FFCP PHASE2:Hg19::chr19:42387240..42387310,+: Difference between revisions
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(Created page with "{{FFCP |DHSsupport=supported |DPIdataset=robust |EntrezGene=entrezgene:9138 |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding |HGNC=HGNC:681 |TSSclassi...") |
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|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene=9138 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC= | |HGNC=681 | ||
|TSSclassifier=strong | |TSSclassifier=strong | ||
|UniProt= | |UniProt=Q92888 | ||
|association_with_transcript=0bp_to_ENST00000316079,ENST00000347545,ENST00000354532,NM_004706,NM_198977,uc002orw.1,uc002orx.2,uc002ory.2,uc002orz.2_5end | |association_with_transcript=0bp_to_ENST00000316079,ENST00000347545,ENST00000354532,NM_004706,NM_198977,uc002orw.1,uc002orx.2,uc002ory.2,uc002orz.2_5end | ||
|cluster_id=chr19:42387240..42387310,+ | |cluster_id=chr19:42387240..42387310,+ | ||
Latest revision as of 06:59, 18 September 2015
| Short description: | p1@ARHGEF1 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_1_at_ARHGEF1_5end |
| Coexpression cluster: | C57_Neutrophils_Eosinophils_Whole_CD4_CD8_CD19_Natural |
| Association with transcript: | 0bp_to_ENST00000316079, ENST00000347545, ENST00000354532, NM_004706, NM_198977, uc002orw.1, uc002orx.2, uc002ory.2, uc002orz.2_5end |
| EntrezGene: | ARHGEF1 |
| HGNC: | 681 |
| UniProt: | Q92888 |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p1@ARHGEF1 |
|---|
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- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| hematopoietic stem cell | 5.58e-53 | 168 |
| hematopoietic cell | 1.41e-52 | 177 |
| leukocyte | 1.64e-49 | 136 |
| hematopoietic oligopotent progenitor cell | 3.73e-49 | 161 |
| hematopoietic multipotent progenitor cell | 3.73e-49 | 161 |
| nongranular leukocyte | 1.81e-42 | 115 |
| hematopoietic lineage restricted progenitor cell | 2.87e-39 | 120 |
| myeloid cell | 7.91e-28 | 108 |
| common myeloid progenitor | 7.91e-28 | 108 |
| myeloid leukocyte | 1.92e-25 | 72 |
Showing 1 to 10 of 38 entries
| Ontology term | p-value | n |
|---|---|---|
| hematopoietic system | 3.24e-29 | 98 |
| blood island | 3.24e-29 | 98 |
| hemolymphoid system | 2.42e-28 | 108 |
| immune system | 9.01e-22 | 93 |
| lateral plate mesoderm | 1.30e-20 | 203 |
| bone marrow | 1.84e-20 | 76 |
| bone element | 3.03e-18 | 82 |
| connective tissue | 2.38e-15 | 371 |
| skeletal element | 3.55e-15 | 90 |
| skeletal system | 1.35e-12 | 100 |
Showing 1 to 10 of 13 entries
| Ontology term | p-value | n |
|---|---|---|
| hematologic cancer | 5.18e-07 | 51 |
| immune system cancer | 5.18e-07 | 51 |
| leukemia | 8.21e-07 | 39 |
Showing 1 to 3 of 3 entries
