FFCP PHASE1:Mm9::chr1:88479075..88479140,-: Difference between revisions
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{{FFCP|EntrezGene=18582|HGNC=|MCL_coexpression_id=1511|UniProt=O55057,Q3TDQ8|association_with_transcript=0bp_to_ENSMUST00000027444,ENSMUST00000146220,ENSMUST00000148683,ENSMUST00000150653,NM_008801,uc007bvq.1,uc011wok.1_5end|description=CAGE_peak_1_at_Pde6d_5end|id=chr1:88479075..88479140,-|ontology_enrichment_celltype=CL:0000221!1.51e-14!44;CL:0000133!1.51e-14!44;CL:0002319!5.55e-14!43;CL:0000055!1.23e-12!50;CL:0000117!2.72e-11!23;CL:0000337!2.72e-11!23;CL:0000540!9.93e-09!33;CL:0000047!9.93e-09!33;CL:0000031!9.93e-09!33;CL:0000404!9.93e-09!33;CL:0000393!2.75e-08!39;CL:0000211!2.75e-08!39;CL:0002321!4.18e-07!70;CL:0000220!4.18e-07!70;CL:0000333!6.79e-07!10;CL:0000095!6.79e-07!10;CL:0000243!6.79e-07!10;CL:0000123!6.79e-07!10;CL:0000125!6.79e-07!10;CL:0000030!6.79e-07!10;CL:0000339!6.79e-07!10|ontology_enrichment_celltype_v019_2=CL:0000221,1.51e-14,44;CL:0000133,1.51e-14,44;CL:0002319,5.55e-14,43;CL:0000117,2.72e-11,23;CL:0000337,2.72e-11,23;CL:0000540,9.93e-09,33;CL:0000047,9.93e-09,33;CL:0000031,9.93e-09,33;CL:0000404,9.93e-09,33;CL:0000393,2.75e-08,39;CL:0000211,2.75e-08,39;CL:0002321,4.16e-07,70;CL:0000333,6.79e-07,10;CL:0000095,6.79e-07,10;CL:0000243,6.79e-07,10;CL:0000123,6.79e-07,10;CL:0000125,6.79e-07,10;CL:0000030,6.79e-07,10;CL:0000339,6.79e-07,10|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!1.53e-20!75;UBERON:0001016!1.53e-20!75;UBERON:0001017!1.13e-19!73;UBERON:0005743!1.13e-19!73;UBERON:0001049!4.72e-17!52;UBERON:0005068!4.72e-17!52;UBERON:0006241!4.72e-17!52;UBERON:0007135!4.72e-17!52;UBERON:0000955!4.34e-14!50;UBERON:0006238!4.34e-14!50;UBERON:0002616!9.50e-14!49;UBERON:0002346!1.42e-13!71;UBERON:0003075!1.42e-13!71;UBERON:0007284!1.42e-13!71;UBERON:0000033!1.99e-13!63;UBERON:0004121!2.91e-13!102;UBERON:0000924!2.91e-13!102;UBERON:0006601!2.91e-13!102;UBERON:0002020!1.27e-11!34;UBERON:0003080!2.12e-11!40;UBERON:0002780!3.59e-11!39;UBERON:0001890!3.59e-11!39;UBERON:0006240!3.59e-11!39;UBERON:0003056!3.52e-10!49;UBERON:0002791!7.75e-09!29;UBERON:0003528!7.75e-09!29;UBERON:0001893!7.75e-09!29;UBERON:0003076!9.16e-07!12;UBERON:0003057!9.16e-07!12|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.53e-20,75;UBERON:0001017,1.13e-19,73;UBERON:0010314,1.57e-18,92;UBERON:0001049,4.72e-17,52;UBERON:0005068,4.72e-17,52;UBERON:0006241,4.72e-17,52;UBERON:0007135,4.72e-17,52;UBERON:0000073,1.09e-16,54;UBERON:0002346,4.04e-15,64;UBERON:0003075,4.04e-15,64;UBERON:0007284,4.04e-15,64;UBERON:0004121,2.88e-14,95;UBERON:0000924,2.88e-14,95;UBERON:0006601,2.88e-14,95;UBERON:0000955,4.98e-14,47;UBERON:0006238,4.98e-14,47;UBERON:0002616,1.09e-13,46;UBERON:0002020,1.27e-11,34;UBERON:0010371,1.45e-11,73;UBERON:0003080,2.12e-11,40;UBERON:0002780,3.59e-11,39;UBERON:0001890,3.59e-11,39;UBERON:0006240,3.59e-11,39;UBERON:0003056,3.52e-10,49;UBERON:0003528,7.75e-09,29;UBERON:0002791,7.75e-09,29;UBERON:0001893,7.75e-09,29;UBERON:0003076,9.16e-07,12;UBERON:0003057,9.16e-07,12|phase1_expression=29.4673878672821,18.1467211972468,13.1949779422965,4.23449895