FFCP PHASE1:Mm9::chr8:23763866..23763877,-: Difference between revisions
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{{FFCP|EntrezGene=18970|HGNC=|MCL_coexpression_id=376|UniProt=Q8K409|association_with_transcript=31bp_to_ENSMUST00000033938,NM_011130,uc009ldk.2_5end|description=CAGE_peak_2_at_Polb_5end|id=chr8:23763866..23763877,-|ontology_enrichment_celltype=CL:0000117!1.47e-12!23;CL:0000337!1.47e-12!23;CL:0000540!1.18e-09!33;CL:0000047!1.18e-09!33;CL:0000031!1.18e-09!33;CL:0000404!1.18e-09!33|ontology_enrichment_celltype_v019_2=CL:0000117,1.24e-13,23;CL:0000337,1.24e-13,23;CL:0000540,4.07e-10,33;CL:0000047,4.07e-10,33;CL:0000031,4.07e-10,33;CL:0000404,4.07e-10,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000033!9.83e-19!63;UBERON:0004121!6.85e-18!102;UBERON:0000924!6.85e-18!102;UBERON:0006601!6.85e-18!102;UBERON:0000153!9.81e-18!94;UBERON:0007811!2.31e-16!86;UBERON:0003056!1.68e-15!49;UBERON:0002020!1.97e-15!34;UBERON:0001049!3.38e-15!52;UBERON:0005068!3.38e-15!52;UBERON:0006241!3.38e-15!52;UBERON:0007135!3.38e-15!52;UBERON:0002346!2.34e-14!71;UBERON:0003075!2.34e-14!71;UBERON:0007284!2.34e-14!71;UBERON:0001017!6.31e-14!73;UBERON:0005743!6.31e-14!73;UBERON:0000955!1.09e-13!50;UBERON:0006238!1.09e-13!50;UBERON:0002616!2.57e-13!49;UBERON:0000073!1.04e-12!75;UBERON:0001016!1.04e-12!75;UBERON:0002791!1.74e-12!29;UBERON:0003528!1.74e-12!29;UBERON:0001893!1.74e-12!29;UBERON:0003080!1.76e-12!40;UBERON:0002780!2.92e-12!39;UBERON:0001890!2.92e-12!39;UBERON:0006240!2.92e-12!39;UBERON:0000956!9.04e-09!21;UBERON:0001869!9.04e-09!21;UBERON:0000203!9.04e-09!21;UBERON:0000475!9.90e-07!200|ontology_enrichment_uberon_v019_2=UBERON:0010371,3.81e-23,73;UBERON:0004121,3.43e-22,95;UBERON:0000924,3.43e-22,95;UBERON:0006601,3.43e-22,95;UBERON:0002346,2.78e-18,64;UBERON:0003075,2.78e-18,64;UBERON:0007284,2.78e-18,64;UBERON:0000073,1.59e-17,54;UBERON:0001049,1.79e-16,52;UBERON:0005068,1.79e-16,52;UBERON:0006241,1.79e-16,52;UBERON:0007135,1.79e-16,52;UBERON:0003056,2.47e-16,49;UBERON:0002020,3.21e-16,34;UBERON:0001017,1.94e-15,73;UBERON:0001016,2.71e-14,75;UBERON:0000955,2.14e-13,47;UBERON:0006238,2.14e-13,47;UBERON:0003080,4.92e-13,40;UBERON:0003528,5.16e-13,29;UBERON:0002791,5.16e-13,29;UBERON:0001893,5.16e-13,29;UBERON:0002616,5.36e-13,46;UBERON:0002780,8.58e-13,39;UBERON:0001890,8.58e-13,39;UBERON:0006240,8.58e-13,39;UBERON:0010314,2.11e-10,92;UBERON:0000956,5.77e-09,21;UBERON:0001869,5.77e-09,21;UBERON:0000203,5.77e-09,21|phase1_expression=3.84357233051505,1.74487703819681,2.72999543633722,0.90739263392049,0,2.18243053485457,0.700837921786577,1.03298658753261,1.68946466582,1.87251621057595,1.36974374580404,1.7549874978974,1.54080656938085,1.66098764596095,0.666219523631325,0.404950534779652,0,0.946386496074713,2.05671650408608,1.69755860719212,4.59233766815777,1.39007331681239,0.522399578277871,0.799962113967033,0.91763712426868,1.72269589234506,0.86152399231815,0.861884930743556,0,0.504060259519861,0.886922042621219,0.635030673459631,0,0,0.577703239502549,0,0.408338712524738,2.51118978442145,0,1.57057123192139,1.17646297606203,0,2.42755176515577,0.377690453926732,0.405507724878058,0.367093504