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Genes, TSS regions, motifs, samples, etc profiled in FANTOM5.

Usage

• Just click any in the left menue
• Or, keyword search on top of this page.
• Or, make a complex query at Special:Ask, if you are familiar with Semantic MediaWIki

Note

• we are focusing on phase1 freeze, and we are still keep updating this.
• contact: KAWAJI, Hideya <kawaji@gsc.riken.jp>, SHIMOJI, Hisashi <hisashi.shimoji@dnaform.jp>, or WP4 <fantom5-wp4@gsc.riken.jp>

Data source

See Data_source

Other browsers/resources

• FANTOM5 collaboration wiki
• zenbu
• UCSC mirror (at RIKEN)
• FONSE (Fantomy ONtology Sample Explorer) (user:terry , pass: T34s377)
• BioLayout
• FANTOM5 promoter / enhancer selector (by Kang and Albin; pass: 9EPefA4e)

• phase1 data freeze
• latest update

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• Samples by
  • Browse_samples|Names
  • Browse_facet|Categories
  • Browse_series|Series of experiments
  • Browse_datatype|Data type
• MCL coexpression
  • Browse_coexpression_clusters|Human
  • Browse_MCL_coexpression_mouse|Mouse
• Ontologies
  • FF_Ontology_terms_list|FANTOM5 (FF)
  • Cell_Ontology_terms_list|Cell Type (CL)
  • Human_Disease_Ontology_terms_list|Disease (DOID)
  • Uber_Anatomy_Ontology_terms_list|Anatomy (UBERON)
• Motif
  • Browse_MacroAPE|MacroAPE
  • Browse_swissregulon|Swissregulon
• Transcription Factors
  • Browse Transcription Factors hg19|Human
  • Browse Transcription Factors mm9|Mouse
• Genes, etc
  • Browse_genes|Genes
  • Browse_tss|TSSs