829562,6.51164448930251,9.56911849897772,5.84031601488814,4.77756296733832,0.563154888606667,0.70219357896598,1.36974374580404,2.31339261086476,3.59521532855532,4.19617931611188,3.33109761815663,3.64455481301687,8.39474253753776,4.88966356305268,6.58149281307546,2.54633791078818,19.6450000248971,5.56029326724958,7.31359409589019,4.31979541542198,5.50582274561208,14.3557991028755,14.2151458732495,9.69620547086501,6.46079626151671,8.31699428207772,8.42575940490158,4.44521471421742,5.53558308826113,0,5.19932915552294,6.98185510505668,8.77928231928187,20.5080499061085,13.2827008569046,13.6116173433188,9.41170380849623,15.7100461540443,20.8769451803396,7.67970589651021,9.12392380975631,7.52541683862894,26.6013057078333,25.5089432965122,16.9158360705543,18.6652703111312,19.4581126059254,25.8754615856949,6.71130424230945,6.5282592781021,4.36921938885203,9.00408026125814,10.0286703978565,5.67239301505187,20.8385954685386,13.2247744818008,13.9442908771359,17.2810711355257,34.6824970483344,20.2477436388315,1.97773272513395,17.0515227587064,28.4620104992484,45.721978333265,17.3161652555158,14.4456354014909,11.9885227970288,37.9915809257059,30.7007271922743,15.923803897944,20.5109307979026,11.9498442259303,3.30347642998166,18.8977260366078,16.4358990584181,15.4306956644327,29.7334841707831,12.5019208933622,23.451371916116,22.5105044012672,21.5445529365302,19.4454866412621,19.362548588678,18.0807462450542,11.5861075799772,14.81202578093,4.92769630792852,5.16254326188832,0,3.77792234146472,1.29955283489534,2.68816132258401,12.0782201313307,17.2134625803838,11.950156211732,13.0735642568826,19.5772353489586,6.41632387071589,7.64415719119937,7.11066703153331,4.97929394325792,5.32055717497707,2.52762222507392,6.16592950482924,6.47344709117929,6.08612770165782,9.02123699183906,7.00270600117925,8.07154240396205,9.49552635481522,4.58595957829249,6.03199638382442,4.94389935468748,4.48258006451726,6.19227386364912,9.22071044700232,8.39197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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:18582 | |||
|HGNC= | |||
|MCL_coexpression_id=1511 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:O55057,uniprot:Q3TDQ8 | |||
|association_with_transcript=0bp_to_ENSMUST00000027444,ENSMUST00000146220,ENSMUST00000148683,ENSMUST00000150653,NM_008801,uc007bvq.1,uc011wok.1_5end | |||
|cluster_id=chr1:88479075..88479140,- | |||
|description=CAGE_peak_1_at_Pde6d_5end | |||
|id=chr1:88479075..88479140,- | |||
|ontology_enrichment_celltype=CL:0000221!1.51e-14!44;CL:0000133!1.51e-14!44;CL:0002319!5.55e-14!43;CL:0000055!1.23e-12!50;CL:0000117!2.72e-11!23;CL:0000337!2.72e-11!23;CL:0000540!9.93e-09!33;CL:0000047!9.93e-09!33;CL:0000031!9.93e-09!33;CL:0000404!9.93e-09!33;CL:0000393!2.75e-08!39;CL:0000211!2.75e-08!39;CL:0002321!4.18e-07!70;CL:0000220!4.18e-07!70;CL:0000333!6.79e-07!10;CL:0000095!6.79e-07!10;CL:0000243!6.79e-07!10;CL:0000123!6.79e-07!10;CL:0000125!6.79e-07!10;CL:0000030!6.79e-07!10;CL:0000339!6.79e-07!10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,1.51e-14,44;CL:0000133,1.51e-14,44;CL:0002319,5.55e-14,43;CL:0000117,2.72e-11,23;CL:0000337,2.72e-11,23;CL:0000540,9.93e-09,33;CL:0000047,9.93e-09,33;CL:0000031,9.93e-09,33;CL:0000404,9.93e-09,33;CL:0000393,2.75e-08,39;CL:0000211,2.75e-08,39;CL:0002321,4.16e-07,70;CL:0000333,6.79e-07,10;CL:0000095,6.79e-07,10;CL:0000243,6.79e-07,10;CL:0000123,6.79e-07,10;CL:0000125,6.79e-07,10;CL:0000030,6.79e-07,10;CL:0000339,6.79e-07,10 