FFCP PHASE1:Mm9::chr5:115879705..115879716,+: Difference between revisions
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{{FFCP|EntrezGene=17690|HGNC=|MCL_coexpression_id=53|UniProt=|association_with_transcript=0bp_to_ENSMUST00000151444_5end|description=CAGE_peak_8_at_Msi1_5end|id=chr5:115879705..115879716,+|ontology_enrichment_celltype=CL:0000221!1.65e-09!44;CL:0000133!1.65e-09!44;CL:0002319!6.95e-09!43;CL:0000540!2.49e-07!33;CL:0000047!2.49e-07!33;CL:0000031!2.49e-07!33;CL:0000404!2.49e-07!33;CL:0000117!6.64e-07!23;CL:0000337!6.64e-07!23|ontology_enrichment_celltype_v019_2=CL:0002609,1.09e-10,6;CL:0000117,2.68e-09,23;CL:0000337,2.68e-09,23;CL:0000221,1.24e-08,44;CL:0000133,1.24e-08,44;CL:0000120,2.28e-08,3;CL:0002319,1.77e-07,43;CL:0000540,3.45e-07,33;CL:0000047,3.45e-07,33;CL:0000031,3.45e-07,33;CL:0000404,3.45e-07,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0003056!6.90e-19!49;UBERON:0000033!1.54e-18!63;UBERON:0004121!3.56e-18!102;UBERON:0000924!3.56e-18!102;UBERON:0006601!3.56e-18!102;UBERON:0001017!2.74e-16!73;UBERON:0005743!2.74e-16!73;UBERON:0002346!5.79e-16!71;UBERON:0003075!5.79e-16!71;UBERON:0007284!5.79e-16!71;UBERON:0000073!2.75e-15!75;UBERON:0001016!2.75e-15!75;UBERON:0003080!3.11e-12!40;UBERON:0000955!5.01e-12!50;UBERON:0006238!5.01e-12!50;UBERON:0001049!6.95e-12!52;UBERON:0005068!6.95e-12!52;UBERON:0006241!6.95e-12!52;UBERON:0007135!6.95e-12!52;UBERON:0002780!1.21e-11!39;UBERON:0001890!1.21e-11!39;UBERON:0006240!1.21e-11!39;UBERON:0002616!1.46e-11!49;UBERON:0007811!8.34e-11!86;UBERON:0000153!5.45e-10!94;UBERON:0000020!1.02e-08!12;UBERON:0001032!1.02e-08!12;UBERON:0004456!1.02e-08!12;UBERON:0000970!1.60e-08!9;UBERON:0000019!1.60e-08!9;UBERON:0000047!1.60e-08!9;UBERON:0004088!1.60e-08!9;UBERON:0002104!1.60e-08!9;UBERON:0001456!1.60e-08!9;UBERON:0003072!1.60e-08!9;UBERON:0003071!1.60e-08!9;UBERON:0004128!1.60e-08!9;UBERON:0005085!1.14e-07!13;UBERON:0001894!8.43e-07!10;UBERON:0006222!8.43e-07!10|ontology_enrichment_uberon_v019_2=UBERON:0000020,2.88e-22,12;UBERON:0001032,2.88e-22,12;UBERON:0004456,2.88e-22,12;UBERON:0000033,2.17e-20,13;UBERON:0005085,2.17e-20,13;UBERON:0000970,6.26e-20,9;UBERON:0000019,6.26e-20,9;UBERON:0000047,6.26e-20,9;UBERON:0010312,6.26e-20,9;UBERON:0004088,6.26e-20,9;UBERON:0002104,6.26e-20,9;UBERON:0001456,6.26e-20,9;UBERON:0003072,6.26e-20,9;UBERON:0004128,6.26e-20,9;UBERON:0003071,6.26e-20,9;UBERON:0003056,1.30e-19,49;UBERON:0004121,2.06e-16,95;UBERON:0000924,2.06e-16,95;UBERON:0006601,2.06e-16,95;UBERON:0001444,4.91e-16,11;UBERON:0010371,5.57e-16,73;UBERON:0002346,1.65e-15,64;UBERON:0003075,1.65e-15,64;UBERON:0007284,1.65e-15,64;UBERON:0010314,1.44e-11,92;UBERON:0001017,1.74e-08,73;UBERON:0001016,3.76e-08,75;UBERON:0003080,4.99e-08,40;UBERON:0002780,4.86e-07,39;UBERON:0001890,4.86e-07,39;UBERON:0006240,4.86e-07,39|phase1_expression=