FFCP PHASE1:Mm9::chr4:98216369..98216408,+: Difference between revisions
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{{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=30|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr4:98216369..98216408,+|id=chr4:98216369..98216408,+|ontology_enrichment_celltype=CL:0000117!1.78e-07!23;CL:0000337!1.78e-07!23;CL:0002614!3.81e-07!3|ontology_enrichment_celltype_v019_2=CL:0002610,5.46e-07,3|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002616!8.56e-17!49;UBERON:0000955!2.41e-16!50;UBERON:0006238!2.41e-16!50;UBERON:0001049!2.01e-15!52;UBERON:0005068!2.01e-15!52;UBERON:0006241!2.01e-15!52;UBERON:0007135!2.01e-15!52;UBERON:0002298!2.54e-13!6;UBERON:0000033!3.50e-13!63;UBERON:0001017!7.02e-12!73;UBERON:0005743!7.02e-12!73;UBERON:0000073!2.11e-11!75;UBERON:0001016!2.11e-11!75;UBERON:0003080!4.32e-10!40;UBERON:0002346!8.09e-10!71;UBERON:0003075!8.09e-10!71;UBERON:0007284!8.09e-10!71;UBERON:0002950!2.48e-09!4;UBERON:0001891!2.48e-09!4;UBERON:0009616!2.48e-09!4;UBERON:0002780!6.83e-09!39;UBERON:0001890!6.83e-09!39;UBERON:0006240!6.83e-09!39;UBERON:0007811!3.85e-08!86;UBERON:0000153!7.70e-08!94;UBERON:0004121!1.11e-07!102;UBERON:0000924!1.11e-07!102;UBERON:0006601!1.11e-07!102;UBERON:0003056!1.49e-07!49;UBERON:0002038!3.81e-07!3;UBERON:0002308!3.81e-07!3;UBERON:0009663!3.81e-07!3;UBERON:0009661!3.81e-07!3;UBERON:0006331!3.81e-07!3;UBERON:0000125!3.81e-07!3|ontology_enrichment_uberon_v019_2=UBERON:0002259,1.16e-18,1;UBERON:0002314,1.16e-18,1;UBERON:0004061,1.16e-18,1;UBERON:0006777,1.16e-18,1;UBERON:0005882,1.16e-18,1;UBERON:0002037,1.16e-18,4;UBERON:0002680,1.16e-18,4;UBERON:0001895,1.16e-18,4;UBERON:0010092,1.16e-18,4;UBERON:0006215,1.16e-18,4;UBERON:0003076,5.92e-14,12;UBERON:0003057,5.92e-14,12;UBERON:0004733,8.26e-13,6;UBERON:0004732,8.26e-13,6;UBERON:0002028,8.26e-13,6;UBERON:0007277,8.26e-13,6;UBERON:0004684,5.46e-07,3;UBERON:0002275,5.46e-07,3|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.510259740906419,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207379224616955,0,0.210324961351382,0,0.220868540951614,0.122490799214954,0.191690942036473,0,0,1.40456071893706,0.614426133024974,0,0,0,0.558365998002762,0.56276261003168,0.15279824777681,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161766849947409,0.220841518460394,0,0,25.1791485429931,14.6612694769419,0,0,0,0,1.64769703345305,0.457500602818626,0,0.173824320192276,0,0.83115217823824,0.811206315338788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219195732427575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116765342367169,0,0,0,0,0,0,0,0.102904612379284,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199141273254367,0,0,0,0,0,0.0701358198903186,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.481651769963376,0.586058432961016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164970122972535,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.713475270408282,0.164549020602121,0,0,0,0,0,0,0,0,0,0,1.48340241608408,0,0,0,0,0,0,0,0,0,0,0,0,0,0.209088296014469,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.226730383615211,0,0,0,0.19318959403219,0,0,0,0,0,0.460325236507177,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0936415074698824,0,0.0574354689556133,0,0.115884325944855,0,0,0,0,0,0.238436189947321,0,0.0941093804153306,0.169229215783353,0,0,0.135804113845862,0,0.118635018124174,0,0,0.154936841185966,0,0,0,0,0,0,0|short_description=p@chr4:98216369..98216408,+}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=30 | |||
|TSSclassifier=NA | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr4:98216369..98216408,+ | |||
|description=CAGE_peak_at_chr4:98216369..98216408,+ | |||
|id=chr4:98216369..98216408,+ | |||