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!1.53e-20!75;UBERON:0001016!1.53e-20!75;UBERON:0001017!1.13e-19!73;UBERON:0005743!1.13e-19!73;UBERON:0001049!4.72e-17!52;UBERON:0005068!4.72e-17!52;UBERON:0006241!4.72e-17!52;UBERON:0007135!4.72e-17!52;UBERON:0000955!4.34e-14!50;UBERON:0006238!4.34e-14!50;UBERON:0002616!9.50e-14!49;UBERON:0002346!1.42e-13!71;UBERON:0003075!1.42e-13!71;UBERON:0007284!1.42e-13!71;UBERON:0000033!1.99e-13!63;UBERON:0004121!2.91e-13!102;UBERON:0000924!2.91e-13!102;UBERON:0006601!2.91e-13!102;UBERON:0002020!1.27e-11!34;UBERON:0003080!2.12e-11!40;UBERON:0002780!3.59e-11!39;UBERON:0001890!3.59e-11!39;UBERON:0006240!3.59e-11!39;UBERON:0003056!3.52e-10!49;UBERON:0002791!7.75e-09!29;UBERON:0003528!7.75e-09!29;UBERON:0001893!7.75e-09!29;UBERON:0003076!9.16e-07!12;UBERON:0003057!9.16e-07!12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.53e-20,75;UBERON:0001017,1.13e-19,73;UBERON:0010314,1.57e-18,92;UBERON:0001049,4.72e-17,52;UBERON:0005068,4.72e-17,52;UBERON:0006241,4.72e-17,52;UBERON:0007135,4.72e-17,52;UBERON:0000073,1.09e-16,54;UBERON:0002346,4.04e-15,64;UBERON:0003075,4.04e-15,64;UBERON:0007284,4.04e-15,64;UBERON:0004121,2.88e-14,95;UBERON:0000924,2.88e-14,95;UBERON:0006601,2.88e-14,95;UBERON:0000955,4.98e-14,47;UBERON:0006238,4.98e-14,47;UBERON:0002616,1.09e-13,46;UBERON:0002020,1.27e-11,34;UBERON:0010371,1.45e-11,73;UBERON:0003080,2.12e-11,40;UBERON:0002780,3.59e-11,39;UBERON:0001890,3.59e-11,39;UBERON:0006240,3.59e-11,39;UBERON:0003056,3.52e-10,49;UBERON:0003528,7.75e-09,29;UBERON:0002791,7.75e-09,29;UBERON:0001893,7.75e-09,29;UBERON:0003076,9.16e-07,12;UBERON:0003057,9.16e-07,12 | |||
|phase1_expression=29.4673878672821,18.1467211972468,13.1949779422965,4.23449895829562,6.51164448930251,9.56911849897772,5.84031601488814,4.77756296733832,0.563154888606667,0.70219357896598,1.36974374580404,2.31339261086476,3.59521532855532,4.19617931611188,3.33109761815663,3.64455481301687,8.39474253753776,4.88966356305268,6.58149281307546,2.54633791078818,19.6450000248971,5.56029326724958,7.31359409589019,4.31979541542198,5.50582274561208,14.3557991028755,14.2151458732495,9.69620547086501,6.46079626151671,8.31699428207772,8.42575940490158,4.44521471421742,5.53558308826113,0,5.19932915552294,6.98185510505668,8.77928231928187,20.5080499061085,13.2827008569046,13.6116173433188,9.41170380849623,15.7100461540443,20.8769451803396,7.67970589651021,9.12392380975631,7.52541683862894,26.6013057078333,25.5089432965122,16.9158360705543,18.6652703111312,19.4581126059254,25.8754615856949,6.71130424230945,6.5282592781021,4.36921938885203,9.00408026125814,10.0286703978565,5.67239301505187,20.8385954685386,13.2247744818008,13.9442908771359,17.2810711355257,34.6824970483344,20.2477436388315,1.97773272513395,17.0515227587064,28.4620104992