
CD4+CD25-CD44- naive conventional T cells, antiCD3_CD28 stimulation, 06hr, pool2 (Balb_cAJcl).CNhs13225.11819-124F10.08
CD4+CD25-CD44- naive conventional T cells, pool1 (C57BL_6J).CNhs13217.11813-124E40.86
CD4+CD25-CD44- naive conventional T cells, pool2 (Balb_cAJcl).CNhs13220.11817-124E80.87
CD41+ megakaryocyte cancer, donor1.CNhs13079.11774-124A10.00
CD41+ megakaryocyte cancer, donor2.CNhs13213.11776-124A30.20
CD41+ megakaryocyte cancer, donor3.CNhs13506.11778-124A50.00
CD41+ megakaryocyte control, donor1.CNhs13212.11775-124A20.63
CD41+ megakaryocyte control, donor2.CNhs13214.11777-124A40.96
CD41+ megakaryocyte control, donor3.CNhs13201.11779-124A60.42
Clontech Mouse Universal Reference Total RNA, pool1.CNhs10609.10001-101A32.30
EBF KO HPCs induced to T cell, 00hr00min, biol_rep1.CNhs11058.12972-138H23.87
EBF KO HPCs induced to T cell, 00hr00min, biol_rep2.CNhs12980.12988-138I92.35
Follicle Associated Epithelium, pool2.CNhs13211.10262-104D11.28
Follicle Associated Epithelium, pool3.CNhs13200.10263-104D20.23
GP2+ M cell, pool1.CNhs13228.11845-124H90.57
GP2+ M cell, pool2.CNhs13231.11846-124I10.00
GP2+ M cell, pool3.CNhs13240.11847-124I20.00
Ileum epithelium, pool1.CNhs13199.10252-104B90.95
Ileum epithelium, pool2.CNhs13232.10253-104C11.51
Ileum epithelium, treated with RANKL, day03, pool3.CNhs13234.10260-104C80.22
J2E erythroblastic leukemia response to erythropoietin, 00hr00min, biol_rep1.CNhs12449.13063-139I30.00
J2E erythroblastic leukemia response to erythropoietin, 00hr00min, biol_rep2.CNhs12668.13129-140G60.00
J2E erythroblastic leukemia response to erythropoietin, 00hr00min, biol_rep3.CNhs12770.13195-141E90.00
Lgr5 positive intestinal stem cells, pool1.CNhs12555.12228-129F53.47
Lgr5 positive intestinal stem cells, pool2.CNhs12556.12229-129F63.16
Lgr5 positive intestinal stem cells, pool3.CNhs12557.12230-129F73.47
MC1+Gr1+ myeloid-derived suppressor cells cancer, donor1 (10,11,12 3LL).CNhs12539.12159-128G80.00
MC1+Gr1+ myeloid-derived suppressor cells cancer, donor2 (0127 3LL).CNhs12198.12161-128H10.00
MC1+Gr1+ myeloid-derived suppressor cells cancer, donor3 (0128 3LL).CNhs12542.12163-128H30.00
MC1+Gr1+ myeloid-derived suppressor cells control, donor1 (4,5,6PBS).CNhs12540.12160-128G90.00
MC1+Gr1+ myeloid-derived suppressor cells control, donor2 (0127 PBS).CNhs12541.12162-128H20.00
MC1+Gr1+ myeloid-derived suppressor cells control, donor3 (0128 PBS).CNhs12543.12164-128H40.00
Mouse Aortic Smooth Muscle cells - differentiated, biol_rep1.CNhs11055.11484-119D80.00
Mouse Aortic Smooth Muscle cells - differentiated, biol_rep2.CNhs11056.11485-119D90.00
Mouse Aortic Smooth Muscle cells, donor1.CNhs11297.11299-117B30.00
Mouse Astrocytes - cerebellar, donor1.CNhs13077.11708-123B70.78
Mouse Astrocytes - cerebellar, donor2.CNhs12076.11550-120C20.22
Mouse Astrocytes - hippocampus, donor1.CNhs12129.11709-123B80.00
Mouse Astrocytes - hippocampus, donor2.CNhs12077.11551-120C30.00
Mouse Astrocytes, donor2.CNhs12078.11552-120C40.56
Mouse Astrocytes, donor3.CNhs12107.11633-122C42.88
Mouse CD19+ B Cells, donor1.CNhs13531.11856-125A20.34
Mouse CD4+ T Cells, donor1.CNhs13509.11854-124I90.73
Mouse CD8+ T Cells, donor1.CNhs13511.11855-125A16.72