323363,0,0.436050312760893,0.659058548203415,0.972149495371417,0.55994568650145,0,1.51004345451963,0.725362142011344,1.68046899571232,0,0.286533439938757,0.515672092277442,5.86717736492834,3.1739458756322,3.80298842103708,0,1.77858959222228,0,0,0,0.299600110518405,0.384218305321555,3.7328260431052,4.45519596494579,3.99617426567626,4.57041575046086,2.65042249141936,5.63457676388789,3.25874601462004,1.83843757322004,2.20231761998777,3.44755812830007,3.37934373163736,7.25374582516066,3.65950574409639,7.29278718779464,1.3959149950069,2.8138130501584,3.20876320331301,4.71405736757868,4.8406371471695,7.26957838718672,0.530083353332288,0.302286240427142,0.579728977403356,1.72084775396277,0,1.61910957491345,2.59910566979068,0.896053774194671,1.12355536105401,0.340860645156116,0,0,2.95771181531029,1.28326477414318,0,0,0.865964164044856,0.760079596425296,1.01104889002957,2.2836775943812,2.33044095282455,0.890652834388949,1.21439728736295,0.304465478312141,0.691846491768175,1.05505848386836,1.29347577849275,0.753999547978053,0.741584903203122,0.578397427679647,0,0.323533699894818,1.76673214768315,0.484875253135222,0,1.75668478206928,3.35114730901528,1.02182822083437,0.599075622529601,1.19980546198682,1.01656181658452,1.9472783122627,3.20250421973039,7.79056983099759,3.82413504423008,3.58001640262463,1.0389402227978,2.75810147215188,1.12023300235348,1.24406970610093,4.80173241023982,5.89237196482127,1.56144531555244,1.60931473103431,2.16074555766419,3.31550599238573,2.4493139694478,3.07472928683639,1.87403449119458,3.88055056108524,1.94011193639558,1.70195472151037,1.58356011747554,0.657587197282725,1.94633074457919,2.089512999133,2.46938563689532,0.995171334092466,0,0,0.852490498186778,1.03562886267751,0.938104239924385,0.900310307305074,0.473489471170421,0.393528463494808,1.23413690309903,0.930135779001631,2.41446061259657,0.934122738937356,1.31647879930784,0.985004784474571,1.13496333364198,0.73099993712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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:18970 | |||
|HGNC= | |||
|MCL_coexpression_id=376 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q8K409 | |||
|association_with_transcript=31bp_to_ENSMUST00000033938,NM_011130,uc009ldk.2_5end | |||
|cluster_id=chr8:23763866..23763877,- | |||
|description=CAGE_peak_2_at_Polb_5end | |||
|id=chr8:23763866..23763877,- | |||
|ontology_enrichment_celltype=CL:0000117!1.47e-12!23;CL:0000337!1.47e-12!23;CL:0000540!1.18e-09!33;CL:0000047!1.18e-09!33;CL:0000031!1.18e-09!33;CL:0000404!1.18e-09!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.24e-13,23;CL:0000337,1.24e-13,23;CL:0000540,4.07e-10,33;CL:0000047,4.07e-10,33;CL:0000031,4.07e-10,33;CL:0000404,4.07e-10,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000033!9.83e-19!63;UBERON:0004121!6.85e-18!102;UBERON:0000924!6.85e-18!102;UBERON:0006601!6.85e-18!102;UBERON:0000153!9.81e-18!94;UBERON:0007811!2.31e-16!86;UBERON:0003056!1.68e-15!49;UBERON:0002020!1.97e-15!34;UBERON:0001049!3.38e-15!52;UBERON:0005068!3.38e-15!52;UBERON:0006241!3.38e-15!52;UBERON:0007135!3.38e-15!52;UBERON:0002346!2.34e-14!71;UBERON:0003075!2.34e-14!71;UBERON:0007284!2.34