484,45.721978333265,17.3161652555158,14.4456354014909,11.9885227970288,37.9915809257059,30.7007271922743,15.923803897944,20.5109307979026,11.9498442259303,3.30347642998166,18.8977260366078,16.4358990584181,15.4306956644327,29.7334841707831,12.5019208933622,23.451371916116,22.5105044012672,21.5445529365302,19.4454866412621,19.362548588678,18.0807462450542,11.5861075799772,14.81202578093,4.92769630792852,5.16254326188832,0,3.77792234146472,1.29955283489534,2.68816132258401,12.0782201313307,17.2134625803838,11.950156211732,13.0735642568826,19.5772353489586,6.41632387071589,7.64415719119937,7.11066703153331,4.97929394325792,5.32055717497707,2.52762222507392,6.16592950482924,6.47344709117929,6.08612770165782,9.02123699183906,7.00270600117925,8.07154240396205,9.49552635481522,4.58595957829249,6.03199638382442,4.94389935468748,4.48258006451726,6.19227386364912,9.22071044700232,8.39197770149496,5.81850303762267,9.31958806090611,9.07620470735796,13.823482649688,5.62005521458901,4.07371423320129,7.7987355029143,3.43089613097275,10.4853447583376,10.0650132620098,15.8324483662209,9.56033761057521,11.2514801225345,13.0906468072523,11.6813709408785,6.61955865027056,5.97153458928446,3.28539585963777,7.57590681191306,6.11566081924707,12.1848115349741,6.48223667299257,11.0014517020072,6.05524842446818,7.68682321709099,10.8694000489285,5.43277078551933,5.82033580918674,8.69887968771969,7.38994721488585,9.86380795924087,7.50727572909114,7.3132954969655,6.58502836505419,5.7719937377363,7.72434506044558,13.1247432628505,13.3556844715929,9.11353399156208,8.44293815931946,10.8037236876609,12.0739815148457,12.0026181365916,11.8785676923281,10.4640275137684,12.6088498657821,7.58974725386602,11.6837493438571,11.1633875573785,9.40398190731926,12.4269989311532,9.87975518809728,9.66286215074677,9.04246778825747,8.64398743985989,5.94753809370836,2.90895623329899,5.33220626338085,5.34144345279009,5.41243337552792,5.84882221407693,4.89231696458715,8.56015317506516,8.54152310780121,8.39964669092456,8.29406189040889,5.96869416123452,6.62877896205008,6.29173586057955,7.3486936957396,4.58024928485045,12.1387456609972,6.740662243974,7.88954149711563,6.51684249105006,6.59438456369928,5.89140887078676,7.08249215791682,7.38050739898011,4.23896565171712,5.67626954040282,4.15033677922008,6.00642380577939,7.66580080941492,7.19558759631532,6.28866376304359,7.95884627182976,7.38414970166117,6.04161888646702,4.70192157647603,4.3929826110093,1.43768206527355,7.07067800570156,4.05648975048929,2.77836765741823,3.04975602987251,3.37710464954357,6.46636165583116,8.33762211790133,6.35563408123901,5.7713329163564,8.91822943496308,7.70528784232352,8.80761471278251,7.02481132288076,4.25614889086716,5.09368786192182,6.37819074629948,7.20998584749247,8.63424909329478,8.82359257347221,6.03165135757089,3.80733978673097,3.93411418415229,2.48343071674259,11.7201930691088,11.1351102262593,7.37707254195039,9.3414243065618,7.57219726599016,7.02789739733949,7.97066571611356,7.64700153448166,6.68396022247182,5.09537755419898,7.69140333182299,9.35218745316198,5.13874111330481,11.8888887076069,5.53566332312248,10.3278050127008,8.1443