FFCP PHASE1:Mm9::chr4:120648071..120648079,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|EntrezGene=69780|HGNC=|MCL_coexpression_id=1224|UniProt=|association_with_transcript=233bp_to_ENSMUST00000151615_5end|description=CAGE_peak_8_at_Smap2_5end|id=chr4:120648071..120648079,-|ontology_enrichment_celltype=CL:0000838!2.40e-09!12;CL:0002031!7.62e-09!25;CL:0000988!8.80e-09!32;CL:0002032!8.80e-09!32;CL:0000037!8.80e-09!32;CL:0000566!8.80e-09!32;CL:0000837!8.80e-09!32;CL:0000542!1.67e-08!13;CL:0000051!1.67e-08!13;CL:0000084!6.45e-08!11;CL:0000827!6.45e-08!11;CL:0000791!9.64e-08!9;CL:0000789!9.64e-08!9;CL:0002420!9.64e-08!9;CL:0002419!9.64e-08!9;CL:0000790!9.64e-08!9|ontology_enrichment_celltype_v019_2=CL:0000791,6.55e-14,9;CL:0000789,6.55e-14,9;CL:0002420,6.55e-14,9;CL:0002419,6.55e-14,9;CL:0000790,6.55e-14,9;CL:0000084,1.96e-11,11;CL:0000827,1.96e-11,11;CL:0002031,1.47e-10,25;CL:0000838,1.67e-10,12;CL:0000542,1.03e-09,13;CL:0000051,1.03e-09,13;CL:0000624,3.60e-09,8;CL:0000625,4.39e-09,1;CL:0000988,3.44e-08,32;CL:0002032,3.44e-08,32;CL:0000037,3.44e-08,32;CL:0000837,3.44e-08,32;CL:0000738,1.77e-07,17;CL:0002087,1.77e-07,17|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004177!2.54e-21!29;UBERON:0002193!1.51e-20!48;UBERON:0002370!1.90e-20!23;UBERON:0000974!1.90e-20!23;UBERON:0004807!1.90e-20!23;UBERON:0005058!1.90e-20!23;UBERON:0003351!1.90e-20!23;UBERON:0009113!1.90e-20!23;UBERON:0003295!1.90e-20!23;UBERON:0009722!1.90e-20!23;UBERON:0005562!1.90e-20!23;UBERON:0007690!1.90e-20!23;UBERON:0006562!2.11e-19!24;UBERON:0003408!2.11e-19!24;UBERON:0001557!2.11e-19!24;UBERON:0001042!2.11e-19!24;UBERON:0008814!2.11e-19!24;UBERON:0009145!2.11e-19!24;UBERON:0002390!1.44e-18!45;UBERON:0003061!1.44e-18!45;UBERON:0000072!9.86e-17!27;UBERON:0000065!9.83e-14!41;UBERON:0001004!2.79e-13!42;UBERON:0002405!5.06e-13!70;UBERON:0000063!7.09e-12!35;UBERON:0005057!5.51e-11!51;UBERON:0003081!6.52e-10!88;UBERON:0005911!6.71e-07!69;UBERON:0003929!7.21e-07!55|ontology_enrichment_uberon_v019_2=UBERON:0002193,1.35e-11,48;UBERON:0002405,1.35e-11,48;UBERON:0002370,2.84e-11,23;UBERON:0000974,2.84e-11,23;UBERON:0004807,2.84e-11,23;UBERON:0005058,2.84e-11,23;UBERON:0003351,2.84e-11,23;UBERON:0009113,2.84e-11,23;UBERON:0003295,2.84e-11,23;UBERON:0009722,2.84e-11,23;UBERON:0005562,2.84e-11,23;UBERON:0007690,2.84e-11,23;UBERON:0006562,8.56e-11,24;UBERON:0003408,8.56e-11,24;UBERON:0001557,8.56e-11,24;UBERON:0001042,8.56e-11,24;UBERON:0008814,8.56e-11,24;UBERON:0009145,8.56e-11,24;UBERON:0002390,9.11e-10,45;UBERON:0003061,9.11e-10,45;UBERON:0000072,1.44e-09,27;UBERON:0004177,6.85e-09,29;UBERON:0005057,6.85e-09,29;UBERON:0000029,8.81e-09,1;UBERON:0001097,8.81e-09,1;UBERON:0003968,8.81e-09,1;UBERON:0001467,8.81e-09,1;UBERON:0000077,2.56e-07,35;UBERON:0007811,4.17e-07,36|phase1_expression=0,0,0,0,0,0,0,0.387369970324729,0,0.234064526321993,0,0,4.28001824828014,4.63328132820686,0,0.404950534779652,0,1.10411757875383,1.91960207048034,0.84877930359606,0.0850432901510698,0.0992909512008853,0,0.159992422793407,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.838913030288682,4.35217285206807,10.4189077734164,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.15279824777681,0,0,0,0,0,0,0,0,0,0,0,0.280888840263504,0,0,0,0,0,0,0,0,0,0,0.22836775943812,3.6251303710604,0,0,0,0,0,0,0,0,0.144599356919912,0,0,0,0.484875253135222,0,0,0,0,0.718890747035522,0,0.254140454146129,0,0,0,0,0,0,0,0,0.248813941220186,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0632365371242573,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179397413521912,0,0.554259570499814,0,0,0,0,0,0,0,0,0,0,0,0.