FFCP PHASE1:Mm9::chr12:40764506..40764600,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|EntrezGene=11861|HGNC=|MCL_coexpression_id=0|UniProt=P61213|association_with_transcript=0bp_to_NM_001039515,uc007nkt.1_5end|description=CAGE_peak_2_at_Arl4a_5end|id=chr12:40764506..40764600,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002020!1.06e-10!34;UBERON:0002791!5.36e-08!29;UBERON:0003528!5.36e-08!29;UBERON:0001893!5.36e-08!29;UBERON:0002619!6.63e-08!17;UBERON:0004121!9.00e-08!102;UBERON:0000924!9.00e-08!102;UBERON:0006601!9.00e-08!102;UBERON:0001049!1.32e-07!52;UBERON:0005068!1.32e-07!52;UBERON:0006241!1.32e-07!52;UBERON:0007135!1.32e-07!52;UBERON:0001017!1.39e-07!73;UBERON:0005743!1.39e-07!73;UBERON:0002021!2.17e-07!10;UBERON:0000411!2.17e-07!10;UBERON:0001950!2.17e-07!10;UBERON:0000073!5.45e-07!75;UBERON:0001016!5.45e-07!75|ontology_enrichment_uberon_v019_2=UBERON:0002020,1.06e-10,34;UBERON:0010371,4.28e-08,73;UBERON:0003528,5.36e-08,29;UBERON:0002791,5.36e-08,29;UBERON:0001893,5.36e-08,29;UBERON:0004121,5.96e-08,95;UBERON:0000924,5.96e-08,95;UBERON:0006601,5.96e-08,95;UBERON:0002619,6.63e-08,17;UBERON:0000073,8.52e-08,54;UBERON:0001049,1.32e-07,52;UBERON:0005068,1.32e-07,52;UBERON:0006241,1.32e-07,52;UBERON:0007135,1.32e-07,52;UBERON:0010314,1.34e-07,92;UBERON:0001017,1.39e-07,73;UBERON:0002021,2.17e-07,10;UBERON:0000411,2.17e-07,10;UBERON:0001950,2.17e-07,10;UBERON:0001016,5.45e-07,75;UBERON:0002346,6.29e-07,64;UBERON:0003075,6.29e-07,64;UBERON:0007284,6.29e-07,64|phase1_expression=45.1619748835519,7.67745896806594,12.739978702907,10.2837831844322,11.0197060588196,3.02182689441402,2.80335168714631,6.97265946584512,9.29205566201001,9.59664557920173,3.08192342805909,4.14815226775749,5.64962408772979,8.30493822980475,22.9845735652807,19.4376256694233,26.5833513688696,5.67831897644828,5.89592064504677,8.91218268775863,153.758268593134,4.96454756004426,2.61199789138935,2.71987118748791,2.75291137280604,9.76194338995534,6.03066794622705,3.44753972297422,4.75058548640935,1.76421090831952,5.54326276638262,3.17515336729816,3.69038872550742,0,2.59966457776147,2.49351968037739,2.45003227514843,1.67412652294763,2.3440060335714,2.09409497589519,1.17646297606203,2.04913645487534,1.94204141212461,2.39203954153597,2.43304634926835,1.65192076945513,6.25913075478431,16.133861572153,13.8402295122717,15.5543919259427,30.9369991792051,14.3752564364972,12.4159128482725,7.97898356212479,13.1076581665561,8.2323019531503,12.6074713573053,12.3761302146586,26.7057728334669,32.268449735594,38.0298842103708,12.5372476865579,14.2287167377782,4.49949858640699,6.92206453796882,7.8152812644071,7.78960287347852,6.91592949578798,5.28817022773236,5.67024940993101,7.99234853135252,40.5624397853401,34.0137553065485,16.046294697159,14.6643570657902,20.2228133054205,17.6185409599022,15.3224805702225,14.1318010595744,39.3021137435978,39.2481991054337,48.9658568323354,9.21303896704557,13.5063026407603,18.3357897332172,48.3190880176815,39.7216989429497,44.7358669980721,8.5570598466498,7.40601289046498,13.3337664802772,18.9293252935905,18.3592260101093,18.8896117073236,25.3412802804591,27.3296401129375,31.1786612692489,5.28333999991979,4.93593408745451,7.0667914902068,20.4222958676187,0,0,0,5.19578498426914,6.08063677140237,4.04419556011827,32.9991412388083,4.91981978929626,11.7269289861212,10.9295755862666,10.6562917409249,10.3776973765226,10.8520301197888,18.5790157274414,18.8499886994513,20.7643772896874,54.6585569157266,26.5383165584962,23.1326595424