479676788,5.60898418106621,2.65490276679926,3.8844901784797,8.76738315197778,4.52652191414155,6.496641643377,4.61152721915891,5.16856586336442,5.08947221268508,4.9909632973861,4.42451461110142,5.27093042874994,3.09406629744561,13.9580238359053,7.92268813737765,10.6074120701859,11.3598628566744,11.5271151867478,11.5939731441346,10.86023535974,8.52501857520878,4.69343416127421,6.35496212591461,3.08739757276947,5.44124634706884,5.00539722757307,5.72972786817481,4.17803204010978,2.79039529566604,5.24665505933731,12.2380699326936,6.4930934703184,8.66824845445534,6.11141940320049,5.46268525313604,6.97140561377228,8.69357058184786,4.58941760983409,5.318155188299,3.17859939750175,3.81868247206045,6.95939185878498,7.31950081656655,5.1842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| |||
|short_description=p1@Pde6d | |||
}} |
Revision as of 03:26, 6 August 2015
Short description: | p1@Pde6d |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Pde6d_5end |
Coexpression cluster: | MCL_coexpression_mm9:1511 |
Association with transcript: | 0bp_to_ENSMUST00000027444, ENSMUST00000146220, ENSMUST00000148683, ENSMUST00000150653, NM_008801, uc007bvq.1, uc011wok.1_5end |
EntrezGene: | 18582 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 1.51e-14 | 44 |
neurectodermal cell | 1.51e-14 | 44 |
neural cell | 5.55e-14 | 43 |
CNS neuron (sensu Vertebrata) | 2.72e-11 | 23 |
neuroblast (sensu Vertebrata) | 2.72e-11 | 23 |
neuron | 9.93e-09 | 33 |
neuronal stem cell | 9.93e-09 | 33 |
neuroblast | 9.93e-09 | 33 |
electrically signaling cell | 9.93e-09 | 33 |
electrically responsive cell | 2.75e-08 | 39 |
electrically active cell | 2.75e-08 | 39 |
embryonic cell | 4.16e-07 | 70 |
migratory neural crest cell | 6.79e-07 | 10 |
neuron associated cell | 6.79e-07 | 10 |
glial cell (sensu Vertebrata) | 6.79e-07 | 10 |
neuron associated cell (sensu Vertebrata) | 6.79e-07 | 10 |
glial cell | 6.79e-07 | 10 |
glioblast | 6.79e-07 | 10 |
glioblast (sensu Vertebrata) | 6.79e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
nervous system | 1.53e-20 | 75 |
central nervous system | 1.13e-19 | 73 |
structure with developmental contribution from neural crest | 1.57e-18 | 92 |
neural tube | 4.72e-17 | 52 |
neural rod | 4.72e-17 | 52 |
future spinal cord | 4.72e-17 | 52 |
neural keel | 4.72e-17 | 52 |
regional part of nervous system | 1.09e-16 | 54 |
neurectoderm | 4.04e-15 | 64 |
neural plate | 4.04e-15 | 64 |
presumptive neural plate | 4.04e-15 | 64 |
ectoderm-derived structure | 2.88e-14 | 95 |
ectoderm | 2.88e-14 | 95 |
presumptive ectoderm | 2.88e-14 | 95 |
brain | 4.98e-14 | 47 |
future brain | 4.98e-14 | 47 |
regional part of brain | 1.09e-13 | 46 |
gray matter | 1.27e-11 | 34 |
ecto-epithelium | 1.45e-11 | 73 |
anterior neural tube | 2.12e-11 | 40 |
regional part of forebrain | 3.59e-11 | 39 |
forebrain | 3.59e-11 | 39 |
future forebrain | 3.59e-11 | 39 |
pre-chordal neural plate | 3.52e-10 | 49 |
brain grey matter | 7.75e-09 | 29 |
regional part of telencephalon | 7.75e-09 | 29 |
telencephalon | 7.75e-09 | 29 |
posterior neural tube | 9.16e-07 | 12 |
chordal neural plate | 9.16e-07 | 12 |