FFCP PHASE1:Mm9::chr1:193541949..193541969,+: Difference between revisions
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{{FFCP|EntrezGene=226856|HGNC=|MCL_coexpression_id=3259|UniProt=|association_with_transcript=43bp_to_ENSMUST00000138494_5end|description=CAGE_peak_4_at_Lpgat1_5end|id=chr1:193541949..193541969,+|ontology_enrichment_celltype=CL:0000117!4.11e-09!23;CL:0000337!4.11e-09!23;CL:0000540!7.34e-08!33;CL:0000047!7.34e-08!33;CL:0000031!7.34e-08!33;CL:0000404!7.34e-08!33|ontology_enrichment_celltype_v019_2=CL:0000117,1.32e-09,23;CL:0000337,1.32e-09,23;CL:0000540,1.12e-07,33;CL:0000047,1.12e-07,33;CL:0000031,1.12e-07,33;CL:0000404,1.12e-07,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000033!3.65e-15!63;UBERON:0001017!2.01e-14!73;UBERON:0005743!2.01e-14!73;UBERON:0001049!2.22e-14!52;UBERON:0005068!2.22e-14!52;UBERON:0006241!2.22e-14!52;UBERON:0007135!2.22e-14!52;UBERON:0000955!3.16e-14!50;UBERON:0006238!3.16e-14!50;UBERON:0000153!4.62e-14!94;UBERON:0003056!5.55e-14!49;UBERON:0002346!8.55e-14!71;UBERON:0003075!8.55e-14!71;UBERON:0007284!8.55e-14!71;UBERON:0002616!1.05e-13!49;UBERON:0000073!1.07e-13!75;UBERON:0001016!1.07e-13!75;UBERON:0007811!2.84e-12!86;UBERON:0004121!1.43e-11!102;UBERON:0000924!1.43e-11!102;UBERON:0006601!1.43e-11!102;UBERON:0002020!1.48e-11!34;UBERON:0003080!3.19e-11!40;UBERON:0002780!1.31e-10!39;UBERON:0001890!1.31e-10!39;UBERON:0006240!1.31e-10!39;UBERON:0002791!8.81e-10!29;UBERON:0003528!8.81e-10!29;UBERON:0001893!8.81e-10!29;UBERON:0000956!8.63e-07!21;UBERON:0001869!8.63e-07!21;UBERON:0000203!8.63e-07!21|ontology_enrichment_uberon_v019_2=UBERON:0002346,9.59e-19,64;UBERON:0003075,9.59e-19,64;UBERON:0007284,9.59e-19,64;UBERON:0000073,2.29e-17,54;UBERON:0001049,4.80e-16,52;UBERON:0005068,4.80e-16,52;UBERON:0006241,4.80e-16,52;UBERON:0007135,4.80e-16,52;UBERON:0010371,4.96e-16,73;UBERON:0001017,9.96e-16,73;UBERON:0003056,1.93e-15,49;UBERON:0004121,1.51e-14,95;UBERON:0000924,1.51e-14,95;UBERON:0006601,1.51e-14,95;UBERON:0001016,1.68e-14,75;UBERON:0010314,2.52e-14,92;UBERON:0000955,5.21e-14,47;UBERON:0006238,5.21e-14,47;UBERON:0002616,1.84e-13,46;UBERON:0002020,1.35e-12,34;UBERON:0003080,1.76e-12,40;UBERON:0002780,8.12e-12,39;UBERON:0001890,8.12e-12,39;UBERON:0006240,8.12e-12,39;UBERON:0003528,1.07e-10,29;UBERON:0002791,1.07e-10,29;UBERON:0001893,1.07e-10,29;UBERON:0000956,1.72e-07,21;UBERON:0001869,1.72e-07,21;UBERON:0000203,1.72e-07,21|phase1_expression=0.960893082628764,0,0,0.60492842261366,0,0.671517087647559,0.233612640595526,0.387369970324729,0.281577444303333,0.234064526321993,1.36974374580404,1.03703806693937,1.19840510951844,0.437102012094987,1.33243904726265,1.01237633694913,1.39912375625629,4.57420139769445,5.34746291062381,4.66828616977833,1.36069264241712,0.992909512008853,1.56719873483361,0.47997726838022,0.91763712426868,0,0,0,0,0,0,0,0,0,1.1554064790051,0.332469290716985,0.408338712524738,2.09265815368454,0,2.09409497589519,2.35292595212406,1.36609096991689,1.94204141212461,0.503587271902309,0.912392380975631,1.10128051297009,0,0.65407546914134,0,0.388859798148567,0.699932108126813,0,5.5368259999053,0.725362142011