FFCP PHASE1:Mm9::chr11:99092312..99092333,-: Difference between revisions
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{{FFCP|EntrezGene=57376|HGNC=|MCL_coexpression_id=2755|UniProt=O54941,C0IMW9,A2A4L8,C0IMX1|association_with_transcript=0bp_to_ENSMUST00000103133,ENSMUST00000166012,NM_020618,uc007lii.1,uc007lij.1,uc011yej.1,uc011yek.1,uc011yel.1,uc011yem.1,uc011yen.1_5end|description=CAGE_peak_4_at_Smarce1_5end|id=chr11:99092312..99092333,-|ontology_enrichment_celltype=CL:0000540!6.06e-10!33;CL:0000047!6.06e-10!33;CL:0000031!6.06e-10!33;CL:0000404!6.06e-10!33;CL:0000393!1.60e-08!39;CL:0000211!1.60e-08!39;CL:0002319!4.04e-08!43;CL:0000221!4.46e-08!44;CL:0000133!4.46e-08!44;CL:0000117!2.22e-07!23;CL:0000337!2.22e-07!23|ontology_enrichment_celltype_v019_2=CL:0000540,1.59e-11,33;CL:0000047,1.59e-11,33;CL:0000031,1.59e-11,33;CL:0000404,1.59e-11,33;CL:0000117,5.21e-10,23;CL:0000337,5.21e-10,23;CL:0000393,1.63e-08,39;CL:0000211,1.63e-08,39;CL:0002319,9.38e-08,43;CL:0000221,2.10e-07,44;CL:0000133,2.10e-07,44|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!3.31e-11!73;UBERON:0005743!3.31e-11!73;UBERON:0000073!7.52e-11!75;UBERON:0001016!7.52e-11!75;UBERON:0003056!5.77e-09!49;UBERON:0004121!1.13e-08!102;UBERON:0000924!1.13e-08!102;UBERON:0006601!1.13e-08!102;UBERON:0002346!1.15e-08!71;UBERON:0003075!1.15e-08!71;UBERON:0007284!1.15e-08!71;UBERON:0000153!3.34e-08!94;UBERON:0003080!6.39e-08!40;UBERON:0002780!7.46e-08!39;UBERON:0001890!7.46e-08!39;UBERON:0006240!7.46e-08!39;UBERON:0001049!8.46e-08!52;UBERON:0005068!8.46e-08!52;UBERON:0006241!8.46e-08!52;UBERON:0007135!8.46e-08!52;UBERON:0002020!6.20e-07!34|ontology_enrichment_uberon_v019_2=UBERON:0001017,7.79e-12,73;UBERON:0003056,1.27e-11,49;UBERON:0002346,2.02e-11,64;UBERON:0003075,2.02e-11,64;UBERON:0007284,2.02e-11,64;UBERON:0001016,3.69e-11,75;UBERON:0002780,2.67e-10,39;UBERON:0001890,2.67e-10,39;UBERON:0006240,2.67e-10,39;UBERON:0004121,6.95e-10,95;UBERON:0000924,6.95e-10,95;UBERON:0006601,6.95e-10,95;UBERON:0003080,7.93e-10,40;UBERON:0002020,2.62e-09,34;UBERON:0001049,3.78e-09,52;UBERON:0005068,3.78e-09,52;UBERON:0006241,3.78e-09,52;UBERON:0007135,3.78e-09,52;UBERON:0010371,1.50e-08,73;UBERON:0000955,1.50e-08,47;UBERON:0006238,1.50e-08,47;UBERON:0000073,1.85e-08,54;UBERON:0002616,4.61e-08,46;UBERON:0003528,8.06e-08,29;UBERON:0002791,8.06e-08,29;UBERON:0001893,8.06e-08,29|phase1_expression=0.80074423552397,0,0,0,0,0,0,0,2.81577444303333,3.04283884218592,0.513653904676515,1.83475965689274,0,0.174840804837995,0,0,0,0.315462165358238,0.137114433605739,0,0.510259740906419,1.09220046320974,0.522399578277871,0.319984845586813,0.22940928106717,0,0,0.215471232685889,0,0,0,0.635030673459631,1.23012957516914,0,0,0,0,0,0,0,0,0,0,0.377690453926732,0.608261587317087,0.734187008646726,0.782391344348039,0,0.219686182734472,0.58328969722285,0.699932108126813,1.43752564364972,0.335565212115473,0,0,0.257259436035947,0.573066879