e-14!71;UBERON:0001017!6.31e-14!73;UBERON:0005743!6.31e-14!73;UBERON:0000955!1.09e-13!50;UBERON:0006238!1.09e-13!50;UBERON:0002616!2.57e-13!49;UBERON:0000073!1.04e-12!75;UBERON:0001016!1.04e-12!75;UBERON:0002791!1.74e-12!29;UBERON:0003528!1.74e-12!29;UBERON:0001893!1.74e-12!29;UBERON:0003080!1.76e-12!40;UBERON:0002780!2.92e-12!39;UBERON:0001890!2.92e-12!39;UBERON:0006240!2.92e-12!39;UBERON:0000956!9.04e-09!21;UBERON:0001869!9.04e-09!21;UBERON:0000203!9.04e-09!21;UBERON:0000475!9.90e-07!200 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0010371,3.81e-23,73;UBERON:0004121,3.43e-22,95;UBERON:0000924,3.43e-22,95;UBERON:0006601,3.43e-22,95;UBERON:0002346,2.78e-18,64;UBERON:0003075,2.78e-18,64;UBERON:0007284,2.78e-18,64;UBERON:0000073,1.59e-17,54;UBERON:0001049,1.79e-16,52;UBERON:0005068,1.79e-16,52;UBERON:0006241,1.79e-16,52;UBERON:0007135,1.79e-16,52;UBERON:0003056,2.47e-16,49;UBERON:0002020,3.21e-16,34;UBERON:0001017,1.94e-15,73;UBERON:0001016,2.71e-14,75;UBERON:0000955,2.14e-13,47;UBERON:0006238,2.14e-13,47;UBERON:0003080,4.92e-13,40;UBERON:0003528,5.16e-13,29;UBERON:0002791,5.16e-13,29;UBERON:0001893,5.16e-13,29;UBERON:0002616,5.36e-13,46;UBERON:0002780,8.58e-13,39;UBERON:0001890,8.58e-13,39;UBERON:0006240,8.58e-13,39;UBERON:0010314,2.11e-10,92;UBERON:0000956,5.77e-09,21;UBERON:0001869,5.77e-09,21;UBERON:0000203,5.77e-09,21 | |||
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| |||
|short_description=p2@Polb | |||
}} |
Revision as of 06:24, 6 August 2015
Short description: | p2@Polb |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Polb_5end |
Coexpression cluster: | MCL_coexpression_mm9:376 |
Association with transcript: | 31bp_to_ENSMUST00000033938, NM_011130, uc009ldk.2_5end |
EntrezGene: | 18970 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.24e-13 | 23 |
neuroblast (sensu Vertebrata) | 1.24e-13 | 23 |
neuron | 4.07e-10 | 33 |
neuronal stem cell | 4.07e-10 | 33 |
neuroblast | 4.07e-10 | 33 |
electrically signaling cell | 4.07e-10 | 33 |
Ontology term | p-value | n |
---|---|---|
ecto-epithelium | 3.81e-23 | 73 |
ectoderm-derived structure | 3.43e-22 | 95 |
ectoderm | 3.43e-22 | 95 |
presumptive ectoderm | 3.43e-22 | 95 |
neurectoderm | 2.78e-18 | 64 |
neural plate | 2.78e-18 | 64 |
presumptive neural plate | 2.78e-18 | 64 |
regional part of nervous system | 1.59e-17 | 54 |
neural tube | 1.79e-16 | 52 |
neural rod | 1.79e-16 | 52 |
future spinal cord | 1.79e-16 | 52 |
neural keel | 1.79e-16 | 52 |
pre-chordal neural plate | 2.47e-16 | 49 |
gray matter | 3.21e-16 | 34 |
central nervous system | 1.94e-15 | 73 |
nervous system | 2.71e-14 | 75 |
brain | 2.14e-13 | 47 |
future brain | 2.14e-13 | 47 |
anterior neural tube | 4.92e-13 | 40 |
brain grey matter | 5.16e-13 | 29 |
regional part of telencephalon | 5.16e-13 | 29 |
telencephalon | 5.16e-13 | 29 |
regional part of brain | 5.36e-13 | 46 |
regional part of forebrain | 8.58e-13 | 39 |
forebrain | 8.58e-13 | 39 |
future forebrain | 8.58e-13 | 39 |
structure with developmental contribution from neural crest | 2.11e-10 | 92 |
cerebral cortex | 5.77e-09 | 21 |
cerebral hemisphere | 5.77e-09 | 21 |
pallium | 5.77e-09 | 21 |