344,0.336093799142464,1.54355661621568,0.85960031981627,1.03134418455488,2.22548106945558,2.11596391708813,3.80298842103708,0.338844532069132,0,0.449949858640699,0,2.1314403448383,1.19840044207362,0,2.38486108309499,1.89008313664367,2.10324961351382,1.71390590642282,2.20868540951614,3.67472397644862,1.62937300731002,2.75765635983006,6.60695285996332,6.2566795661742,4.45458946443106,2.63772575460388,1.37231465403614,4.16730696445408,3.62937898701795,5.06486349028512,3.97275444219706,3.83017161115768,4.12877874317399,5.03278503728312,0.832988126665025,0.906858721281426,0.869593466105033,0.860423876981386,1.3599426674155,0,1.29955283489534,0,0.702222100658759,1.87473354835864,2.07828803682295,0.35333957451034,1.26759077799012,6.41632387071589,5.09610479413291,7.11066703153331,0.216491041011214,1.26679932737549,0,0.45673551887624,2.33044095282455,0.445326417194474,1.21439728736295,0.608930956624282,0.691846491768175,0.60289056221049,1.05829836422134,0.753999547978053,0.741584903203122,0.722996784599558,0.884610551949874,1.94120219936891,0.441683036920787,0.969750506270444,0,6.73395833126558,6.91174132484402,0.255457055208591,1.1981512450592,0.599902730993408,0.508280908292259,7.63932260964596,4.11750542536764,2.76439574648302,7.64827008846016,5.8814555185976,5.194701113989,6.48965052271031,1.83310854930569,1.24406970610093,0.505445516867349,1.89397670297827,2.08192708740326,3.44853156650209,2.34080768746954,1.80845781402858,2.51735046859913,2.562274405697,2.90475346135159,3.3631438196072,2.58681591519411,3.59301552318857,3.16712023495108,3.06874025398605,0.834141747676794,1.74126083261083,1.64625709126355,1.59227413454795,0,1.80143534980301,0.284163499395593,2.48550927042602,1.64168241986767,4.50155153652537,2.3674473558521,1.37734962223183,2.31400669331067,1.16266972375204,2.41446061259657,1.75148013550754,2.30383789878873,0.32833492815819,1.4592385718254,1.02339991197733,1.53685080703735,1.8788898626452,3.57492912559016,2.67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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:226856 | |||
|HGNC= | |||
|MCL_coexpression_id=3259 | |||
|TSSclassifier=NA | |||
|UniProt= | |||
|association_with_transcript=43bp_to_ENSMUST00000138494_5end | |||
|cluster_id=chr1:193541949..193541969,+ | |||
|description=CAGE_peak_4_at_Lpgat1_5end | |||
|id=chr1:193541949..193541969,+ | |||
|ontology_enrichment_celltype=CL:0000117!4.11e-09!23;CL:0000337!4.11e-09!23;CL:0000540!7.34e-08!33;CL:0000047!7.34e-08!33;CL:0000031!7.34e-08!33;CL:0000404!7.34e-08!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.32e-09,23;CL:0000337,1.32e-09,23;CL:0000540,1.12e-07,33;CL:0000047,1.12e-07,33;CL:0000031,1.12e-07,33;CL:0000404,1.12e-07,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000033!3.65e-15!63;UBERON:0001017!2.01e-14!73;UBERON:0005743!2.01e-14!73;UBERON:0001049!2.22e-14!52;UBERON:0005068!2.22e-14!52;UBERON:0006241!2.22e-14!52;UBERON:0007135!2.22e-14!52;UBERON:0000955!3.16e-14!50;UBERON:0006238!3.16e-14!50;UBERON:0000153!4.62e-14!94;UBERON:0003056!5.55e-14!49;UBERON:0002346!8.55e-14!71;UBERON:0003075!8.55e-14!71;UBERON:0007284!8.55e-14!