877513,0,3.64169629547276,2.11596391708813,5.70448263155561,0.677689064138264,0,0,0,0,0.299600110518405,0.384218305321555,2.07379224616955,3.78016627328734,2.3135745748652,0.571301968807607,1.54607978666129,3.55223317723367,3.92966431174769,3.67687514644008,0,0.893811366596314,0,5.01167893374737,5.12330804173494,3.12548022334056,0.279182999001381,1.12552522006336,1.06958773443767,1.17851434189467,1.99320353118744,2.79599168737951,0.075726193333184,0.604572480854284,0.289864488701678,0,0.679971333707751,0,0,0,0.140444420131752,0.340860645156116,0,0,0.563373679106722,1.28326477414318,0,0,0.649473123033642,0.506719730950197,0.505524445014783,0.22836775943812,0.258937883647172,0.148442139064825,1.90833859442749,0,0.691846491768175,0.60289056221049,0.23517741427141,0.125666591329675,0.494389935468748,0.144599356919912,0,0.808834249737046,0,0,0,0,0,0,0,0.599902730993408,0.254140454146129,0.748953197024114,2.74500361691176,3.76963056338593,1.21677024134594,1.27857728665165,1.0389402227978,0.324482526135515,1.2220723662038,0.124406970610093,0,0,4.29397461776922,3.21862946206862,2.34080768746954,0.90422890701429,1.29269348387523,1.15302348256365,1.3118241438362,0,10.7783996466421,5.29497024469894,4.57472922826267,2.41115305670332,1.11218899690239,0.348252166522167,0.411564272815887,1.59227413454795,0,0.51469581422943,0.568326998791185,3.52113813310353,2.11073453982987,0.540186184383045,1.18372367792605,0.196764231747404,0.308534225774757,0.232533944750408,0.536546802799238,0.350296027101508,0.987359099480883,0.32833492815819,0.243206428637567,0,0,0,0.841159794256509,3.19004298375782,0,0,2.13288250535234,3.25131340604614,2.70621668776396,0.605050573870028,0.444756087689741,0.190225626112559,0,0.164698954724011,0,0.397912944082302,0.19496408711912,0,0,0.199141273254367,3.41402221715547,1.82797620175566,0,2.24016460629846,0.387904974335251,0.771494018793504,0.189709611372772,0,0,0,0,0.333690211432188,0.393117990226406,0.449724224769707,0.811440485554012,0.482354319504834,0.25462585178142,0.287696137450811,0.162135226775035,0,0,0,0.312037673114561,0,0,0.482443521363367,0,3.41084541186873,1.46668478797823,1.69745085775188,0.469380496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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:57376 | |||
|HGNC= | |||
|MCL_coexpression_id=2755 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:O54941,uniprot:C0IMW9,uniprot:A2A4L8,uniprot:C0IMX1 | |||
|association_with_transcript=0bp_to_ENSMUST00000103133,ENSMUST00000166012,NM_020618,uc007lii.1,uc007lij.1,uc011yej.1,uc011yek.1,uc011yel.1,uc011yem.1,uc011yen.1_5end | |||
|cluster_id=chr11:99092312..99092333,- | |||
|description=CAGE_peak_4_at_Smarce1_5end | |||
|id=chr11:99092312..99092333,- | |||