Mouse Cardiac Myocytes, donor1.CNhs12355.11711-123C10.00
Mouse Cardiac Myocytes, donor2.CNhs12356.11729-123E10.29
Mouse Cardiac Myocytes, donor3.CNhs12353.11634-122C50.52
Mouse Granule cells, donor1.CNhs12131.11713-123C36.27
Mouse Granule cells, donor2.CNhs12357.11731-123E312.17
Mouse Granule cells, donor3.CNhs12108.11636-122C710.78
Mouse Meningeal cells, donor1.CNhs12132.11716-123C60.00
Mouse Meningeal cells, donor3.CNhs12109.11639-122D10.00
Mouse Mesenchymal stem cells - bone marrow derived, donor1.CNhs12628.11717-123C70.00
Mouse Mesenchymal stem cells - bone marrow derived, donor2.CNhs12633.11735-123E70.00
Mouse Mesenchymal stem cells - bone marrow derived, donor3.CNhs12616.11640-122D20.00
Mouse Microglia, donor1.CNhs12629.11718-123C80.00
Mouse Microglia, donor2.CNhs12634.11736-123E80.00
Mouse Neurons - cortical, donor1.CNhs12025.11724-123D52.70
Mouse Neurons - cortical, donor2.CNhs11947.11742-123F52.16
Mouse Neurons - cortical, donor3.CNhs12112.11647-122D91.05
Mouse Neurons - dorsal spinal cord, donor2.CNhs12635.11738-123F18.28
Mouse Neurons - dorsal spinal cord, donor3.CNhs12618.11643-122D58.83
Mouse Neurons - hippocampal, donor1.CNhs12133.11721-123D24.41
Mouse Neurons - hippocampal, donor2.CNhs12359.11739-123F24.41
Mouse Neurons - hippocampal, donor3.CNhs12110.11644-122D68.27
Mouse Neurons - raphe, donor1.CNhs12631.11722-123D34.40
Mouse Neurons - raphe, donor2.CNhs12636.11740-123F34.72
Mouse Neurons - raphe, donor3.CNhs12619.11645-122D72.92
Mouse Neurons - striatal, donor1.CNhs12134.11723-123D46.07
Mouse Neurons - striatal, donor2.CNhs12360.11741-123F47.59
Mouse Neurons - striatal, donor3.CNhs12111.11646-122D85.21
Mouse Neurons - substantia nigra, donor4, tech_rep1.CNhs12612.11489-119E47.26
Mouse Neurons - substantia nigra, donor5.CNhs12614.11490-119E55.06
Mouse Neurons - substantia nigra, donor6.CNhs12643.11770-123I63.36
Mouse Neurons - ventral spinal cord, donor1.CNhs12632.11725-123D68.84
Mouse Neurons - ventral spinal cord, donor2.CNhs12638.11743-123F612.10
Mouse Neurons - ventral spinal cord, donor3.CNhs12113.11648-122E110.62
Mouse Schwann, donor1.CNhs12507.11728-123D90.30
Mouse Schwann, donor2.CNhs12573.11746-123F90.23
Mouse hepatic Sinusoidal Endothelial Cells, donor1.CNhs13209.11830-124G31.16
Mouse hepatic Stellate Cells (lipocyte), donor1.CNhs13196.11825-124F70.00
Mouse hepatocyte, donor1.CNhs13078.11714-123C40.00
Mouse hepatocyte, donor3.CNhs12615.11637-122C80.00
Mouse hepatocyte, donor6.CNhs13090.11822-124F40.00
Mouse hepatocyte, donor8.CNhs13091.11824-124F60.00
SABiosciences XpressRef Mouse Universal Total RNA, pool1.CNhs10611.10003-101A70.84
ST2 (Mesenchymal stem cells) cells, medium change (without induction), 00hr, biol_rep1 (000hC4).CNhs11939.12338-130I70.00
ST2 (Mesenchymal stem cells) cells, medium change (without induction), 00hr, biol_rep2 (000hC5).CNhs13275.12460-132E30.00
ST2 (Mesenchymal stem cells) cells, medium change (without induction), 00hr, biol_rep3 (000hC6).CNhs13324.12582-133I80.00
Sox2+ Supporting cells - organ of corti, pool1.CNhs12532.12157-128G64.23
TSt-4/DLL1 feeder cells, biol_rep1.CNhs13407.12971-138H10.00
TSt-4/DLL1 feeder cells, biol_rep2.CNhs13408.12987-138I80.00
