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MCL coexpression mm9:1721

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Phase1 CAGE Peaks

 Short description
Mm9::chr18:5591866..5591900,+p1@Zeb1
Mm9::chr7:17428370..17428389,+p5@Prkd2
Mm9::chr7:17428398..17428426,+p3@Prkd2
Mm9::chr7:17428435..17428452,+p4@Prkd2
Mm9::chr7:28645585..28645659,+p1@Zfp607


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>


Uber Anatomy
Ontology termp-valuen
respiratory tract1.44e-0941
respiratory system2.99e-0942
primordium3.07e-09134
hemopoietic organ8.92e-0929
immune organ8.92e-0929
lateral plate mesoderm1.57e-0887
mesoderm2.86e-08120
mesoderm-derived structure2.86e-08120
presumptive mesoderm2.86e-08120
thymus1.56e-0723
neck1.56e-0723
respiratory system epithelium1.56e-0723
hemolymphoid system gland1.56e-0723
pharyngeal epithelium1.56e-0723
thymic region1.56e-0723
pharyngeal gland1.56e-0723
entire pharyngeal arch endoderm1.56e-0723
thymus primordium1.56e-0723
early pharyngeal endoderm1.56e-0723
pharynx2.24e-0724
upper respiratory tract2.24e-0724
chordate pharynx2.24e-0724
pharyngeal arch system2.24e-0724
pharyngeal region of foregut2.24e-0724
mixed endoderm/mesoderm-derived structure2.63e-0735
gland of gut3.89e-0724
anterior region of body4.96e-0743


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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