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{{f5samples
{{f5samples
|id=FF:10824-111C5
|F5samples=
|name=chronic myelogenous leukemia cell line:K562 ENCODE, biol_rep1
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000465,UBERON:0000479,UBERON:0001062,UBERON:0002384
|sample_id=10824
|rna_tube_id=111C5
|rna_box=111
|rna_position=C5
|sample_cell_lot=
|sample_cell_catalog=
|sample_company=
|rna_lot_number=
|rna_catalog_number=
|sample_species=
|sample_strain=
|sample_dev_stage=
|sample_tissue=blood
|sample_donor(cell lot)=
|sample_sex=female
|sample_age=53
|sample_ethnicity=unknown
|rna_rin=
|rna_od260/230=2.15
|rna_od260/280=2.08
|sample_cell_type=granulocyte
|sample_cell_line=K562
|sample_collaboration=Carrie Davis (Cold spring Harbor Laboratories)
|sample_experimental_condition=
|sample_disease=
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_weight_ug=53.5624
|rna_concentration=1.33906
|sample_note=
|profile_hcage=CNhs12334,LSID913,release011,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000037,CL:0000048,CL:0000049,CL:0000063,CL:0000134,CL:0000144,CL:0000219,CL:0000255,CL:0000548,CL:0000566,CL:0000723,CL:0000763,CL:0000837,CL:0000988,CL:0002032,CL:0002320,CL:0002371
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000037,CL:0000048,CL:0000049,CL:0000063,CL:0000134,CL:0000144,CL:0000219,CL:0000255,CL:0000548,CL:0000566,CL:0000723,CL:0000763,CL:0000837,CL:0000988,CL:0002032,CL:0002320,CL:0002371
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000465,UBERON:0000479,UBERON:0001062,UBERON:0002384
|ancestors_in_disease_facet=DOID:0050686,DOID:0060083,DOID:1036,DOID:1240,DOID:14566,DOID:162,DOID:2531,DOID:4,DOID:8692
|ancestors_in_disease_facet=DOID:0050686,DOID:0060083,DOID:1036,DOID:1240,DOID:14566,DOID:162,DOID:2531,DOID:4,DOID:8692
|sample_description=
|comment=
|created_by=
|creation_date=
|def=
|fonse_cell_line=FF:0101035
|fonse_cell_line=FF:0101035
|fonse_cell_line_closure=FF:0101035
|fonse_cell_line_closure=FF:0101035
Line 66: Line 34:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|top_motifs=GATA6:3.53652371598;MYB:1.91453892144;POU3F1..4:1.74755117282;ELK1,4_GABP{A,B1}:1.72376020444;CDX1,2,4:1.61974095594;NFY{A,B,C}:1.56042023151;E2F1..5:1.4613624517;STAT5{A,B}:1.44117801259;PBX1:1.4091373062;NRF1:1.25442316536;ZBTB16:1.18957979687;HOXA9_MEIS1:1.15130310269;POU2F1..3:1.14372193455;NR5A1,2:1.0262560085;STAT1,3:1.00035840005;ZNF143:0.918492872862;NR6A1:0.915796800515;HOX{A5,B5}:0.901471019923;FOXQ1:0.874705666783;HOX{A6,A7,B6,B7}:0.855276492784;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.846138406838;NFIX:0.836956871802;CRX:0.816736798038;PITX1..3:0.805969084698;PAX8:0.788546778225;ADNP_IRX_SIX_ZHX:0.786311170949;AHR_ARNT_ARNT2:0.716351500623;OCT4_SOX2