MCL coexpression mm9:642

Phase1 CAGE Peaks

	Short description
Mm9::chr10:79755159..79755181,+	p2@LOC100046223 p2@Rps15
Mm9::chr15:5066589..5066629,+	p2@Gm13826 p2@Rpl37
Mm9::chr1:16094477..16094516,-	p1@Rpl7
Mm9::chr1:39424661..39424693,+	p2@Gm10191 p2@Gm13004 p2@Gm7689 p2@Gm8759 p2@LOC100505081 p2@LOC638399 p2@Rpl31
Mm9::chr1:72757812..72757826,+	p2@Gm14173 p2@Rpl37a
Mm9::chr2:26766267..26766289,+	p2@Gm11362 p2@Rpl7a
Mm9::chr3:85946515..85946558,-	p1@Rps3a
Mm9::chr5:121654486..121654508,+	p2@Gm6136 p2@Rpl6
Mm9::chr7:25669587..25669626,+	p1@Rps19-ps4 p1@Rps19-ps6 p1@Rps19
Mm9::chr9:106331730..106331788,+	p2@Gm10913 p2@Gm13141 p2@Gm13841 p2@Gm6344 p2@Gm6887 p2@Gm8210 p2@Rpl29
Mm9::chrX:99384678..99384703,-	p2@Rps4x

Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

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GO ID	GO name	FDR corrected p-value
GO:0005830	cytosolic ribosome (sensu Eukaryota)	9.557703969472e-07
GO:0044445	cytosolic part	3.70361028817039e-06
GO:0042254	ribosome biogenesis and assembly	5.71244485397111e-06
GO:0003735	structural constituent of ribosome	7.83096239860434e-06
GO:0005840	ribosome	7.83096239860434e-06
GO:0022613	ribonucleoprotein complex biogenesis and assembly	1.01992129043795e-05
GO:0005829	cytosol	4.99082788914681e-05
GO:0006412	translation	8.83646829602944e-05
GO:0030529	ribonucleoprotein complex	8.83646829602944e-05
GO:0033279	ribosomal subunit	0.000190297560796954
GO:0009059	macromolecule biosynthetic process	0.000218456752708339
GO:0044249	cellular biosynthetic process	0.000454896551631285
GO:0006996	organelle organization and biogenesis	0.000937821005258417
GO:0009058	biosynthetic process	0.000966962585761618
GO:0043232	intracellular non-membrane-bound organelle	0.0017987821946727
GO:0043228	non-membrane-bound organelle	0.0017987821946727
GO:0032991	macromolecular complex	0.00409170790312737
GO:0016043	cellular component organization and biogenesis	0.00632335480551472
GO:0005843	cytosolic small ribosomal subunit (sensu Eukaryota)	0.00677704069835615
GO:0003723	RNA binding	0.00703688467131023
GO:0044267	cellular protein metabolic process	0.00746877384961488
GO:0044260	cellular macromolecule metabolic process	0.00746877384961488
GO:0010467	gene expression	0.00746877384961488
GO:0019538	protein metabolic process	0.00766292771031945
GO:0019843	rRNA binding	0.00845744660960953
GO:0044444	cytoplasmic part	0.0101197450132424
GO:0015935	small ribosomal subunit	0.0102103889682027
GO:0015934	large ribosomal subunit	0.0105009629883662
GO:0005737	cytoplasm	0.0463808671729333
GO:0043170	macromolecule metabolic process	0.0463808671729333

Relative expression of the co-expression cluster over median <br>Analyst:

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Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

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Cell Type

Ontology term	p-value	n

Uber Anatomy

Ontology term	p-value	n

Disease

Ontology term	p-value	n

TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

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Novel motifs

JASPAR motifs

Motifs	-log10(p-value)
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