TSt-4/DLL1 feeder cells, biol_rep3.CNhs13409.13003-139B60.00
Tracheal epithelial cells, differentiation to ciliated epithelial cells, 000hr, biol_rep1.CNhs13739.13367-143G11.30
Tracheal epithelial cells, differentiation to ciliated epithelial cells, 000hr, biol_rep2.CNhs13740.13368-143G21.27
Tracheal epithelial cells, differentiation to ciliated epithelial cells, 000hr, biol_rep3.CNhs13741.13369-143G30.51
Universal RNA - Mouse Normal Tissues Biochain, pool1.CNhs10613.10008-101B60.34
accessory axillary lymph node, adult.CNhs10475.1063-29H91.04
adrenal gland, adult.CNhs10508.49-24D71.04
adrenal gland, embryo E14.CNhs11038.406-44C53.82
adrenal gland, embryo E16.CNhs11004.1254-43D61.52
adrenal gland, embryo E17.CNhs11043.1263-45I12.54
adrenal gland, embryo E18.CNhs11026.1262-18F51.36
adrenal gland, neonate N00.CNhs11191.1311-23C12.00
adrenal gland, neonate N25.CNhs11223.1377-27I30.88
amnion, adult pregnant day17.5.CNhs10488.583-22A80.25
aorta, adult.CNhs10498.46-23H10.14
bone (os femoris), adult.CNhs10483.56-12G20.00
bone (os femoris), neonate N02.CNhs11227.1985-43F51.46
bone (os femoris), neonate N16.CNhs11225.1525-43A60.44
bone (os femoris), neonate N20.CNhs11195.1350-25C30.00
cecum, adult.CNhs10467.37-13H41.86
cerebellum, adult.CNhs10494.15-8B212.00
cerebellum, neonate N30.CNhs11135.1395-42I212.99
colon, adult.CNhs10468.36-18H72.30
common myeloid progenitor CMP, biol_rep1.CNhs12550.12122-128C70.48
common myeloid progenitor CMP, biol_rep2.CNhs12203.12125-128D10.60
common myeloid progenitor CMP, biol_rep3.CNhs12551.12128-128D40.64
corpora quadrigemina, adult.CNhs10501.16-22A42.55
corpus striatum, adult.CNhs10487.19-21D84.58
corpus striatum, neonate N00.CNhs11226.630-43F18.42
cortex, adult.CNhs10473.12-14D55.04
cortex, neonate N30.CNhs11107.1392-42F23.58
diencephalon, adult.CNhs10482.20-12F23.95
diencephalon, neonate N30.CNhs11201.1388-42B23.08
epididymis and seminiferous tubule, neonate N00.CNhs11218.1310-23B12.75
epididymis and seminiferous tubule, neonate N30.CNhs11199.1387-42A20.37
epididymis, adult.CNhs10490.58-23B20.25
eyeball, adult.CNhs10484.31-12G44.21
eyeball, embryo E12.CNhs11016.345-16C65.86
eyeball, embryo E14.CNhs10521.399-16E23.68
eyeball, embryo E15.CNhs10593.426-16C95.04
eyeball, embryo E17.CNhs11023.1261-18D45.27
eyeball, neonate N00.CNhs11207.633-15C64.42
eyeball, neonate N01.CNhs11140.1532-43E73.97
eyeball, neonate N02.CNhs11205.1551-44G85.06
eyeball, neonate N16.CNhs11188.777-19A28.54
forelimb, embryo E11.CNhs10596.335-25E27.54
forelimb, embryo E12.CNhs10600.359-14H26.43
forelimb, embryo E13.CNhs10589.384-1E27.21
forelimb, embryo E14.CNhs10577.413-26A87.01
forelimb, embryo E15.CNhs11007.437-20E75.84
forelimb, embryo E17.CNhs10598.1517-43C46.97
forelimb, embryo E18.CNhs11008.1520-43B56.79
gonad, embryo E13.CNhs11044.1564-45I63.98
granulocyte macrophage progenitor GMP, biol_rep1.CNhs12206.12123-128C80.70
granulocyte macrophage progenitor GMP, biol_rep2.CNhs12202.12126-128D20.26
granulocyte macrophage progenitor GMP, biol_rep3.CNhs11928.12129-128D50.57
heart, embryo E11.CNhs10586.331-24E98.29
heart, embryo E12.CNhs11015.353-12F56.33
heart, embryo E13.CNhs11013.376-3I96.66
heart, embryo E14.CNhs10597.403-26D49.23
heart, embryo E15.CNhs11017.431-16C87.48