1.12104192973356,0,0,0.30246421130683,0,0.33575854382378,0.467225281191051,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,0.159992422793407,0,0,0,0.215471232685889,0,0,0.221730510655305,0,0,0,0.866554859253824,0.332469290716985,0.204169356262369,0,0,0,0,0,0,0,0.101376931219515,0,0,0.436050312760893,2.19686182734472,0.388859798148567,0.55994568650145,4.31257693094915,0,0,0,0,0,0,2.02316460859598,1.05798195854407,1.90149421051854,0.338844532069132,0.889294796111139,0,0,0,0.299600110518405,0.768436610643109,1.65903379693564,2.02508907497536,1.26194976810829,0,0,1.22490799214954,0.575072826109418,1.83843757322004,0,0.383062014255563,0,1.05509030184155,0.457438218012048,1.56274011167028,0.279182999001381,0.56276261003168,0.30559649555362,0,0.142371680799103,0.745597783301202,0,0,0,0,0,0,0,0,0,0,0,0,2.81686839553361,0,0,0,0,0,0,0,0,0,0.173485326766136,0,0,0,0,0.125666591329675,0,0,0,0.323533699894818,0.883366073841574,0,0,0.292780797011547,0.209446706813455,0.255457055208591,0,0,0,1.04853447583376,0,0.251308704225729,0.695297280769106,0.511430914660661,0.62336413367868,0.811206315338788,0.305518091550949,0.248813941220186,0,0.420883711772948,3.6433724029557,2.98872735763515,3.24111833649629,4.21973489940002,8.36848939561333,8.83984669965463,7.02762934197966,2.32833033665114,0.862271971731369,0.189106080167819,0,0,0.278047249225598,0,0,0,0,0,0,0.207125772535502,0,0,0,0,0,0,0,0.116765342367169,0,0,0,0,0,0,0.210289948564127,0.514523061896422,0,0.264450566663544,0.213288250535234,0.232236671860439,0.128867461322093,0,0,0.570676878337677,0,0,0,0,0.38992817423824,0,0,0,0.569003702859245,0.456994050438915,1.1270773567308,1.01825663922657,0,0.210407459670956,0.126473074248515,0,0,0,0,0.166845105716094,0.196558995113203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.162964976442026,0.169745085775188,0,0,0.238043640886014,0,0,0,0,0,0,0,0,0,0,0,0,0.820481806145422,0,0,0.631016438832513,0,0.861693590931196,0,0.445597348164788,0.566153061577665,0.404810701674894,0,0,0.642642632843614,0,0.35613120733451,0,0,0,0.971122544619926,0.302323556964751,0,0,0,0,0,0,0,0,0,0.340439605753788,1.62054984628179,1.29358683782755,1.50035924522115,0.709360934569094,0.356737635204141,1.31639216481697,0.913394847343798,0,0,0,0.16488625294148,0.161464426695906,0,0.358117032009409,0.328281799490123,0,1.66882771809459,0,0,0,0,0,0,0,0,0,0,0.474503990371703,0.406638934253697,0,0,0,0,0,0,0.129614973291793,0,0,1.04661582230785,0.66183396182839,0.388902376688095,0.258319646955462,0.168956125490778,0.821500670520278,0.911430693907651,1.15345278868282,0.966336483304024,1.15212002503146,0,0.202725215290164,0,0,0,0.39736270956253,0.120195449519969,0,0,0,0,0.0974578807397524,0,0.116876902181569,0,0,0,0,0,0,0.183151624267265,0,0,0,0.920650473014354,0,0.171853182343688,0,0,0,0,0.453142408984205,0.51776031175182,1.66059756134683