|ontology_enrichment_celltype=CL:0000540!6.06e-10!33;CL:0000047!6.06e-10!33;CL:0000031!6.06e-10!33;CL:0000404!6.06e-10!33;CL:0000393!1.60e-08!39;CL:0000211!1.60e-08!39;CL:0002319!4.04e-08!43;CL:0000221!4.46e-08!44;CL:0000133!4.46e-08!44;CL:0000117!2.22e-07!23;CL:0000337!2.22e-07!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,1.59e-11,33;CL:0000047,1.59e-11,33;CL:0000031,1.59e-11,33;CL:0000404,1.59e-11,33;CL:0000117,5.21e-10,23;CL:0000337,5.21e-10,23;CL:0000393,1.63e-08,39;CL:0000211,1.63e-08,39;CL:0002319,9.38e-08,43;CL:0000221,2.10e-07,44;CL:0000133,2.10e-07,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!3.31e-11!73;UBERON:0005743!3.31e-11!73;UBERON:0000073!7.52e-11!75;UBERON:0001016!7.52e-11!75;UBERON:0003056!5.77e-09!49;UBERON:0004121!1.13e-08!102;UBERON:0000924!1.13e-08!102;UBERON:0006601!1.13e-08!102;UBERON:0002346!1.15e-08!71;UBERON:0003075!1.15e-08!71;UBERON:0007284!1.15e-08!71;UBERON:0000153!3.34e-08!94;UBERON:0003080!6.39e-08!40;UBERON:0002780!7.46e-08!39;UBERON:0001890!7.46e-08!39;UBERON:0006240!7.46e-08!39;UBERON:0001049!8.46e-08!52;UBERON:0005068!8.46e-08!52;UBERON:0006241!8.46e-08!52;UBERON:0007135!8.46e-08!52;UBERON:0002020!6.20e-07!34 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,7.79e-12,73;UBERON:0003056,1.27e-11,49;UBERON:0002346,2.02e-11,64;UBERON:0003075,2.02e-11,64;UBERON:0007284,2.02e-11,64;UBERON:0001016,3.69e-11,75;UBERON:0002780,2.67e-10,39;UBERON:0001890,2.67e-10,39;UBERON:0006240,2.67e-10,39;UBERON:0004121,6.95e-10,95;UBERON:0000924,6.95e-10,95;UBERON:0006601,6.95e-10,95;UBERON:0003080,7.93e-10,40;UBERON:0002020,2.62e-09,34;UBERON:0001049,3.78e-09,52;UBERON:0005068,3.78e-09,52;UBERON:0006241,3.78e-09,52;UBERON:0007135,3.78e-09,52;UBERON:0010371,1.50e-08,73;UBERON:0000955,1.50e-08,47;UBERON:0006238,1.50e-08,47;UBERON:0000073,1.85e-08,54;UBERON:0002616,4.61e-08,46;UBERON:0003528,8.06e-08,29;UBERON:0002791,8.06e-08,29;UBERON:0001893,8.06e-08,29 | |||
|phase1_expression=0.80074423552397,0,0,0,0,0,0,0,2.81577444303333,3.04283884218592,0.513653904676515,1.83475965689274,0,0.174840804837995,0,0,0,0.315462165358238,0.137114433605739,0,0.510259740906419,1.09220046320974,0.522399578277871,0.319984845586813,0.22940928106717,0,0,0.215471232685889,0,0,0,0.635030673459631,1.23012957516914,0,0,0,0,0,0,0,0,0,0,0.377690453926732,0.608261587317087,0.734187008646726,0.782391344348039,0,0.219686182734472,0.58328969722285,0.699932108126813,1.43752564364972,0.335565212115473,0,0,0.257259436035947,0.573066879877513,0,3.64169629547276,2.11596391708813,5.70448263155561,0.677689064138264,0,0,0,0,0.299600110518405,0.384218305321555,2.07379224616955,3.78016627328734,2.3135745748652,0.571301968807607,1.54607978666129,3.55223317723367,3.92966431174769,3.67687514644008,0,0.893811366596314,0,5.01167893374737,5.12330804173494,3.12548022334056,0.279182999001381,1.12552522006336,1.06958773443767,1.17851434189467,1.99320353118744,2.79599168737951,0.075726193333184,0.604572480854284,0.289864488701678,0,0.679971333707751,0,0,0,0.140444420131752,0.340860645156116,0,0,0.563373679106722,1.28326477414318,0,0,0.649473123033642,0.506719730