FFCP PHASE1:Mm9::chr13:51889019..51889082,-: Difference between revisions
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{{FFCP|EntrezGene=20354|HGNC=|UniProt=O09126,E9Q388|association_with_transcript=0bp_to_ENSMUST00000110040,ENSMUST00000155896,ENSMUST00000163108_5end|description=CAGE_peak_1_at_Sema4d_5end|id=chr13:51889019..51889082,-|ontology_enrichment_celltype=CL:0002031!1.30e-10!25;CL:0000988!7.77e-10!32;CL:0002032!7.77e-10!32;CL:0000037!7.77e-10!32;CL:0000566!7.77e-10!32;CL:0000837!7.77e-10!32;CL:0000838!7.54e-09!12;CL:0000084!2.59e-08!11;CL:0000827!2.59e-08!11;CL:0000542!9.57e-08!13;CL:0000051!9.57e-08!13;CL:0000738!2.59e-07!17;CL:0002087!2.59e-07!17;CL:0000791!3.81e-07!9;CL:0000789!3.81e-07!9;CL:0002420!3.81e-07!9;CL:0002419!3.81e-07!9;CL:0000790!3.81e-07!9|ontology_enrichment_celltype_v019_2=CL:0002031,1.30e-10,25;CL:0000988,7.75e-10,32;CL:0002032,7.75e-10,32;CL:0000037,7.75e-10,32;CL:0000837,7.75e-10,32;CL:0000838,7.53e-09,12;CL:0000084,2.59e-08,11;CL:0000827,2.59e-08,11;CL:0000542,9.56e-08,13;CL:0000051,9.56e-08,13;CL:0000738,2.59e-07,17;CL:0002087,2.59e-07,17;CL:0000791,3.81e-07,9;CL:0000789,3.81e-07,9;CL:0002420,3.81e-07,9;CL:0002419,3.81e-07,9;CL:0000790,3.81e-07,9|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007811!1.56e-15!86;UBERON:0000153!1.12e-12!94;UBERON:0002193!2.73e-10!48;UBERON:0002390!8.49e-10!45;UBERON:0003061!8.49e-10!45;UBERON:0004177!1.65e-08!29;UBERON:0006562!1.83e-08!24;UBERON:0001557!1.83e-08!24;UBERON:0001042!1.83e-08!24;UBERON:0008814!1.83e-08!24;UBERON:0009145!1.83e-08!24;UBERON:0003408!2.29e-08!24;UBERON:0002370!2.91e-08!23;UBERON:0000974!2.91e-08!23;UBERON:0004807!2.91e-08!23;UBERON:0005058!2.91e-08!23;UBERON:0003351!2.91e-08!23;UBERON:0009113!2.91e-08!23;UBERON:0003295!2.91e-08!23;UBERON:0009722!2.91e-08!23;UBERON:0005562!2.91e-08!23;UBERON:0007690!2.91e-08!23;UBERON:0000033!3.16e-08!63;UBERON:0000072!9.38e-08!27;UBERON:0000063!1.31e-07!35;UBERON:0001017!2.18e-07!73;UBERON:0005743!2.18e-07!73|ontology_enrichment_uberon_v019_2=UBERON:0002193,2.48e-10,48;UBERON:0002405,2.48e-10,48;UBERON:0002390,7.73e-10,45;UBERON:0003061,7.73e-10,45;UBERON:0007811,9.25e-10,36;UBERON:0004121,8.96e-09,95;UBERON:0000924,8.96e-09,95;UBERON:0006601,8.96e-09,95;UBERON:0004177,1.49e-08,29;UBERON:0005057,1.49e-08,29;UBERON:0006562,1.64e-08,24;UBERON:0001557,1.64e-08,24;UBERON:0001042,1.64e-08,24;UBERON:0008814,1.64e-08,24;UBERON:0009145,1.64e-08,24;UBERON:0010371,1.80e-08,73;UBERON:0003408,2.05e-08,24;UBERON:0002346,2.44e-08,64;UBERON:0003075,2.44e-08,64;UBERON:0007284,2.44e-08,64;UBERON:0002370,2.60e-08,23;UBERON:0000974,2.60e-08,23;UBERON:0004807,2.60e-08,23;UBERON:0005058,2.60e-08,23;UBERON:0003351,2.60e-08,23;UBERON:0009113,2.60e-08,23;UBERON:0003295,2.60e-08,23;UBERON:0009722,2.60e-08,23;UBERON:0005562,2.60e-08,23;UBERON:0007690,2.60e-08,23;UBERON:0000077,5.72e-08,35;UBERON:0000072,8.48e-08,27;UBERON:0001017,2.18e-07,73|phase1_expression=9.44878197918284,2.44282785347553,2.27499619694768,0.30246421130683,0.500895729946347,9.23335995515394,10.7461814673942,166.052593945867,181.054296687043,198.252653794728,71.3978927500356,61.1054737904277,134.392572995996,143.107198759899,40.3062811796952,35.4331717932195,18.88817070946,92.4304144499636,97.625476727286,86.5754889667982,23.9822078226017,126.993126585932,72.874741169763,20.6390225403495,19.7291981717766,6.31655160526522,6.03066794622705,9.69620547086501,5.70070258369122,11.089325709437,12.6386391073524,53.9776072440687,46.7449238564273,15.8481681015439