795,20.3174196983562,15.5160081003271,9.31958806090611,18.4451902117275,15.0801628905688,6.64188343542338,13.7787393181808,14.3976655438418,11.817531117795,8.38827580667007,25.1625331550245,51.5182843662744,30.9407289942252,35.5444485689159,11.8439185398949,23.6872244078926,26.9874314203338,17.6657898266332,5.30717792710717,9.6803253707778,7.67710613479952,13.3343220571414,12.4242869565691,14.0155480587215,23.2684827097541,16.5266699167456,14.4300655821982,15.0047955028629,4.095791865724,5.8622884852024,8.97350733236139,11.1789823538063,12.7901734643775,11.8405736617537,17.4914815946752,8.7575077400137,16.8531164955176,14.9261786126535,11.9348669746149,6.42089894860056,8.44293815931946,6.66229627405755,8.04932100989715,11.8058539048442,14.0383072727514,13.4869687955237,19.3156849007726,23.7033645005354,21.7219001885794,21.0134354021242,20.4293400055556,18.1287984407412,15.3685080703735,20.6677884890973,22.7113144449257,36.531137394646,3.63460661282178,6.87571473325215,4.47905326123991,7.19933682767359,8.24751752461397,9.27744213267376,9.33987784148455,11.223311940641,9.49058123089023,13.1759163779209,10.8074139784116,12.1363447945102,12.0877734013854,5.39291645192533,8.64552199498777,13.1433240347882,7.58671603812327,6.96915926919346,9.01661885384643,9.57161240872977,10.2794818198842,13.4660774189412,17.2635746349222,12.1040321343274,13.1878931386755,13.6970851953199,11.2651998293117,12.346537822991,11.4004217165658,14.8408994174003,17.0402501966342,11.0941493486112,11.2035374783825,12.9463261852865,21.0775794807546,10.7078951143352,5.75072826109418,7.07067800570156,14.6657706363843,15.6598904327209,10.0462551572271,26.0519501536218,14.2259956428286,7.39016505904891,4.88894929326078,5.26209765903083,4.22442446919304,6.86775655511445,8.33152743101048,23.4160377429359,16.8669604193624,15.9454576547118,16.2643864030637,14.5838350097007,11.0518388394173,15.1881511510587,12.0633027151418,16.3171705145613,40.324670387561,20.9711927191597,10.4357883492065,9.96299336033727,5.73772308818364,31.0539240461379,12.304820557234,9.37052986311932,11.4174400798383,7.16906393857656,6.01556420022464,10.4738316391868,10.9298889452221,10.5212108848072,14.2303600060748,22.4924921495265,12.6326675835359,10.1497394090335,33.7176005861903,17.8167732810338,21.2392221343941,7.04063844849446,3.62788268357701,10.1846743068185,9.15435867930396,13.2197113615889,10.3371317267288,13.4507479906677,13.9033977570041,14.8537276229834,9.48767477174989,15.470331487228,10.5536277783674,9.18311579559682,6.59729287292048,11.3598628566744,11.3497749531055,13.5560301377574,17.1130981426206,11.2652031172402,26.0485595950719,10.3797714723272,4.19003956304428,10.2229476823718,28.7406679518712,15.5607346314642,10.6241386162791,8.37118588699812,9.03590593552537,14.8340241608408,12.815316059839,9.90656966223468,10.926477114813,15.25784501738,16.9500842374071,13.7266903923914,11.3885548095883,15.8145141125734,14.3727972756601,8.59203556213602,4.27053591334533,9.75933442208874,8.7484326065659,9.40897332065109,8.29777742235475,14.0258920240214,14.7949685748351,4.71160695571253,15.5537967950151,8.07741107013003,957.150609885755,8.07389348637486,9.76205093696876,24.306398543006,17.5657359929714,19.0920421804579,21.476374672173,22.5253585780034,18.2455259300737,245.932635000874,482.162230475667,7.90027801570446,4.86540516696394,5.03283690107653,4.15746633528944,5.19177417435696,5.96044064343795,6.00977247599844,5.1691334511102,7.57248374611107,7.16343982556999,7.66279007039988