950197,0.505524445014783,0.22836775943812,0.258937883647172,0.148442139064825,1.90833859442749,0,0.691846491768175,0.60289056221049,0.23517741427141,0.125666591329675,0.494389935468748,0.144599356919912,0,0.808834249737046,0,0,0,0,0,0,0,0.599902730993408,0.254140454146129,0.748953197024114,2.74500361691176,3.76963056338593,1.21677024134594,1.27857728665165,1.0389402227978,0.324482526135515,1.2220723662038,0.124406970610093,0,0,4.29397461776922,3.21862946206862,2.34080768746954,0.90422890701429,1.29269348387523,1.15302348256365,1.3118241438362,0,10.7783996466421,5.29497024469894,4.57472922826267,2.41115305670332,1.11218899690239,0.348252166522167,0.411564272815887,1.59227413454795,0,0.51469581422943,0.568326998791185,3.52113813310353,2.11073453982987,0.540186184383045,1.18372367792605,0.196764231747404,0.308534225774757,0.232533944750408,0.536546802799238,0.350296027101508,0.987359099480883,0.32833492815819,0.243206428637567,0,0,0,0.841159794256509,3.19004298375782,0,0,2.13288250535234,3.25131340604614,2.70621668776396,0.605050573870028,0.444756087689741,0.190225626112559,0,0.164698954724011,0,0.397912944082302,0.19496408711912,0,0,0.199141273254367,3.41402221715547,1.82797620175566,0,2.24016460629846,0.387904974335251,0.771494018793504,0.189709611372772,0,0,0,0,0.333690211432188,0.393117990226406,0.449724224769707,0.811440485554012,0.482354319504834,0.25462585178142,0.287696137450811,0.162135226775035,0,0,0,0.312037673114561,0,0,0.482443521363367,0,3.41084541186873,1.46668478797823,1.69745085775188,0.469380496577004,0.167506257441816,0,0,0.315270288212382,0,0.159454768657487,0.327726629431476,0,0,0,0,0,0,0.80275294993896,1.05490517932983,1.47541450839008,0,0.94652465824877,1.17131623288992,1.72338718186239,1.43381278771531,1.55959071857676,1.98153571552183,0.809621403349789,1.16902343164525,2.76701444562566,1.92792789853084,0.141940085208269,0.35613120733451,1.62886959353576,0.494910368917606,0,2.18502572539483,0.604647113929502,0.188605079755898,0.295301892880773,0,0.516856586336442,0.363533729477506,0,0.316036757935816,0,0,1.02131881726136,3.42116078659489,1.94038025674132,1.50035924522115,1.77340233642274,1.24858172321449,1.31639216481697,0.913394847343798,0.469343416127421,1.0591603543191,0,0,0.322928853391811,0.542816324353403,0.954978752025092,0.164140899745061,0,0.556275906031529,0,0.619160603889667,0.555583582109135,0.188368457004691,0.410082683163076,0.228778173206523,0.339956859987711,0.69975726161829,0.276399947608848,0.954670618015114,3.95419991976419,0.813277868507395,1.08005340821801,0.209088296014469,0.218362563746178,0.404593039154462,0.247960367176008,0,0.129614973291793,0,0.56369293868419,2.99033092087958,2.15096037594227,2.91676782516071,1.93739735216597,1.35164900392623,0.821500670520278,1.43224823328345,0.419437377702843,0.241584120826006,0.576060012515731,0.632022241256357,1.21635129174099,0.924398614483445,0.77952493786677,1.25318686967237,