{dimer}:0.707103880869;NANOG:0.669331052;YY1:0.617680934879;RBPJ:0.579791663222;ESRRA:0.541530273508;BREu{core}:0.497944589027;T:0.485893145073;NKX3-2:0.456607763512;CUX2:0.443546067981;HES1:0.414793747667;ZNF148:0.41384592722;FOXA2:0.41160909819;NFE2:0.388525085442;NR1H4:0.385966247776;SOX{8,9,10}:0.384563857161;AIRE:0.372728766528;NANOG{mouse}:0.367608422409;RORA:0.362137261442;NKX2-3_NKX2-5:0.351385642758;SPZ1:0.344179341813;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.340118193078;GFI1:0.322626901166;AR:0.307809098904;PAX3,7:0.296561083044;PRRX1,2:0.293723737318;ALX1:0.2642898499;ELF1,2,4:0.2497139854;IKZF2:0.213600292967;SMAD1..7,9:0.179046378986;NKX2-1,4:0.167779797709;HAND1,2:0.165403829907;ONECUT1,2:0.152498540007;POU1F1:0.140013642674;IKZF1:0.134282705257;HSF1,2:0.132213264071;SNAI1..3:0.129680400804;ARID5B:0.118578008891;TEF:0.109692424927;EVI1:0.0869621937093;HOX{A4,D4}:0.0816463196069;HNF4A_NR2F1,2:0.0802512869104;TOPORS:0.0770596300312;LEF1_TCF7_TCF7L1,2:0.0732310493206;RXRA_VDR{dimer}:0.0705047382963;ZEB1:0.0132699284635;PAX6:0.0113276529421;bHLH_family:-0.0034353740966;PPARG:-0.0215664296553;ZNF384:-0.03978882248;VSX1,2:-0.0614903122551;NKX6-1,2:-0.0660615309187;FOX{F1,F2,J1}:-0.0769345728588;SPIB:-0.105306256265;FOXD3:-0.106544723405;EN1,2:-0.117498650651;POU6F1:-0.133630576047;POU5F1:-0.136271548282;TFDP1:-0.174612591934;MYOD1:-0.176784669786;CREB1:-0.190344383996;ATF5_CREB3:-0.193153360559;HIF1A:-0.198030564407;NFE2L2:-0.201054212393;FOSL2:-0.202713192239;HLF:-0.219334957506;HNF1A:-0.220464085939;NKX2-2,8:-0.245034315149;FOXP1:-0.245318219548;MEF2{A,B,C,D}:-0.255315644372;ATF4:-0.264841872441;PAX1,9:-0.274641912115;SPI1:-0.279628156928;PAX2:-0.314186554547;MAFB:-0.339616255434;RUNX1..3:-0.367677767482;SP1:-0.367976939418;CEBPA,B_DDIT3:-0.386004883892;BACH2:-0.387821993281;FOXN1:-0.392424869475;KLF4:-0.400445578736;NKX3-1:-0.405535948008;UFEwm:-0.405720379578;NFKB1_REL_RELA:-0.425646127706;RFX2..5_RFXANK_RFXAP:-0.42691972242;FOS_FOS{B,L1}_JUN{B,D}:-0.427966165565;TGIF1:-0.461661223574;ZFP161:-0.46625398179;LMO2:-0.472660428975;STAT2,4,6:-0.472968873674;RXR{A,B,G}:-0.477064623425;ETS1,2:-0.497119908965;RFX1:-0.497304497589;GATA4:-0.499727008144;PAX4:-0.5254973553;HBP1_HMGB_SSRP1_UBTF:-0.52907634838;SOX17:-0.55306495804;SOX5:-0.599823165534;REST:-0.606422246064;NFE2L1:-0.615308814858;ZBTB6:-0.637096372405;FOXP3:-0.644579721886;PDX1:-0.685507459405;ZNF238:-0.693993412417;DMAP1_NCOR{1,2}_SMARC:-0.705450540549;NFATC1..3:-0.705505651969;XBP1:-0.708478957196;FOXM1:-0.710244465432;ZIC1..3:-0.724887335483;FOX{I1,J2}:-0.731193697884;ATF2:-0.764470000169;LHX3,4:-0.766375113058;EP300:-0.767645521879;GTF2I:-0.774457308604;ALX4:-0.780244335511;TLX2:-0.782544378655;PATZ1:-0.78361439432;TP53:-0.784