,6.04238860586465,6.15755786498109,7.83075244616512,18.1384306892169,3.10780334723691,9.240527230776,3.69346156000973,15.8415467106396,16.8914227906064,9.70703608616505,5.78794623513478,5.01572104035363,53.6514250486213,48.7944750697608,48.6961186423487,62.2108520084149,37.6795385873853,47.5898155355511,48.60162001669,36.0256962579376,29.4542565839733,32.1011393286128,7.5764763736449,13.9658705690361,10.9269507682646,14.5864030240976,14.8825345465867,18.3843508450014,21.1134391411534,19.1612603232172,19.8969909946925,18.4468964587572,18.5039888919875,17.9195024316772,19.1965090313259,17.8630175209585,17.9198663141513,23.8146845641537,25.1468987300336,17.5547390621972,22.2526386433786,15.4558866141117,15.7719856097291,21.6520483514392,16.6905332963125,20.2031519118937,18.6336573222355,18.2767553046021,20.122077016005,15.5211129748327,18.7409677107289,14.0285567914435,20.8797631898546,24.7246250762664,20.0523211153148,19.2121683070598,14.8538090455479,12.7403394748352,12.8662384644975,18.9086527562503,33.4754581120476,21.838550492832,26.8966689319689|short_description=p2@Arl4a}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:11861 | |||
|HGNC= | |||
|MCL_coexpression_id=0 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:P61213 | |||
|association_with_transcript=0bp_to_NM_001039515,uc007nkt.1_5end | |||
|cluster_id=chr12:40764506..40764600,- | |||
|description=CAGE_peak_2_at_Arl4a_5end | |||
|id=chr12:40764506..40764600,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002020!1.06e-10!34;UBERON:0002791!5.36e-08!29;UBERON:0003528!5.36e-08!29;UBERON:0001893!5.36e-08!29;UBERON:0002619!6.63e-08!17;UBERON:0004121!9.00e-08!102;UBERON:0000924!9.00e-08!102;UBERON:0006601!9.00e-08!102;UBERON:0001049!1.32e-07!52;UBERON:0005068!1.32e-07!52;UBERON:0006241!1.32e-07!52;UBERON:0007135!1.32e-07!52;UBERON:0001017!1.39e-07!73;UBERON:0005743!1.39e-07!73;UBERON:0002021!2.17e-07!10;UBERON:0000411!2.17e-07!10;UBERON:0001950!2.17e-07!10;UBERON:0000073!5.45e-07!75;UBERON:0001016!5.45e-07!75 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002020,1.06e-10,34;UBERON:0010371,4.28e-08,73;UBERON:0003528,5.36e-08,29;UBERON:0002791,5.36e-08,29;UBERON:0001893,5.36e-08,29;UBERON:0004121,5.96e-08,95;UBERON:0000924,5.96e-08,95;UBERON:0006601,5.96e-08,95;UBERON:0002619,6.63e-08,17;UBERON:0000073,8.52e-08,54;UBERON:0001049,1.32e-07,52;UBERON:0005068,1.32e-07,52;UBERON:0006241,1.32e-07,52;UBERON:0007135,1.32e-07,52;UBERON:0010314,1.34e-07,92;UBERON:0001017,1.39e-07,73;UBERON:0002021,2.17e-07,10;UBERON:0000411,2.17e-07,10;UBERON:0001950,2.17e-07,10;UBERON:0001016,5.45e-07,75;UBERON:0002346,6.29e-07,64;UBERON:0003075,6.29e-07,64;UBERON:0007284,6.29e-07,64 | |||
|phase1_expression=45.1619748835519,7.67745896806594,12.739978702907,10.2837831844322,11.0197060588196,3.02182689441402,2.80335168714631,6.97265946584512,9.29205566201001,9.59664557920173,3.08192342805909,4.14815226775749,5.64962408772979,8.30493822980475,22.9845735652807,19.4376256694233,26.5833513688696,5.67831897644828,5.89592064504677,8.91218268775863,153.758268593134,4.96454756004426,2.61199789138935,2.71987118748791,2.75291137280604,9.76194338995534,6.03066794622705,3.44753972297422,4.75058548640935,1.76421090831952,5.54326276638262,3.17515336729816,3.69038872550742,0,2.59966457776147,2.49351968037739,2.45003227514843,1.67412652294763,2.3440060335714,2.09409497589519,1.17646297606203,2.04913645487534,1.94204141212461,2.39203954153597,2.43304634926835,1.65192076945513,6.25913075478431,16