71;UBERON:0002616!1.05e-13!49;UBERON:0000073!1.07e-13!75;UBERON:0001016!1.07e-13!75;UBERON:0007811!2.84e-12!86;UBERON:0004121!1.43e-11!102;UBERON:0000924!1.43e-11!102;UBERON:0006601!1.43e-11!102;UBERON:0002020!1.48e-11!34;UBERON:0003080!3.19e-11!40;UBERON:0002780!1.31e-10!39;UBERON:0001890!1.31e-10!39;UBERON:0006240!1.31e-10!39;UBERON:0002791!8.81e-10!29;UBERON:0003528!8.81e-10!29;UBERON:0001893!8.81e-10!29;UBERON:0000956!8.63e-07!21;UBERON:0001869!8.63e-07!21;UBERON:0000203!8.63e-07!21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,9.59e-19,64;UBERON:0003075,9.59e-19,64;UBERON:0007284,9.59e-19,64;UBERON:0000073,2.29e-17,54;UBERON:0001049,4.80e-16,52;UBERON:0005068,4.80e-16,52;UBERON:0006241,4.80e-16,52;UBERON:0007135,4.80e-16,52;UBERON:0010371,4.96e-16,73;UBERON:0001017,9.96e-16,73;UBERON:0003056,1.93e-15,49;UBERON:0004121,1.51e-14,95;UBERON:0000924,1.51e-14,95;UBERON:0006601,1.51e-14,95;UBERON:0001016,1.68e-14,75;UBERON:0010314,2.52e-14,92;UBERON:0000955,5.21e-14,47;UBERON:0006238,5.21e-14,47;UBERON:0002616,1.84e-13,46;UBERON:0002020,1.35e-12,34;UBERON:0003080,1.76e-12,40;UBERON:0002780,8.12e-12,39;UBERON:0001890,8.12e-12,39;UBERON:0006240,8.12e-12,39;UBERON:0003528,1.07e-10,29;UBERON:0002791,1.07e-10,29;UBERON:0001893,1.07e-10,29;UBERON:0000956,1.72e-07,21;UBERON:0001869,1.72e-07,21;UBERON:0000203,1.72e-07,21 | |||
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| |||
|short_description=p4@Lpgat1 | |||
}} |
Revision as of 12:23, 5 August 2015
Short description: | p4@Lpgat1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Lpgat1_5end |
Coexpression cluster: | MCL_coexpression_mm9:3259 |
Association with transcript: | 43bp_to_ENSMUST00000138494_5end |
EntrezGene: | 226856 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.32e-09 | 23 |
neuroblast (sensu Vertebrata) | 1.32e-09 | 23 |
neuron | 1.12e-07 | 33 |
neuronal stem cell | 1.12e-07 | 33 |
neuroblast | 1.12e-07 | 33 |
electrically signaling cell | 1.12e-07 | 33 |
Ontology term | p-value | n |
---|---|---|
neurectoderm | 9.59e-19 | 64 |
neural plate | 9.59e-19 | 64 |
presumptive neural plate | 9.59e-19 | 64 |
regional part of nervous system | 2.29e-17 | 54 |
neural tube | 4.80e-16 | 52 |
neural rod | 4.80e-16 | 52 |
future spinal cord | 4.80e-16 | 52 |
neural keel | 4.80e-16 | 52 |
ecto-epithelium | 4.96e-16 | 73 |
central nervous system | 9.96e-16 | 73 |
pre-chordal neural plate | 1.93e-15 | 49 |
ectoderm-derived structure | 1.51e-14 | 95 |
ectoderm | 1.51e-14 | 95 |
presumptive ectoderm | 1.51e-14 | 95 |
nervous system | 1.68e-14 | 75 |
structure with developmental contribution from neural crest | 2.52e-14 | 92 |
brain | 5.21e-14 | 47 |
future brain | 5.21e-14 | 47 |
regional part of brain | 1.84e-13 | 46 |
gray matter | 1.35e-12 | 34 |
anterior neural tube | 1.76e-12 | 40 |
regional part of forebrain | 8.12e-12 | 39 |
forebrain | 8.12e-12 | 39 |
future forebrain | 8.12e-12 | 39 |
brain grey matter | 1.07e-10 | 29 |
regional part of telencephalon | 1.07e-10 | 29 |
telencephalon | 1.07e-10 | 29 |
cerebral cortex | 1.72e-07 | 21 |
cerebral hemisphere | 1.72e-07 | 21 |
pallium | 1.72e-07 | 21 |