820861467;XCPE1{core}:-0.793935450872;RREB1:-0.806558187381;NFIL3:-0.816496928995;IRF7:-0.8201098061;SOX2:-0.820353220335;NHLH1,2:-0.838919133768;TBP:-0.876676666274;DBP:-0.888691669816;EGR1..3:-0.892953561855;SREBF1,2:-0.89426419778;CDC5L:-0.908700143685;GTF2A1,2:-0.931508775393;MZF1:-0.936737286754;JUN:-0.948468380312;TFAP4:-0.951965080433;MED-1{core}:-0.976922786441;TEAD1:-0.993901662705;MYBL2:-1.01467153037;NR3C1:-1.01840907584;FOX{D1,D2}:-1.06897499777;IRF1,2:-1.07555106019;GCM1,2:-1.09826223529;HMGA1,2:-1.11407798163;BPTF:-1.12292427363;SRF:-1.12435475988;MYFfamily:-1.14102252043;ESR1:-1.16566651518;HMX1:-1.19475239375;EBF1:-1.21679555089;ZNF423:-1.23323316816;HIC1:-1.26138132456;TLX1..3_NFIC{dimer}:-1.27587505892;ATF6:-1.30420371393;GLI1..3:-1.30458862737;MAZ:-1.31920053115;FOXO1,3,4:-1.34189782984;PRDM1:-1.34996943757;PAX5:-1.36593577834;TAL1_TCF{3,4,12}:-1.36821160858;MTF1:-1.39898631688;TBX4,5:-1.47215758332;MTE{core}:-1.48960064267;GFI1B:-1.53835839663;GZF1:-1.55389893194;TFAP2{A,C}:-1.64978376585;TFAP2B:-1.73834296513;FOXL1:-1.94267775347;TFCP2:-2.30759003768
|comment=
|created_by=
|creation_date=
|def=
|has_quality=
|has_quality=
|id=FF:10824-111C5
|is_a=EFO:0002091;;FF:0000003;;FF:0000210;;FF:0100664
|is_a=EFO:0002091;;FF:0000003;;FF:0000210;;FF:0100664
|name=chronic myelogenous leukemia cell line:K562 ENCODE, biol_rep1
|namespace=FANTOM5
|namespace=FANTOM5
|part_of=
|part_of=
|profile_cagescan=,,,
|profile_hcage=CNhs12334,LSID913,release011,COMPLETED
|profile_rnaseq=,,,
|profile_srnaseq=,,,
|rna_box=111
|rna_catalog_number=
|rna_concentration=1.33906
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_lot_number=
|rna_od260/230=2.15
|rna_od260/280=2.08
|rna_position=C5
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=111C5
|rna_weight_ug=53.5624
|sample_age=53
|sample_cell_catalog=
|sample_cell_line=K562
|sample_cell_lot=
|sample_cell_type=granulocyte
|sample_collaboration=Carrie Davis (Cold spring Harbor Laboratories)
|sample_company=
|sample_description=
|sample_dev_stage=
|sample_disease=
|sample_donor(cell lot)=
|sample_ethnicity=unknown
|sample_experimental_condition=
|sample_id=10824
|sample_note=
|sample_sex=female
|sample_species=
|sample_strain=
|sample_tissue=blood
|top_motifs=GATA6:3.53652371598;MYB:1.91453892144;POU3F1..4:1.74755117282;ELK1,4_GABP{A,B1}:1.72376020444;CDX1,2,4:1.61974095594;NFY{A,B,C}:1.56042023151;E2F1..5:1.4613624517;STAT5{A,B}:1.44117801259;PBX1:1.4091373062;NRF1:1.25442316536;ZBTB16:1.18957979687;HOXA9_MEIS1:1.15130310269;POU2F1..3:1.14372193455;NR5A1,2:1.0262560085;STAT1,3:1.00035840005;ZNF143:0.918492872862;NR6A1:0.915796800515;HOX{A5,B5}:0.901471019923;FOXQ1:0.874705666783;HOX{A6,A7,B6,B7}:0.855276492784;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