,1.59609949360412,0.853668028770671,0,0.209613162627982,0.183843508450014,0.222246727801615,0,0.320919209591815,0,0.25347929989024,0.188626341386076,0.0936415074698824,0.256100609619477,0,0.476293691283074,0,0,0,0,0,0.177475806159338,0,0,0.0941093804153306,0.169229215783353,0,0,0.135804113845862,0,0.355905054372522,0.197008964751127,0,0,0.192906610981141,0.499621155875892,0,0.214871054048298,0.191288332068843,0,0.231867835620421|short_description=p8@Msi1}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:17690 | |||
|HGNC= | |||
|MCL_coexpression_id=53 | |||
|TSSclassifier=NA | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENSMUST00000151444_5end | |||
|cluster_id=chr5:115879705..115879716,+ | |||
|description=CAGE_peak_8_at_Msi1_5end | |||
|id=chr5:115879705..115879716,+ | |||
|ontology_enrichment_celltype=CL:0000221!1.65e-09!44;CL:0000133!1.65e-09!44;CL:0002319!6.95e-09!43;CL:0000540!2.49e-07!33;CL:0000047!2.49e-07!33;CL:0000031!2.49e-07!33;CL:0000404!2.49e-07!33;CL:0000117!6.64e-07!23;CL:0000337!6.64e-07!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0002609,1.09e-10,6;CL:0000117,2.68e-09,23;CL:0000337,2.68e-09,23;CL:0000221,1.24e-08,44;CL:0000133,1.24e-08,44;CL:0000120,2.28e-08,3;CL:0002319,1.77e-07,43;CL:0000540,3.45e-07,33;CL:0000047,3.45e-07,33;CL:0000031,3.45e-07,33;CL:0000404,3.45e-07,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003056!6.90e-19!49;UBERON:0000033!1.54e-18!63;UBERON:0004121!3.56e-18!102;UBERON:0000924!3.56e-18!102;UBERON:0006601!3.56e-18!102;UBERON:0001017!2.74e-16!73;UBERON:0005743!2.74e-16!73;UBERON:0002346!5.79e-16!71;UBERON:0003075!5.79e-16!71;UBERON:0007284!5.79e-16!71;UBERON:0000073!2.75e-15!75;UBERON:0001016!2.75e-15!75;UBERON:0003080!3.11e-12!40;UBERON:0000955!5.01e-12!50;UBERON:0006238!5.01e-12!50;UBERON:0001049!6.95e-12!52;UBERON:0005068!6.95e-12!52;UBERON:0006241!6.95e-12!52;UBERON:0007135!6.95e-12!52;UBERON:0002780!1.21e-11!39;UBERON:0001890!1.21e-11!39;UBERON:0006240!1.21e-11!39;UBERON:0002616!1.46e-11!49;UBERON:0007811!8.34e-11!86;UBERON:0000153!5.45e-10!94;UBERON:0000020!1.02e-08!12;UBERON:0001032!1.02e-08!12;UBERON:0004456!1.02e-08!12;UBERON:0000970!1.60e-08!9;UBERON:0000019!1.60e-08!9;UBERON:0000047!1.60e-08!9;UBERON:0004088!1.60e-08!9;UBERON:0002104!1.60e-08!9;UBERON:0001456!1.60e-08!9;UBERON:0003072!1.60e-08!9;UBERON:0003071!1.60e-08!9;UBERON:0004128!1.60e-08!9;UBERON:0005085!1.14e-07!13;UBERON:0001894!8.43e-07!10;UBERON:0006222!8.43e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000020,2.88e-22,12;UBERON:0001032,2.88e-22,12;UBERON:0004456,2.88e-22,12;UBERON:0000033,2.17e-20,13;UBERON:0005085,2.17e-20,13;UBERON:0000970,6.26e-20,9;UBERON:0000019,6.26e-20,9;UBERON:0000047,6.26e-20,9;UBERON:0010312,6.26e-20,9;UBERON:0004088,6.26e-20,9;UBERON:0002104,6.26e-20,9;UBERON:0001456,6.26e-20,9;UBERON:0003072,6.26e-20,9;UBERON:0004128,6.26e-20,9;UBERON:0003071,6.26e-20,9;UBERON:0003056,1.30e-19,49;UBERON:0004121,2.06e-16,95;UBERON:0000924,2.06e-16,95;UBERON:0006601,2.06e-16,95;UBERON:0001444,4.91e-16,11;UBERON:0010371,5.57e-16,73;UBERON:0002346,1.65e-15,64;UBERON:0003075,1.65e-15,64;UBERON:0007284,1.65e-15,64;UBERON:0010314,1.44e-11,92;UBERON:0001017,1.74e-08,73;UBERON:0001016,3.76e-08,75;UBERON:0003080,4.99e-08,40;UBERON:0002780,4.86e-07,39;UBERON:0001890,4.86e-07,39;UBERON:0006240,4.86e-07,39 | |||
|phase1_expression=1.12104192973356,0,0,0.30246421130683,0,0.33575854382378,0.467225281191051,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,0.159992422793407,0,0,0,0.215471232685889,0,0,0.221730510655305,0,0,0,0.866554859253824,0.332469290716985,0.204169356262369,0,0,0,0,0,0,0,0.101376931219515,0,0,0.436050312760893,2.19686182734472,0.388859798148567,0.55994568650145,4.31257693094915,0,0,0,0,0,0,2.02316460859598,1.05798195854407,1.90149421051854,0.338844532069132,0.889294796111139,0,0,0,0.299600110518405,0.768436610643109,1.65903379693564,2.02508907497536,1.26194976810829,0,0,1.22490799214954,0.575072826109418,1.83843757322004,0,0.383062014255563,0,1.05509030184155,0.457438218012048,1.56274011167028,0.279182999001381,0.56276261003168,0.30559649555362,0,0.142371680799103,0.745597783301202,0,0,0,0,0,0,0,0,0,0,0,0,2.81686839553361,0,0,0,0,0,0,0,0,0,0.173485326766136,0,0,0,0,0.125666591329675,0,0,0,0.323533699894818,0.883366073841574,0,0,0.292780797011547,0.209446706813455,0.255457055208591,0,0,0,1.04853447583376,0,0.251308704225729,0.695297280769106,0.511430914660661,0.62336413367868,0.811206315338788,0.305518091550949,0.248813941220186,0,0.420883711772948,3.6433724029557,2.98872735763515,3.24111833649629,4.21973489940002,8.36848939561333,8.83984669965463,7.02762934197966,2.32833033665114,0.862271971731369,0.189106080167819,0,0,0.278047249225598,0,0,0,0,0,0,0.207125772535502,0,0,0,0,0,0,0,0.116765342367169,0,0,0,0,0,0,0.210289948564127,0.514523061896422,0,0.264450566663544,0.213288250535234,0.232236671860439,0.128867461322093,0,0,0.570676878337677,0,0,0,0,0.38992817423824,0,0,0,0.569003702859245,0.456994050438915,1.1270773567308,1.01825663922657,0,0.210407459670956,0.126473074248515,0,0,0,0,0.166845105716094,0.196558995113203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.162964976442026,0.169745085775188,0,0,0.238043640886014,0,0,0,0,0,0,0,0,0,0,0,0,0.820481806145422,0,0,0.631016438832513,0,0.861693590931196,0,0.445597348164788,0.566153061577665,0.404810701674894,0,0,0.642642632843614,0,0.35613120733451,0,0,0,0.971122544619926,0.302323556964751,0,0,0,0,0,0,0,0,0,0.340439605753788,1.62054984628179,1.29358683782755,1.50035924522115,0.709360934569094,0.356737635204141,1.31639216481697,0.913394847343798,0,0,0,0.16488625294148,0.161464426695906,0,0.358117032009409,0.328281799490123,0,1.66882771809459,