0.596044064343795,0.480781798079875,1.18151621739662,0.706765149637033,0.914481679859998,0.403304740547362,0.0974578807397524,0.384847366561318,0.233753804363138,0,3.99574716073316,1.43542170575161,2.01461539636894,0,0.375364950902364,0.183151624267265,0.214368379079066,0,1.12950368523413,0,0,1.3748254587495,0,0,0.675022500231806,1.80128481289688,1.35942722695261,1.03552062350364,7.9916257639816,4.38927360741134,2.56100408631201,0.486213434136588,1.88651846365184,1.2869045591501,1.55572709461131,0.412070114477788,0.320919209591815,0.252697211763798,1.01391719956096,0.754505365544305,0.561849044819294,0.704276676453562,0.746661096422973,0.476293691283074,1.0429589335037,0.192909220463705,1.64834360321323,0.147198920134397,0.685738504770831,0.70990322463735,0.715308569841963,0.581385666529314,0.941093804153306,0.676916863133412,0.914639864363863,1.57841826862706,0.543216455383447,0,1.06771516311757,1.57607171800902,0.409231043169689,1.54936841185966,1.73615949883027,1.99848462350357,0.935726433781634,1.07435527024149,0,0.441182838239031,0 | |||
|short_description=p4@Smarce1 | |||
}} |
Revision as of 13:14, 4 August 2015
Short description: | p4@Smarce1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Smarce1_5end |
Coexpression cluster: | MCL_coexpression_mm9:2755 |
Association with transcript: | 0bp_to_ENSMUST00000103133, ENSMUST00000166012, NM_020618, uc007lii.1, uc007lij.1, uc011yej.1, uc011yek.1, uc011yel.1, uc011yem.1, uc011yen.1_5end |
EntrezGene: | 57376 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 1.59e-11 | 33 |
neuronal stem cell | 1.59e-11 | 33 |
neuroblast | 1.59e-11 | 33 |
electrically signaling cell | 1.59e-11 | 33 |
CNS neuron (sensu Vertebrata) | 5.21e-10 | 23 |
neuroblast (sensu Vertebrata) | 5.21e-10 | 23 |
electrically responsive cell | 1.63e-08 | 39 |
electrically active cell | 1.63e-08 | 39 |
neural cell | 9.38e-08 | 43 |
ectodermal cell | 2.10e-07 | 44 |
neurectodermal cell | 2.10e-07 | 44 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 7.79e-12 | 73 |
pre-chordal neural plate | 1.27e-11 | 49 |
neurectoderm | 2.02e-11 | 64 |
neural plate | 2.02e-11 | 64 |
presumptive neural plate | 2.02e-11 | 64 |
nervous system | 3.69e-11 | 75 |
regional part of forebrain | 2.67e-10 | 39 |
forebrain | 2.67e-10 | 39 |
future forebrain | 2.67e-10 | 39 |
ectoderm-derived structure | 6.95e-10 | 95 |
ectoderm | 6.95e-10 | 95 |
presumptive ectoderm | 6.95e-10 | 95 |
anterior neural tube | 7.93e-10 | 40 |
gray matter | 2.62e-09 | 34 |
neural tube | 3.78e-09 | 52 |
neural rod | 3.78e-09 | 52 |
future spinal cord | 3.78e-09 | 52 |
neural keel | 3.78e-09 | 52 |
ecto-epithelium | 1.50e-08 | 73 |
brain | 1.50e-08 | 47 |
future brain | 1.50e-08 | 47 |
regional part of nervous system | 1.85e-08 | 54 |
regional part of brain | 4.61e-08 | 46 |
brain grey matter | 8.06e-08 | 29 |
regional part of telencephalon | 8.06e-08 | 29 |
telencephalon | 8.06e-08 | 29 |