.846138406838;NFIX:0.836956871802;CRX:0.816736798038;PITX1..3:0.805969084698;PAX8:0.788546778225;ADNP_IRX_SIX_ZHX:0.786311170949;AHR_ARNT_ARNT2:0.716351500623;OCT4_SOX2{dimer}:0.707103880869;NANOG:0.669331052;YY1:0.617680934879;RBPJ:0.579791663222;ESRRA:0.541530273508;BREu{core}:0.497944589027;T:0.485893145073;NKX3-2:0.456607763512;CUX2:0.443546067981;HES1:0.414793747667;ZNF148:0.41384592722;FOXA2:0.41160909819;NFE2:0.388525085442;NR1H4:0.385966247776;SOX{8,9,10}:0.384563857161;AIRE:0.372728766528;NANOG{mouse}:0.367608422409;RORA:0.362137261442;NKX2-3_NKX2-5:0.351385642758;SPZ1:0.344179341813;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.340118193078;GFI1:0.322626901166;AR:0.307809098904;PAX3,7:0.296561083044;PRRX1,2:0.293723737318;ALX1:0.2642898499;ELF1,2,4:0.2497139854;IKZF2:0.213600292967;SMAD1..7,9:0.179046378986;NKX2-1,4:0.167779797709;HAND1,2:0.165403829907;ONECUT1,2:0.152498540007;POU1F1:0.140013642674;IKZF1:0.134282705257;HSF1,2:0.132213264071;SNAI1..3:0.129680400804;ARID5B:0.118578008891;TEF:0.109692424927;EVI1:0.0869621937093;HOX{A4,D4}:0.0816463196069;HNF4A_NR2F1,2:0.0802512869104;TOPORS:0.0770596300312;LEF1_TCF7_TCF7L1,2:0.0732310493206;RXRA_VDR{dimer}:0.0705047382963;ZEB1:0.0132699284635;PAX6:0.0113276529421;bHLH_family:-0.0034353740966;PPARG:-0.0215664296553;ZNF384:-0.03978882248;VSX1,2:-0.0614903122551;NKX6-1,2:-0.0660615309187;FOX{F1,F2,J1}:-0.0769345728588;SPIB:-0.105306256265;FOXD3:-0.106544723405;EN1,2:-0.117498650651;POU6F1:-0.133630576047;POU5F1:-0.136271548282;TFDP1:-0.174612591934;MYOD1:-0.176784669786;CREB1:-0.190344383996;ATF5_CREB3:-0.193153360559;HIF1A:-0.198030564407;NFE2L2:-0.201054212393;FOSL2:-0.202713192239;HLF:-0.219334957506;HNF1A:-0.220464085939;NKX2-2,8:-0.245034315149;FOXP1:-0.245318219548;MEF2{A,B,C,D}:-0.255315644372;ATF4:-0.264841872441;PAX1,9:-0.274641912115;SPI1:-0.279628156928;PAX2:-0.314186554547;MAFB:-0.339616255434;RUNX1..3:-0.367677767482;SP1:-0.367976939418;CEBPA,B_DDIT3:-0.386004883892;BACH2:-0.387821993281;FOXN1:-0.392424869475;KLF4:-0.400445578736;NKX3-1:-0.405535948008;UFEwm:-0.405720379578;NFKB1_REL_RELA:-0.425646127706;RFX2..5_RFXANK_RFXAP:-0.42691972242;FOS_FOS{B,L1}_JUN{B,D}:-0.427966165565;TGIF1:-0.461661223574;ZFP161:-0.46625398179;LMO2:-0.472660428975;STAT2,4,6:-0.472968873674;RXR{A,B,G}:-0.477064623425;ETS1,2:-0.497119908965;RFX1:-0.497304497589;GATA4:-0.499727008144;PAX4:-0.5254973553;HBP1_HMGB_SSRP1_UBTF:-0.52907634838;SOX17:-0.55306495804;SOX5:-0.599823165534;REST:-0.606422246064;NFE2L1:-0.615308814858;ZBTB6:-0.637096372405;FOXP3:-0.644579721886;PDX1:-0.685507459405;ZNF238:-0.693993412417;DMAP1_NCOR{1,2}_SMARC:-0.705450540549;NFATC1..3:-0.705505651969;XBP1:-0.708478957196;FOXM1:-0.710244465432;ZIC1..3:-0.724887335483;FOX{I1,J2}