heart, embryo E16.CNhs11021.457-17C66.17
heart, embryo E17.CNhs11025.479-18E56.74
heart, embryo E18.CNhs11030.1283-20G35.63
heart, neonate N00.CNhs11213.639-21E31.63
heart, neonate N03.CNhs11221.1349-25I22.30
heart, neonate N10.CNhs11118.749-24G10.66
heart, neonate N16.CNhs11209.782-15G10.24
heart, neonate N20.CNhs11127.821-26I60.15
heart, neonate N25.CNhs11196.1351-25D30.44
heart, neonate N30.CNhs11202.1390-42D20.13
hippocampus, adult.CNhs10478.13-16E86.52
hippocampus, neonate N00.CNhs11228.627-43G16.17
intestinal mucosa, adult.CNhs10506.860-29I30.66
intestine, adult.CNhs10496.178-9A30.79
intestine, embryo E12.CNhs11019.1251-16I53.63
intestine, embryo E13.CNhs11010.381-16D54.64
intestine, embryo E15.CNhs10602.976-16D85.15
intestine, embryo E16.CNhs10585.463-22H47.26
intestine, embryo E17.CNhs10582.482-18D35.56
intestine, embryo E18.CNhs10526.1289-20F73.42
intestine, neonate N00.CNhs11126.644-26D11.90
intestine, neonate N01.CNhs11192.1322-23E91.98
intestine, neonate N06.CNhs11102.688-20B80.75
intestine, neonate N07.CNhs11095.720-20F22.79
intestine, neonate N10.CNhs11098.755-23A51.95
intestine, neonate N20.CNhs11187.827-18D16.29
intestine, neonate N25.CNhs11121.1352-25E31.73
intestine, neonate N30.CNhs11131.1384-42G11.00
kidney, embryo E14.CNhs10606.411-4I93.03
kidney, embryo E15.CNhs10997.434-16F82.63
kidney, embryo E16.CNhs10584.464-22A53.38
kidney, embryo E17.CNhs11028.483-18I23.46
kidney, embryo E18.CNhs11001.1288-20C74.27
kidney, neonate N00.CNhs11214.646-21G72.88
kidney, neonate N10.CNhs11206.758-6D53.54
kidney, neonate N20.CNhs11113.832-19I10.89
kidney, neonate N25.CNhs11122.1353-25F31.10
kidney, neonate N30.CNhs11203.1385-42H10.62
liver, adult pregnant day01.CNhs10466.508-5B20.00
liver, embryo E12.CNhs10601.355-15F81.00
liver, embryo E13.CNhs10524.378-3H60.98
liver, embryo E14.CNhs10594.409-16E10.45
liver, embryo E15.CNhs10520.433-16D70.20
liver, embryo E16.CNhs10523.462-17F50.24
liver, embryo E17.CNhs10510.481-18A30.25
liver, embryo E18.CNhs10579.499-43G40.58
liver, neonate N00.CNhs11117.641-24F40.32
liver, neonate N03.CNhs11123.1345-25G20.00
liver, neonate N06.CNhs11101.684-20A80.00
liver, neonate N07.CNhs11103.716-20H20.00
liver, neonate N10.CNhs11115.751-24B90.00
liver, neonate N20.CNhs11220.823-25A30.00
liver, neonate N25.CNhs11198.1368-26H10.00
liver, neonate N30.CNhs11106.1382-42D10.00
lung, adult.CNhs10474.28-22B10.18
lung, embryo E12.CNhs10522.354-16G23.03
lung, embryo E14.CNhs10604.404-26F85.05
lung, embryo E15.CNhs11020.432-17C52.21
lung, embryo E16.CNhs10998.458-17B62.35
lung, embryo E17.CNhs10605.480-44A66.03
lung, embryo E18.CNhs10583.1287-20I63.57
lung, neonate N00.CNhs11224.640-42C61.37
lung, neonate N06.CNhs11212.683-20E51.58
lung, neonate N07.CNhs11111.715-19A31.33
lung, neonate N10.CNhs11219.750-23E62.55
lung, neonate N20.CNhs11109.822-18A40.33
lung, neonate N25.CNhs11119.1359-25C70.17
lung, neonate N30.CNhs11133.1394-42H20.43
macrophage, bone marrow derived, pool1.CNhs11457.3560-170A10.00
macrophage, bone marrow derived, pool2.CNhs11532.3632-171A10.00
mammary gland, adult lactating day02.CNhs10480.595-22B60.00
mammary gland, adult pregnant day19.CNhs10476.588-5H20.28
medulla oblongata, adult.CNhs10477.17-12C22.57