,11.8429164098023,9.97407872150954,13.0668388007916,66.5465292871683,39.8481025707138,40.3113282859825,75.2936304679698,63.5232301011354,56.804711304645,0.251793635951155,0,0.367093504323363,3.12956537739216,6.75877984779384,6.59058548203415,5.44403717407994,2.2397827460058,11.5002051491977,76.5088683623278,155.227498390428,106.877828127304,1.02903774414379,2.0057340795713,0.515672092277442,16.1853168687678,14.8117474196169,17.1134478946668,0.677689064138264,0,17.5480444869873,13.8441290759376,22.7353636782752,28.4620104992484,32.2743376470106,24.3670588924922,24.1660629613726,25.4493203235172,45.9898084890124,35.3389665522582,11.7591167246356,12.555756703389,21.1420320920305,45.1475112097494,51.9687466006714,41.4737639791857,18.5959665699573,18.1145534332771,19.2737947106001,51.0904888172527,39.9561453122493,45.9922725808198,24.1595440088408,16.657486653495,20.3175395949578,2.49896437999507,3.55186332501892,10.4351215932604,1.72084775396277,0.679971333707751,1.07940638327563,0,0,27.6675507659551,0,0,0,20.1406090280653,0,0,0,16.4533191168523,16.4683912558814,16.6823066854878,14.7297204837587,82.3422469998006,11.5784868470563,5.72501578328248,6.69824052286711,7.37969591219387,6.93324146542064,8.11362079236363,6.03199638382442,5.6854842578906,5.35017620603673,50.4228014611428,41.2505467365893,40.6348393967124,50.4270263260631,13.0474232852686,77.0013496140369,65.7662659394249,18.3929079750186,55.9536631442648,26.3957201637099,30.2427140433894,45.3865637396613,40.7175536508578,17.2146462394624,34.9386883586476,39.8916113435316,43.2199132683885,61.4894387026801,6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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:20354 | |||
|HGNC= | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:O09126,uniprot:E9Q388 | |||
|association_with_transcript=0bp_to_ENSMUST00000110040,ENSMUST00000155896,ENSMUST00000163108_5end | |||
|cluster_id=chr13:51889019..51889082,- | |||
|description=CAGE_peak_1_at_Sema4d_5end | |||
|id=chr13:51889019..51889082,- | |||
|ontology_enrichment_celltype=CL:0002031!1.30e-10!25;CL:0000988!7.77e-10!32;CL:0002032!7.77e-10!32;CL:0000037!7.77e-10!32;CL:0000566!7.77e-10!32;CL:0000837!7.77e-10!32;CL:0000838!7.54e-09!12;CL:0000084!2.59e-08!11;CL:0000827!2.59e-08!11;CL:0000542!9.57e-08!13;CL:0000051!9.57e-08!13;CL:0000738!2.59e-07!17;CL:0002087!2.59e-07!17;CL:0000791!3.81e-07!9;CL:0000789!3.81e-07!9;CL:0002420!3.81e-07!9;CL:0002419!3.81e-07!9;CL:0000790!3.81e-07!9 | |||
|ontology_enrichment_celltype_v019_2=CL:0002031,1.30e-10,25;CL:0000988,7.75e-10,32;CL:0002032,7.75e-10,32;CL:0000037,7.75e-10,32;CL:0000837,7.75e-10,32;CL:0000838,7.53e-09,12;CL:0000084,2.59e-08,11;CL:0000827,2.59e-08,11;CL:0000542,9.56e-08,13;CL:0000051,9.56e-08,13;CL:0000738,2.59e-07,17;CL:0002087,2.59e-07,17;CL:0000791,3.81e-07,9;CL:0000789,3.81e-07,9;CL:0002420,3.81e-07,9;CL:0002419,3.81e-07,9;CL:0000790,3.81e-07,9 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007811!1.56e-15!86;UBERON:0000153!1.12e-12!94;UBERON:0002193!2.73e-10!48;UBERON:0002390!8.49e-10!45;UBERON:0003061!8.49e-10!45;UBERON:0004177!1.65e-08!29;UBERON:0006562!1.83e-08!24;UBERON:0001557!1.83e-08!24;UBERON:0001042!1.83e-08!24;UBERON:0008814!1.83e-08!24;UBERON:0009145!1.83e-08!24;UBERON:0003408!2.29e-08!24;UBERON:0002370!2.91e-08!23;UBERON:0000974!2.91e-08!23;UBERON:0004807!2.91e-08!23;UBERON:0005058!2.91e-08!23;UBERON:0003351!2.91e-08!23;UBERON:0009113!2.91e-08!23;UBERON:0003295!2.91e-08!23;UBERON:0009722!2.91e-08!23;UBERON:0005562!2.91e-08!23;UBERON:0007690!2.91e-08!23;UBERON:0000033!3.16e-08!63;UBERON:0000072!9.38e-08!27;UBERON:0000063!1.31e-07!35;UBERON:0001017!2.18e-07!73;UBERON:0005743!2.18e-07!73 