:-0.731193697884;ATF2:-0.764470000169;LHX3,4:-0.766375113058;EP300:-0.767645521879;GTF2I:-0.774457308604;ALX4:-0.780244335511;TLX2:-0.782544378655;PATZ1:-0.78361439432;TP53:-0.784820861467;XCPE1{core}:-0.793935450872;RREB1:-0.806558187381;NFIL3:-0.816496928995;IRF7:-0.8201098061;SOX2:-0.820353220335;NHLH1,2:-0.838919133768;TBP:-0.876676666274;DBP:-0.888691669816;EGR1..3:-0.892953561855;SREBF1,2:-0.89426419778;CDC5L:-0.908700143685;GTF2A1,2:-0.931508775393;MZF1:-0.936737286754;JUN:-0.948468380312;TFAP4:-0.951965080433;MED-1{core}:-0.976922786441;TEAD1:-0.993901662705;MYBL2:-1.01467153037;NR3C1:-1.01840907584;FOX{D1,D2}:-1.06897499777;IRF1,2:-1.07555106019;GCM1,2:-1.09826223529;HMGA1,2:-1.11407798163;BPTF:-1.12292427363;SRF:-1.12435475988;MYFfamily:-1.14102252043;ESR1:-1.16566651518;HMX1:-1.19475239375;EBF1:-1.21679555089;ZNF423:-1.23323316816;HIC1:-1.26138132456;TLX1..3_NFIC{dimer}:-1.27587505892;ATF6:-1.30420371393;GLI1..3:-1.30458862737;MAZ:-1.31920053115;FOXO1,3,4:-1.34189782984;PRDM1:-1.34996943757;PAX5:-1.36593577834;TAL1_TCF{3,4,12}:-1.36821160858;MTF1:-1.39898631688;TBX4,5:-1.47215758332;MTE{core}:-1.48960064267;GFI1B:-1.53835839663;GZF1:-1.55389893194;TFAP2{A,C}:-1.64978376585;TFAP2B:-1.73834296513;FOXL1:-1.94267775347;TFCP2:-2.30759003768
}}
}}

Revision as of 14:16, 21 March 2012


Name:chronic myelogenous leukemia cell line:K562 ENCODE, biol_rep1
Species:
Library ID:{{{library_id}}}
Sample type:{{{sample_category}}}
Additional information
Sample information
strainNA
tissueblood
dev stageNA
sexfemale
age53
cell typegranulocyte
cell lineK562
companyNA
collaborationCarrie Davis (Cold spring Harbor Laboratories)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0



FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000034 (stem cell)
0000037 (hematopoietic stem cell)
0000048 (multi fate stem cell)
0000049 (common myeloid progenitor)
0000134 (mesenchymal cell)
0000219 (motile cell)
0000255 (eukaryotic cell)
0000548 (animal cell)
0000566 (angioblastic mesenchymal cell)
0000723 (somatic stem cell)
0000763 (myeloid cell)
0000837 (hematopoietic multipotent progenitor cell)
0000988 (hematopoietic cell)
0002032 (hematopoietic oligopotent progenitor cell)
0002320 (connective tissue cell)
0002371 (somatic cell)

DOID: Disease
0050686 (organ system cancer)
0060083 (immune system cancer)
1036 (chronic leukemia)
1240 (leukemia)
14566 (disease of cellular proliferation)
162 (cancer)
2531 (hematologic cancer)
4 (disease)
8692 (myeloid leukemia)

UBERON: Anatomy
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000479 (tissue)
0001062 (anatomical entity)
0002384 (connective tissue)

FF: FANTOM5
NA

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA

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