518054945597687,0.144649058581512,0,0,0.491764273019036,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.341741761595705,0,0,0,0.136694227721025,0.228778173206523,0.509935289981566,1.25956307091292,0.829199842826543,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129159823477731,0,0,0,0,0,0,0.948033361884535,0.202725215290164,0.308132871494482,0.129920822977795,0.358053391334963,0.79472541912506,0.480781798079875,0.886137163047463,0.403865799792591,1.06689529317,1.10908803650525,0.877120926657772,2.11666051608725,2.10378423926824,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.231867835620421|short_description=p8@Smap2}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:69780 | |||
|HGNC= | |||
|MCL_coexpression_id=1224 | |||
|TSSclassifier=NA | |||
|UniProt= | |||
|association_with_transcript=233bp_to_ENSMUST00000151615_5end | |||
|cluster_id=chr4:120648071..120648079,- | |||
|description=CAGE_peak_8_at_Smap2_5end | |||
|id=chr4:120648071..120648079,- | |||
|ontology_enrichment_celltype=CL:0000838!2.40e-09!12;CL:0002031!7.62e-09!25;CL:0000988!8.80e-09!32;CL:0002032!8.80e-09!32;CL:0000037!8.80e-09!32;CL:0000566!8.80e-09!32;CL:0000837!8.80e-09!32;CL:0000542!1.67e-08!13;CL:0000051!1.67e-08!13;CL:0000084!6.45e-08!11;CL:0000827!6.45e-08!11;CL:0000791!9.64e-08!9;CL:0000789!9.64e-08!9;CL:0002420!9.64e-08!9;CL:0002419!9.64e-08!9;CL:0000790!9.64e-08!9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,6.55e-14,9;CL:0000789,6.55e-14,9;CL:0002420,6.55e-14,9;CL:0002419,6.55e-14,9;CL:0000790,6.55e-14,9;CL:0000084,1.96e-11,11;CL:0000827,1.96e-11,11;CL:0002031,1.47e-10,25;CL:0000838,1.67e-10,12;CL:0000542,1.03e-09,13;CL:0000051,1.03e-09,13;CL:0000624,3.60e-09,8;CL:0000625,4.39e-09,1;CL:0000988,3.44e-08,32;CL:0002032,3.44e-08,32;CL:0000037,3.44e-08,32;CL:0000837,3.44e-08,32;CL:0000738,1.77e-07,17;CL:0002087,1.77e-07,17 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004177!2.54e-21!29;UBERON:0002193!1.51e-20!48;UBERON:0002370!1.90e-20!23;UBERON:0000974!1.90e-20!23;UBERON:0004807!1.90e-20!23;UBERON:0005058!1.90e-20!23;UBERON:0003351!1.90e-20!23;UBERON:0009113!1.90e-20!23;UBERON:0003295!1.90e-20!23;UBERON:0009722!1.90e-20!23;UBERON:0005562!1.90e-20!23;UBERON:0007690!1.90e-20!23;UBERON:0006562!2.11e-19!24;UBERON:0003408!2.11e-19!24;UBERON:0001557!2.11e-19!24;UBERON:0001042!2.11e-19!24;UBERON:0008814!2.11e-19!24;UBERON:0009145!2.11e-19!24;UBERON:0002390!1.44e-18!45;UBERON:0003061!1.44e-18!45;UBERON:0000072!9.86e-17!27;UBERON:0000065!9.83e-14!41;UBERON:0001004!2.79e-13!42;UBERON:0002405!5.06e-13!70;UBERON:0000063!7.09e-12!35;UBERON:0005057!5.51e-11!51;UBERON:0003081!6.52e-10!88;UBERON:0005911!6.71e-07!69;UBERON:0003929!7.21e-07!55 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,1.35e-11,48;UBERON:0002405,1.35e-11,48;UBERON:0002370,2.84e-11,23;UBERON:0000974,2.84e-11,23;UBERON:0004807,2.84e-11,23;UBERON:0005058,2.84e-11,23;UBERON:0003351,2.84e-11,23;UBERON:0009113,2.84e-11,23;UBERON:0003295,2.84e-11,23;UBERON:0009722,2.84e-11,23;UBERON:0005562,2.84e-11,23;UBERON:0007690,2.84e-11,23;UBERON:0006562,8.56e-11,24;UBERON:0003408,8.56e-11,24;UBERON:0001557,8.56e-11,24;UBERON:0001042,8.56e-11,24;UBERON:0008814,8.56e-11,24;UBERON:0009145,8.56e-11,24;UBERON:0002390,9.11e-10,45;UBERON:0003061,9.11e-10,45;UBERON:0000072,1.44e-09,27;UBERON:0004177,6.85e-09,29;UBERON:0005057,6.85e-09,29;UBERON:0000029,8.81e-09,1;UBERON:0001097,8.81e-09,1;UBERON:0003968,8.81e-09,1;UBERON:0001467,8.81e-09,1;UBERON:0000077,2.56e-07,35;UBERON:0007811,4.17e-07,36 | |||