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,2.48e-10,48;UBERON:0002405,2.48e-10,48;UBERON:0002390,7.73e-10,45;UBERON:0003061,7.73e-10,45;UBERON:0007811,9.25e-10,36;UBERON:0004121,8.96e-09,95;UBERON:0000924,8.96e-09,95;UBERON:0006601,8.96e-09,95;UBERON:0004177,1.49e-08,29;UBERON:0005057,1.49e-08,29;UBERON:0006562,1.64e-08,24;UBERON:0001557,1.64e-08,24;UBERON:0001042,1.64e-08,24;UBERON:0008814,1.64e-08,24;UBERON:0009145,1.64e-08,24;UBERON:0010371,1.80e-08,73;UBERON:0003408,2.05e-08,24;UBERON:0002346,2.44e-08,64;UBERON:0003075,2.44e-08,64;UBERON:0007284,2.44e-08,64;UBERON:0002370,2.60e-08,23;UBERON:0000974,2.60e-08,23;UBERON:0004807,2.60e-08,23;UBERON:0005058,2.60e-08,23;UBERON:0003351,2.60e-08,23;UBERON:0009113,2.60e-08,23;UBERON:0003295,2.60e-08,23;UBERON:0009722,2.60e-08,23;UBERON:0005562,2.60e-08,23;UBERON:0007690,2.60e-08,23;UBERON:0000077,5.72e-08,35;UBERON:0000072,8.48e-08,27;UBERON:0001017,2.18e-07,73 | |||
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| |||
|short_description=p1@Sema4d | |||
}} |
Revision as of 02:32, 6 August 2015
Short description: | p1@Sema4d |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Sema4d_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENSMUST00000110040, ENSMUST00000155896, ENSMUST00000163108_5end |
EntrezGene: | 20354 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic lineage restricted progenitor cell | 1.30e-10 | 25 |
hematopoietic cell | 7.75e-10 | 32 |
hematopoietic oligopotent progenitor cell | 7.75e-10 | 32 |
hematopoietic stem cell | 7.75e-10 | 32 |
hematopoietic multipotent progenitor cell | 7.75e-10 | 32 |
lymphoid lineage restricted progenitor cell | 7.53e-09 | 12 |
T cell | 2.59e-08 | 11 |
pro-T cell | 2.59e-08 | 11 |
lymphocyte | 9.56e-08 | 13 |
common lymphoid progenitor | 9.56e-08 | 13 |
leukocyte | 2.59e-07 | 17 |
nongranular leukocyte | 2.59e-07 | 17 |
mature alpha-beta T cell | 3.81e-07 | 9 |
alpha-beta T cell | 3.81e-07 | 9 |
immature T cell | 3.81e-07 | 9 |
mature T cell | 3.81e-07 | 9 |
immature alpha-beta T cell | 3.81e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 2.48e-10 | 48 |
immune system | 2.48e-10 | 48 |
hematopoietic system | 7.73e-10 | 45 |
blood island | 7.73e-10 | 45 |
craniocervical region | 9.25e-10 | 36 |
ectoderm-derived structure | 8.96e-09 | 95 |
ectoderm | 8.96e-09 | 95 |
presumptive ectoderm | 8.96e-09 | 95 |
hemopoietic organ | 1.49e-08 | 29 |
immune organ | 1.49e-08 | 29 |
pharynx | 1.64e-08 | 24 |
upper respiratory tract | 1.64e-08 | 24 |
chordate pharynx | 1.64e-08 | 24 |
pharyngeal arch system | 1.64e-08 | 24 |
pharyngeal region of foregut | 1.64e-08 | 24 |
ecto-epithelium | 1.80e-08 | 73 |
gland of gut | 2.05e-08 | 24 |
neurectoderm | 2.44e-08 | 64 |
neural plate | 2.44e-08 | 64 |
presumptive neural plate | 2.44e-08 | 64 |
thymus | 2.60e-08 | 23 |
neck | 2.60e-08 | 23 |
respiratory system epithelium | 2.60e-08 | 23 |
hemolymphoid system gland | 2.60e-08 | 23 |
pharyngeal epithelium | 2.60e-08 | 23 |
thymic region | 2.60e-08 | 23 |
pharyngeal gland | 2.60e-08 | 23 |
entire pharyngeal arch endoderm | 2.60e-08 | 23 |
thymus primordium | 2.60e-08 | 23 |
early pharyngeal endoderm | 2.60e-08 | 23 |
mixed endoderm/mesoderm-derived structure | 5.72e-08 | 35 |
segment of respiratory tract | 8.48e-08 | 27 |
central nervous system | 2.18e-07 | 73 |