.133861572153,13.8402295122717,15.5543919259427,30.9369991792051,14.3752564364972,12.4159128482725,7.97898356212479,13.1076581665561,8.2323019531503,12.6074713573053,12.3761302146586,26.7057728334669,32.268449735594,38.0298842103708,12.5372476865579,14.2287167377782,4.49949858640699,6.92206453796882,7.8152812644071,7.78960287347852,6.91592949578798,5.28817022773236,5.67024940993101,7.99234853135252,40.5624397853401,34.0137553065485,16.046294697159,14.6643570657902,20.2228133054205,17.6185409599022,15.3224805702225,14.1318010595744,39.3021137435978,39.2481991054337,48.9658568323354,9.21303896704557,13.5063026407603,18.3357897332172,48.3190880176815,39.7216989429497,44.7358669980721,8.5570598466498,7.40601289046498,13.3337664802772,18.9293252935905,18.3592260101093,18.8896117073236,25.3412802804591,27.3296401129375,31.1786612692489,5.28333999991979,4.93593408745451,7.0667914902068,20.4222958676187,0,0,0,5.19578498426914,6.08063677140237,4.04419556011827,32.9991412388083,4.91981978929626,11.7269289861212,10.9295755862666,10.6562917409249,10.3776973765226,10.8520301197888,18.5790157274414,18.8499886994513,20.7643772896874,54.6585569157266,26.5383165584962,23.1326595424795,20.3174196983562,15.5160081003271,9.31958806090611,18.4451902117275,15.0801628905688,6.64188343542338,13.7787393181808,14.3976655438418,11.817531117795,8.38827580667007,25.1625331550245,51.5182843662744,30.9407289942252,35.5444485689159,11.8439185398949,23.6872244078926,26.9874314203338,17.6657898266332,5.30717792710717,9.6803253707778,7.67710613479952,13.3343220571414,12.4242869565691,14.0155480587215,23.2684827097541,16.5266699167456,14.4300655821982,15.0047955028629,4.095791865724,5.8622884852024,8.97350733236139,11.1789823538063,12.7901734643775,11.8405736617537,17.4914815946752,8.7575077400137,16.8531164955176,14.9261786126535,11.9348669746149,6.42089894860056,8.44293815931946,6.66229627405755,8.04932100989715,11.8058539048442,14.0383072727514,13.4869687955237,19.3156849007726,23.7033645005354,21.7219001885794,21.0134354021242,20.4293400055556,18.1287984407412,15.3685080703735,20.6677884890973,22.7113144449257,36.531137394646,3.63460661282178,6.87571473325215,4.47905326123991,7.19933682767359,8.24751752461397,9.27744213267376,9.33987784148455,11.223311940641,9.49058123089023,13.1759163779209,10.8074139784116,12.1363447945102,12.0877734013854,5.39291645192533,8.64552199498777,13.1433240347882,7.58671603812327,6.96915926919346,9.01661885384643,9.57161240872977,10.2794818198842,13.4660774189412,17.2635746349222,12.1040321343274,13.1878931386755,13.6970851953199,11.2651998293117,12.346537822991,11.4004217165658,14.8408994174003,17.0402501966342,11.0941493486112,11.2035374783825,12.9463261852865,21.0775794807546,10.7078951143352,5.75072826109418,7.07067800570156,14.6657706363843,15.6598904327209,10.0462551572271,26.0519501536218,14.2259956428286,7.39016505904891,4.88894929326078,5.26209765903083,4.22442446919304,6.86775655511445,8.33152743101048,23.4160377429359,16.8669604193624,15.9454576547118,16.2643864030637,14.5838350097007,11.0518388394173,15.1881511510587,12.0633027151418,16.3171705145613,40.324670387561,20.9711927191597,10.4357883492065,9.96299336033727,5.73772308818364,31.0539240461379,12.304820557234,9.37052986311932,11.4174400798383,7.16906393857656,6.01556420022464,10.4738316391868,10.9298889452221,10.5212108848072,14.2303600060748,22.4924921495265,12.6326675835359,10.1497394090335,33.7176005861903,17.8167732810338,21.2392221343941,7.04063844849446