medulla oblongata, neonate N30.CNhs11200.1396-42A33.63
mouse fibroblast cell line: CRL-1658 NIH/3T3.CNhs11093.1830-49C70.00
muscle (biceps femoris), neonate N30.CNhs11129.1389-42C20.00
neurospheres - enteric neuron derived, biol_rep1.CNhs13087.11810-124E11.26
neurospheres - enteric neuron derived, biol_rep2.CNhs13088.11811-124E20.00
neurospheres - enteric neuron derived, biol_rep3.CNhs13089.11812-124E30.22
neurospheres - parasympathetic neuron derived, biol_rep1.CNhs13084.11807-124D70.96
neurospheres - parasympathetic neuron derived, biol_rep2.CNhs13085.11808-124D80.22
neurospheres - parasympathetic neuron derived, biol_rep3.CNhs13086.11809-124D90.57
neurospheres - sympathetic neuron derived, biol_rep1.CNhs13081.11804-124D40.81
neurospheres - sympathetic neuron derived, biol_rep2.CNhs13082.11805-124D51.17
neurospheres - sympathetic neuron derived, biol_rep3.CNhs13083.11806-124D61.98
olfactory brain, adult.CNhs10489.18-22I97.07
ovary, adult.CNhs10507.91-2I72.55
ovary, embryo E18.CNhs11040.505-44H74.63
ovary, neonate N00.CNhs11217.1299-22I43.91
oviduct, adult pregnant day01.CNhs10500.988-6G61.48
pancreas, adult.CNhs10486.34-16E40.00
pancreas, embryo E14.CNhs11012.405-44F42.67
pancreas, embryo E15.CNhs11042.1556-45F22.12
pancreas, embryo E16.CNhs11003.460-26E50.94
pancreas, embryo E17.CNhs10599.1558-45G32.66
pancreas, embryo E18.CNhs10580.1535-43I71.84
pancreas, neonate N00.CNhs11105.645-26G91.29
pancreas, neonate N01.CNhs11138.1531-43D71.09
pancreas, neonate N02.CNhs11139.1539-43D82.14
pancreas, neonate N16.CNhs11136.787-43B60.00
pancreas, neonate N25.CNhs11094.1555-45E20.00
pancreas, neonate N30.CNhs11182.1548-44H52.06
pituitary gland, adult.CNhs10493.21-1G83.74
pituitary gland, embryo E12.CNhs11018.346-16E64.68
pituitary gland, embryo E13.CNhs11009.370-44C76.08
pituitary gland, embryo E14.CNhs11037.398-44A56.64
pituitary gland, embryo E15.CNhs10592.427-16B910.46
pituitary gland, embryo E16.CNhs11036.449-43F65.17
pituitary gland, embryo E17.CNhs11039.1265-44F55.10
pituitary gland, neonate N00.CNhs11190.1308-22E92.74
placenta, adult pregnant day10.CNhs10472.539-13I70.23
placenta, adult pregnant day17.CNhs10464.577-18G30.21
prostate, adult.CNhs10470.859-1F80.44
skin, adult.CNhs10492.30-1C33.63
skin, neonate N00.CNhs11124.650-25G44.68
skin, neonate N03.CNhs11215.662-22H35.91
skin, neonate N06.CNhs11097.693-20I55.97
skin, neonate N10.CNhs11108.762-6C45.74
small intestine, neonate N16.CNhs11114.790-21I12.91
spinal cord, adult.CNhs10505.24-13C93.34
spleen, adult.CNhs10465.25-2G20.00
spleen, embryo E16.CNhs11035.461-43C15.16
spleen, embryo E18.CNhs11011.1271-21F21.67
spleen, neonate N10.CNhs11116.752-24D10.00
spleen, neonate N20.CNhs11112.824-19H10.14
spleen, neonate N25.CNhs11099.1354-25G30.46
stem cell (cKit+ Sca1- lineage-) KSL, biol_rep1.CNhs12534.12121-128C60.85
stem cell (cKit+ Sca1- lineage-) KSL, biol_rep2.CNhs12535.12124-128C91.54
stem cell (cKit+ Sca1- lineage-) KSL, biol_rep3.CNhs12536.12127-128D31.24
stomach, adult.CNhs10503.33-1H60.00
stomach, embryo E12.CNhs10588.356-43E36.80
stomach, embryo E15.CNhs10603.1252-16G85.69
stomach, embryo E16.CNhs11022.459-17D44.54
stomach, embryo E17.CNhs11006.1035-18D54.18