|phase1_expression=0,0,0,0,0,0,0,0.387369970324729,0,0.234064526321993,0,0,4.28001824828014,4.63328132820686,0,0.404950534779652,0,1.10411757875383,1.91960207048034,0.84877930359606,0.0850432901510698,0.0992909512008853,0,0.159992422793407,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.838913030288682,4.35217285206807,10.4189077734164,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.15279824777681,0,0,0,0,0,0,0,0,0,0,0,0.280888840263504,0,0,0,0,0,0,0,0,0,0,0.22836775943812,3.6251303710604,0,0,0,0,0,0,0,0,0.144599356919912,0,0,0,0.484875253135222,0,0,0,0,0.718890747035522,0,0.254140454146129,0,0,0,0,0,0,0,0,0.248813941220186,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0632365371242573,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179397413521912,0,0.554259570499814,0,0,0,0,0,0,0,0,0,0,0,0.518054945597687,0.144649058581512,0,0,0.491764273019036,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.341741761595705,0,0,0,0.136694227721025,0.228778173206523,0.509935289981566,1.25956307091292,0.829199842826543,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129159823477731,0,0,0,0,0,0,0.948033361884535,0.202725215290164,0.308132871494482,0.129920822977795,0.358053391334963,0.79472541912506,0.480781798079875,0.886137163047463,0.403865799792591,1.06689529317,1.10908803650525,0.877120926657772,2.11666051608725,2.10378423926824,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.231867835620421 | |||
|short_description=p8@Smap2 | |||
}} |
Revision as of 16:39, 4 August 2015
Short description: | p8@Smap2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_8_at_Smap2_5end |
Coexpression cluster: | MCL_coexpression_mm9:1224 |
Association with transcript: | 233bp_to_ENSMUST00000151615_5end |
EntrezGene: | 69780 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 6.55e-14 | 9 |
alpha-beta T cell | 6.55e-14 | 9 |
immature T cell | 6.55e-14 | 9 |
mature T cell | 6.55e-14 | 9 |
immature alpha-beta T cell | 6.55e-14 | 9 |
T cell | 1.96e-11 | 11 |
pro-T cell | 1.96e-11 | 11 |
hematopoietic lineage restricted progenitor cell | 1.47e-10 | 25 |
lymphoid lineage restricted progenitor cell | 1.67e-10 | 12 |
lymphocyte | 1.03e-09 | 13 |
common lymphoid progenitor | 1.03e-09 | 13 |
CD4-positive, alpha-beta T cell | 3.60e-09 | 8 |
CD8-positive, alpha-beta T cell | 4.39e-09 | 1 |
hematopoietic cell | 3.44e-08 | 32 |
hematopoietic oligopotent progenitor cell | 3.44e-08 | 32 |
hematopoietic stem cell | 3.44e-08 | 32 |
hematopoietic multipotent progenitor cell | 3.44e-08 | 32 |
leukocyte | 1.77e-07 | 17 |
nongranular leukocyte | 1.77e-07 | 17 |
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 1.35e-11 | 48 |
immune system | 1.35e-11 | 48 |
thymus | 2.84e-11 | 23 |
neck | 2.84e-11 | 23 |
respiratory system epithelium | 2.84e-11 | 23 |
hemolymphoid system gland | 2.84e-11 | 23 |
pharyngeal epithelium | 2.84e-11 | 23 |
thymic region | 2.84e-11 | 23 |
pharyngeal gland | 2.84e-11 | 23 |
entire pharyngeal arch endoderm | 2.84e-11 | 23 |
thymus primordium | 2.84e-11 | 23 |
early pharyngeal endoderm | 2.84e-11 | 23 |
pharynx | 8.56e-11 | 24 |
gland of gut | 8.56e-11 | 24 |
upper respiratory tract | 8.56e-11 | 24 |
chordate pharynx | 8.56e-11 | 24 |
pharyngeal arch system | 8.56e-11 | 24 |
pharyngeal region of foregut | 8.56e-11 | 24 |
hematopoietic system | 9.11e-10 | 45 |
blood island | 9.11e-10 | 45 |
segment of respiratory tract | 1.44e-09 | 27 |
hemopoietic organ | 6.85e-09 | 29 |
immune organ | 6.85e-09 | 29 |
lymph node | 8.81e-09 | 1 |
axillary lymph node | 8.81e-09 | 1 |
peripheral lymph node | 8.81e-09 | 1 |
shoulder | 8.81e-09 | 1 |
mixed endoderm/mesoderm-derived structure | 2.56e-07 | 35 |
craniocervical region | 4.17e-07 | 36 |