,3.62788268357701,10.1846743068185,9.15435867930396,13.2197113615889,10.3371317267288,13.4507479906677,13.9033977570041,14.8537276229834,9.48767477174989,15.470331487228,10.5536277783674,9.18311579559682,6.59729287292048,11.3598628566744,11.3497749531055,13.5560301377574,17.1130981426206,11.2652031172402,26.0485595950719,10.3797714723272,4.19003956304428,10.2229476823718,28.7406679518712,15.5607346314642,10.6241386162791,8.37118588699812,9.03590593552537,14.8340241608408,12.815316059839,9.90656966223468,10.926477114813,15.25784501738,16.9500842374071,13.7266903923914,11.3885548095883,15.8145141125734,14.3727972756601,8.59203556213602,4.27053591334533,9.75933442208874,8.7484326065659,9.40897332065109,8.29777742235475,14.0258920240214,14.7949685748351,4.71160695571253,15.5537967950151,8.07741107013003,957.150609885755,8.07389348637486,9.76205093696876,24.306398543006,17.5657359929714,19.0920421804579,21.476374672173,22.5253585780034,18.2455259300737,245.932635000874,482.162230475667,7.90027801570446,4.86540516696394,5.03283690107653,4.15746633528944,5.19177417435696,5.96044064343795,6.00977247599844,5.1691334511102,7.57248374611107,7.16343982556999,7.66279007039988,6.04238860586465,6.15755786498109,7.83075244616512,18.1384306892169,3.10780334723691,9.240527230776,3.69346156000973,15.8415467106396,16.8914227906064,9.70703608616505,5.78794623513478,5.01572104035363,53.6514250486213,48.7944750697608,48.6961186423487,62.2108520084149,37.6795385873853,47.5898155355511,48.60162001669,36.0256962579376,29.4542565839733,32.1011393286128,7.5764763736449,13.9658705690361,10.9269507682646,14.5864030240976,14.8825345465867,18.3843508450014,21.1134391411534,19.1612603232172,19.8969909946925,18.4468964587572,18.5039888919875,17.9195024316772,19.1965090313259,17.8630175209585,17.9198663141513,23.8146845641537,25.1468987300336,17.5547390621972,22.2526386433786,15.4558866141117,15.7719856097291,21.6520483514392,16.6905332963125,20.2031519118937,18.6336573222355,18.2767553046021,20.122077016005,15.5211129748327,18.7409677107289,14.0285567914435,20.8797631898546,24.7246250762664,20.0523211153148,19.2121683070598,14.8538090455479,12.7403394748352,12.8662384644975,18.9086527562503,33.4754581120476,21.838550492832,26.8966689319689 | |||
|short_description=p2@Arl4a | |||
}} |
Revision as of 01:02, 5 August 2015
Short description: | p2@Arl4a |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Arl4a_5end |
Coexpression cluster: | MCL_coexpression_mm9:0 |
Association with transcript: | 0bp_to_NM_001039515, uc007nkt.1_5end |
EntrezGene: | 11861 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
gray matter | 1.06e-10 | 34 |
ecto-epithelium | 4.28e-08 | 73 |
brain grey matter | 5.36e-08 | 29 |
regional part of telencephalon | 5.36e-08 | 29 |
telencephalon | 5.36e-08 | 29 |
ectoderm-derived structure | 5.96e-08 | 95 |
ectoderm | 5.96e-08 | 95 |
presumptive ectoderm | 5.96e-08 | 95 |
regional part of cerebral cortex | 6.63e-08 | 17 |
regional part of nervous system | 8.52e-08 | 54 |
neural tube | 1.32e-07 | 52 |
neural rod | 1.32e-07 | 52 |
future spinal cord | 1.32e-07 | 52 |
neural keel | 1.32e-07 | 52 |
structure with developmental contribution from neural crest | 1.34e-07 | 92 |
central nervous system | 1.39e-07 | 73 |
occipital lobe | 2.17e-07 | 10 |
visual cortex | 2.17e-07 | 10 |
neocortex | 2.17e-07 | 10 |
nervous system | 5.45e-07 | 75 |
neurectoderm | 6.29e-07 | 64 |
neural plate | 6.29e-07 | 64 |
presumptive neural plate | 6.29e-07 | 64 |