FFCP PHASE2:Hg19::chr4:103266043..103266060,-: Difference between revisions
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(Created page with "{{FFCP |DHSsupport=supported |DPIdataset=robust |EntrezGene=entrezgene:64116 |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding |HGNC=HGNC:20862 |TSScla...") |
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|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene=64116 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC= | |HGNC=20862 | ||
|TSSclassifier=strong | |TSSclassifier=strong | ||
|UniProt= | |UniProt=Q9C0K1 | ||
|association_with_transcript=235bp_to_ENST00000394833_5end | |association_with_transcript=235bp_to_ENST00000394833_5end | ||
|cluster_id=chr4:103266043..103266060,- | |cluster_id=chr4:103266043..103266060,- | ||
Latest revision as of 03:37, 20 September 2015
| Short description: | p12@SLC39A8 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_12_at_SLC39A8_5end |
| Coexpression cluster: | C137_large_ductal_melanoma_cervical_Endothelial_Smooth_chronic |
| Association with transcript: | 235bp_to_ENST00000394833_5end |
| EntrezGene: | SLC39A8 |
| HGNC: | 20862 |
| UniProt: | Q9C0K1 |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p12@SLC39A8 |
|---|
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- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| erythroid lineage cell | 9.14e-14 | 2 |
| erythroblast | 9.14e-14 | 2 |
| megakaryocyte-erythroid progenitor cell | 9.14e-14 | 2 |
| erythroid progenitor cell | 9.14e-14 | 2 |
| reticulocyte | 9.14e-14 | 2 |
| proerythroblast | 9.14e-14 | 2 |
| basophilic erythroblast | 9.14e-14 | 2 |
| polychromatophilic erythroblast | 9.14e-14 | 2 |
| orthochromatic erythroblast | 9.14e-14 | 2 |
| myeloid cell | 9.26e-13 | 108 |
Showing 1 to 10 of 15 entries
| Ontology term | p-value | n |
|---|---|---|
| intralobular bile duct | 1.83e-07 | 1 |
| acinus | 1.83e-07 | 1 |
| intrahepatic bile duct | 1.83e-07 | 1 |
| portal lobule | 1.83e-07 | 1 |
| hepatic acinus | 1.83e-07 | 1 |
| left cardiac atrium | 1.95e-07 | 1 |
| lower lobe of right lung | 2.83e-07 | 1 |
| right lung lobe | 2.83e-07 | 1 |
| lower lobe of lung | 2.83e-07 | 1 |
| lobe of lung | 2.83e-07 | 1 |
Showing 1 to 10 of 18 entries
| Ontology term | p-value | n |
|---|---|---|
| chronic leukemia | 5.15e-36 | 8 |
| myeloid leukemia | 4.84e-18 | 31 |
| leukemia | 7.24e-17 | 39 |
| hematologic cancer | 2.02e-12 | 51 |
| immune system cancer | 2.02e-12 | 51 |
| chronic myeloid leukemia | 7.50e-08 | 1 |
| osteosarcoma | 2.07e-07 | 1 |
Showing 1 to 7 of 7 entries