|ontology_enrichment_celltype=CL:0000117!1.78e-07!23;CL:0000337!1.78e-07!23;CL:0002614!3.81e-07!3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002610,5.46e-07,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002616!8.56e-17!49;UBERON:0000955!2.41e-16!50;UBERON:0006238!2.41e-16!50;UBERON:0001049!2.01e-15!52;UBERON:0005068!2.01e-15!52;UBERON:0006241!2.01e-15!52;UBERON:0007135!2.01e-15!52;UBERON:0002298!2.54e-13!6;UBERON:0000033!3.50e-13!63;UBERON:0001017!7.02e-12!73;UBERON:0005743!7.02e-12!73;UBERON:0000073!2.11e-11!75;UBERON:0001016!2.11e-11!75;UBERON:0003080!4.32e-10!40;UBERON:0002346!8.09e-10!71;UBERON:0003075!8.09e-10!71;UBERON:0007284!8.09e-10!71;UBERON:0002950!2.48e-09!4;UBERON:0001891!2.48e-09!4;UBERON:0009616!2.48e-09!4;UBERON:0002780!6.83e-09!39;UBERON:0001890!6.83e-09!39;UBERON:0006240!6.83e-09!39;UBERON:0007811!3.85e-08!86;UBERON:0000153!7.70e-08!94;UBERON:0004121!1.11e-07!102;UBERON:0000924!1.11e-07!102;UBERON:0006601!1.11e-07!102;UBERON:0003056!1.49e-07!49;UBERON:0002038!3.81e-07!3;UBERON:0002308!3.81e-07!3;UBERON:0009663!3.81e-07!3;UBERON:0009661!3.81e-07!3;UBERON:0006331!3.81e-07!3;UBERON:0000125!3.81e-07!3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002259,1.16e-18,1;UBERON:0002314,1.16e-18,1;UBERON:0004061,1.16e-18,1;UBERON:0006777,1.16e-18,1;UBERON:0005882,1.16e-18,1;UBERON:0002037,1.16e-18,4;UBERON:0002680,1.16e-18,4;UBERON:0001895,1.16e-18,4;UBERON:0010092,1.16e-18,4;UBERON:0006215,1.16e-18,4;UBERON:0003076,5.92e-14,12;UBERON:0003057,5.92e-14,12;UBERON:0004733,8.26e-13,6;UBERON:0004732,8.26e-13,6;UBERON:0002028,8.26e-13,6;UBERON:0007277,8.26e-13,6;UBERON:0004684,5.46e-07,3;UBERON:0002275,5.46e-07,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.510259740906419,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207379224616955,0,0.210324961351382,0,0.220868540951614,0.122490799214954,0.191690942036473,0,0,1.40456071893706,0.614426133024974,0,0,0,0.558365998002762,0.56276261003168,0.15279824777681,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161766849947409,0.220841518460394,0,0,25.1791485429931,14.6612694769419,0,0,0,0,1.64769703345305,0.457500602818626,0,0.173824320192276,0,0.83115217823824,0.811206315338788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219195732427575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116765342367169,0,0,0,0,0,0,0,0.102904612379284,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199141273254367,0,0,0,0,0,0.0701358198903186,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.481651769963376,0.586058432961016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164970122972535,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.713475270408282,0.164549020602121,0,0,0,0,0,0,0,0,0,0,1.48340241608408,0,0,0,0,0,0,0,0,0,0,0,0,0,0.209088296014469,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.226730383615211,0,0,0,0.19318959403219,0,0,0,0,0,0.460325236507177,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0936415074698824,0,0.0574354689556133,0,0.115884325944855,0,0,0,0,0,0.238436189947321,0,0.0941093804153306,0.169229215783353,0,0,0.135804113845862,0,0.118635018124174,0,0,0.154936841185966,0,0,0,0,0,0,0 | |||
|short_description=p@chr4:98216369..98216408,+ | |||
}} |
Latest revision as of 20:40, 5 August 2015
Short description: | p@chr4:98216369..98216408, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr4:98216369..98216408, + |
Coexpression cluster: | MCL_coexpression_mm9:30 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
raphe nuclei neuron | 5.46e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
corpora quadrigemina | 1.16e-18 | 1 |
midbrain tectum | 1.16e-18 | 1 |
neural tube mantle layer | 1.16e-18 | 1 |
tectal plate | 1.16e-18 | 1 |
neural tube alar plate | 1.16e-18 | 1 |
cerebellum | 1.16e-18 | 4 |
regional part of metencephalon | 1.16e-18 | 4 |
metencephalon | 1.16e-18 | 4 |
future metencephalon | 1.16e-18 | 4 |
rhombic lip | 1.16e-18 | 4 |
posterior neural tube | 5.92e-14 | 12 |
chordal neural plate | 5.92e-14 | 12 |
segmental subdivision of hindbrain | 8.26e-13 | 6 |
segmental subdivision of nervous system | 8.26e-13 | 6 |
hindbrain | 8.26e-13 | 6 |
presumptive hindbrain | 8.26e-13 | 6 |
raphe nuclei | 5.46e-07 | 3 |
reticular formation | 5.46e-07 | 3 |