stomach, embryo E18.CNhs10999.1286-20C62.84
stomach, neonate N03.CNhs11193.1340-24B81.89
stomach, neonate N07.CNhs11210.718-18A92.73
stomach, neonate N25.CNhs11104.1355-25E40.52
stomach, neonate N30.CNhs11134.1386-42I10.78
submandibular gland, adult.CNhs10469.59-29C10.00
testis, adult.CNhs10504.57-7G51.69
testis, embryo E13.CNhs11031.389-23F52.69
testis, embryo E15.CNhs11034.443-27C52.15
testis, embryo E16.CNhs11033.470-26G51.75
testis, embryo E17.CNhs11029.486-18I53.10
testis, embryo E18.CNhs11027.503-18G52.20
testis, neonate N00.CNhs11189.1300-22B72.00
testis, neonate N07.CNhs11222.726-26I44.17
testis, neonate N10.CNhs11204.763-44D98.07
testis, neonate N20.CNhs11110.839-18H35.07
testis, neonate N30.CNhs11130.1391-42E22.30
thymus, adult.CNhs10471.38-12B50.95
thymus, embryo E14.CNhs11041.402-44I42.43
thymus, embryo E15.CNhs11005.430-45I22.88
thymus, embryo E16.CNhs11002.456-26C50.78
thymus, embryo E17.CNhs10581.478-18C12.51
thymus, embryo E18.CNhs10595.1273-19G42.19
thymus, neonate N02.CNhs11181.1541-43F81.44
thymus, neonate N03.CNhs11137.2104-43C70.59
thymus, neonate N06.CNhs11197.681-26C41.31
thymus, neonate N07.CNhs11211.713-19D30.84
thymus, neonate N10.CNhs11194.748-24E41.01
thymus, neonate N20.CNhs11186.820-7A21.46
thymus, neonate N25.CNhs11125.1362-25G71.25
thymus, neonate N30.CNhs11132.1393-42G23.62
tongue, adult.CNhs10499.32-1B40.91
trophoblast stem cell line B1 differentiation, day00, biol_rep1.CNhs13526.13297-142H30.22
trophoblast stem cell line R1AB differentiation, day00, biol_rep1.CNhs13481.13283-142F70.00
trophoblast stem cell line Rybp differentiation, day00, biol_rep1.CNhs13519.13290-142G50.00
urinary bladder, adult.CNhs10481.879-12E41.16
uterus, adult pregnant day19.CNhs10497.590-15F50.19
uterus, adult.CNhs10509.92-27E53.66
vagina, adult.CNhs10502.89-27D55.79
vesicular gland, adult.CNhs10491.51-27F80.00
visual cortex - wildtype, neonate N15, donor1.CNhs13031.10235-104A111.86
visual cortex - wildtype, neonate N15, donor2.CNhs13032.10236-104A210.59
visual cortex - wildtype, neonate N15, donor3.CNhs13033.10237-104A312.03
visual cortex - wildtype, neonate N15, donor5.CNhs13820.10349-105D74.30
visual cortex - wildtype, neonate N30, donor1.CNhs13034.10238-104A46.17
visual cortex - wildtype, neonate N30, donor2.CNhs13035.10239-104A56.04
visual cortex - wildtype, neonate N30, donor3.CNhs13036.10240-104A64.73
visual cortex - wildtype, neonate N60-70, donor1.CNhs13037.10241-104A75.85
visual cortex - wildtype, neonate N60-70, donor2.CNhs13038.10242-104A84.08
visual cortex - wildtype, neonate N60-70, donor3.CNhs13039.10243-104A96.73
whole body, embryo E11.CNhs11014.324-5I83.53
whole body, embryo E12.CNhs10587.857-27C95.99
whole body, embryo E13.CNhs10512.372-23H23.76
whole body, embryo E14.5.CNhs10578.420-27D22.92
whole body, embryo E14.CNhs10519.395-14B13.14
whole body, embryo E16.CNhs10514.453-14F24.23
whole body, embryo E17.5, pool1 (internal control).CNhs10479.3139-67G52.89
whole body, embryo E17.5, pool1 (internal control).CNhs10495.3139-67G53.91
whole body, embryo E17.5, pool1 (internal control).CNhs10511.3139-67G52.89
whole body, embryo E17.5, pool1 (internal control).CNhs10527.3139-67G54.04
whole body, embryo E17.5, pool1 (internal control).CNhs10591.3139-67G55.07