0,0,0,0,0,0,0,0,0,0,0.474503990371703,0.406638934253697,0,0,0,0,0,0,0.129614973291793,0,0,1.04661582230785,0.66183396182839,0.388902376688095,0.258319646955462,0.168956125490778,0.821500670520278,0.911430693907651,1.15345278868282,0.966336483304024,1.15212002503146,0,0.202725215290164,0,0,0,0.39736270956253,0.120195449519969,0,0,0,0,0.0974578807397524,0,0.116876902181569,0,0,0,0,0,0,0.183151624267265,0,0,0,0.920650473014354,0,0.171853182343688,0,0,0,0,0.453142408984205,0.51776031175182,1.66059756134683,1.59609949360412,0.853668028770671,0,0.209613162627982,0.183843508450014,0.222246727801615,0,0.320919209591815,0,0.25347929989024,0.188626341386076,0.0936415074698824,0.256100609619477,0,0.476293691283074,0,0,0,0,0,0.177475806159338,0,0,0.0941093804153306,0.169229215783353,0,0,0.135804113845862,0,0.355905054372522,0.197008964751127,0,0,0.192906610981141,0.499621155875892,0,0.214871054048298,0.191288332068843,0,0.231867835620421 | |||
|short_description=p8@Msi1 | |||
}} |
Revision as of 02:47, 6 August 2015
Short description: | p8@Msi1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_8_at_Msi1_5end |
Coexpression cluster: | MCL_coexpression_mm9:53 |
Association with transcript: | 0bp_to_ENSMUST00000151444_5end |
EntrezGene: | 17690 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron of cerebral cortex | 1.09e-10 | 6 |
CNS neuron (sensu Vertebrata) | 2.68e-09 | 23 |
neuroblast (sensu Vertebrata) | 2.68e-09 | 23 |
ectodermal cell | 1.24e-08 | 44 |
neurectodermal cell | 1.24e-08 | 44 |
granule cell | 2.28e-08 | 3 |
neural cell | 1.77e-07 | 43 |
neuron | 3.45e-07 | 33 |
neuronal stem cell | 3.45e-07 | 33 |
neuroblast | 3.45e-07 | 33 |
electrically signaling cell | 3.45e-07 | 33 |
Ontology term | p-value | n |
---|---|---|
sense organ | 2.88e-22 | 12 |
sensory system | 2.88e-22 | 12 |
entire sense organ system | 2.88e-22 | 12 |
head | 2.17e-20 | 13 |
ectodermal placode | 2.17e-20 | 13 |
eye | 6.26e-20 | 9 |
camera-type eye | 6.26e-20 | 9 |
simple eye | 6.26e-20 | 9 |
immature eye | 6.26e-20 | 9 |
ocular region | 6.26e-20 | 9 |
visual system | 6.26e-20 | 9 |
face | 6.26e-20 | 9 |
optic cup | 6.26e-20 | 9 |
optic vesicle | 6.26e-20 | 9 |
eye primordium | 6.26e-20 | 9 |
pre-chordal neural plate | 1.30e-19 | 49 |
ectoderm-derived structure | 2.06e-16 | 95 |
ectoderm | 2.06e-16 | 95 |
presumptive ectoderm | 2.06e-16 | 95 |
subdivision of head | 4.91e-16 | 11 |
ecto-epithelium | 5.57e-16 | 73 |
neurectoderm | 1.65e-15 | 64 |
neural plate | 1.65e-15 | 64 |
presumptive neural plate | 1.65e-15 | 64 |
structure with developmental contribution from neural crest | 1.44e-11 | 92 |
central nervous system | 1.74e-08 | 73 |
nervous system | 3.76e-08 | 75 |
anterior neural tube | 4.99e-08 | 40 |
regional part of forebrain | 4.86e-07 | 39 |
forebrain | 4.86e-07 | 39 |
future forebrain | 4.86e-07 | 39 |