whole body, embryo E17.5, pool1 (internal control).CNhs10607.3139-67G54.34
whole body, embryo E17.5, pool1 (internal control).CNhs10623.3139-67G54.12
whole body, embryo E17.5, pool1 (internal control).CNhs10639.3139-67G53.65
whole body, embryo E17.5, pool1 (internal control).CNhs10655.3139-67G54.31
whole body, embryo E17.5, pool1 (internal control).CNhs10725.3139-67G53.33
whole body, embryo E17.5, pool1 (internal control).CNhs10749.3139-67G54.06
whole body, embryo E17.5, pool1 (internal control).CNhs10840.3139-67G52.89
whole body, embryo E17.5, pool1 (internal control).CNhs10856.3139-67G52.88
whole body, embryo E17.5, pool1 (internal control).CNhs10880.3139-67G54.42
whole body, embryo E17.5, pool1 (internal control).CNhs11000.3139-67G53.43
whole body, embryo E17.5, pool1 (internal control).CNhs11024.3139-67G53.90
whole body, embryo E17.5, pool1 (internal control).CNhs11032.3139-67G54.29
whole body, embryo E17.5, pool1 (internal control).CNhs11048.3139-67G52.62
whole body, embryo E17.5, pool1 (internal control).CNhs11072.3139-67G54.14
whole body, embryo E17.5, pool1 (internal control).CNhs11080.3139-67G52.88
whole body, embryo E17.5, pool1 (internal control).CNhs11096.3139-67G53.29
whole body, embryo E17.5, pool1 (internal control).CNhs11120.3139-67G54.21
whole body, embryo E17.5, pool1 (internal control).CNhs11128.3139-67G54.21
whole body, embryo E17.5, pool1 (internal control).CNhs11184.3139-67G53.37
whole body, embryo E17.5, pool1 (internal control).CNhs11208.3139-67G54.03
whole body, embryo E17.5, pool1 (internal control).CNhs11216.3139-67G53.94
whole body, embryo E17.5, pool1 (internal control).CNhs11246.3139-67G53.68
whole body, embryo E17.5, pool1 (internal control).CNhs11278.3139-67G52.79
whole body, embryo E17.5.CNhs10513.490-9F94.82
whole body, embryo E17.CNhs10517.475-3I58.99
whole body, embryo E18.CNhs10516.493-3B33.74
whole body, neonate N00.CNhs10525.657-19C24.30
whole body, neonate N01.CNhs10576.659-23C61.72
whole body, neonate N06.CNhs10515.692-21D11.10
whole body, neonate N10.CNhs10518.761-6B41.39





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Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data

Cell type
Ontology termp-valuen
CNS neuron (sensu Vertebrata)3.87e-0923
neuroblast (sensu Vertebrata)3.87e-0923

Uber anatomy
Ontology termp-valuen
ecto-epithelium6.35e-1773
neurectoderm9.60e-1664
neural plate9.60e-1664
presumptive neural plate9.60e-1664
regional part of nervous system5.47e-1554
neural tube2.11e-1452
neural rod2.11e-1452
future spinal cord2.11e-1452
neural keel2.11e-1452
pre-chordal neural plate2.18e-1449
structure with developmental contribution from neural crest1.05e-1392
ectoderm-derived structure9.67e-1395
ectoderm9.67e-1395
presumptive ectoderm9.67e-1395
gray matter8.06e-1234
brain8.11e-1247
future brain8.11e-1247
regional part of forebrain1.53e-1139
forebrain1.53e-1139
future forebrain1.53e-1139
central nervous system2.02e-1173
anterior neural tube2.04e-1140
regional part of brain2.73e-1146
nervous system1.99e-1075
brain grey matter9.64e-0929
regional part of telencephalon9.64e-0929
telencephalon9.64e-0929
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