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MCL coexpression mm9:1403

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Phase1 CAGE Peaks

 Short description
Mm9::chr17:66694756..66694765,-p@chr17:66694756..66694765
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Mm9::chr17:66699008..66699012,-p@chr17:66699008..66699012
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Mm9::chr17:66707060..66707063,-p@chr17:66707060..66707063
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Mm9::chr17:66762580..66762581,-p@chr17:66762580..66762581
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Mm9::chr17:66769038..66769039,-p@chr17:66769038..66769039
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Mm9::chr17:66799055..66799099,-p1@1110012J17Rik


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>


Uber Anatomy
Ontology termp-valuen
neurectoderm1.50e-1164
neural plate1.50e-1164
presumptive neural plate1.50e-1164
pre-chordal neural plate1.09e-1049
ecto-epithelium1.13e-1073
brain5.30e-0847
future brain5.30e-0847
lung9.32e-0814
respiratory tube9.32e-0814
respiration organ9.32e-0814
pair of lungs9.32e-0814
lung primordium9.32e-0814
lung bud9.32e-0814
regional part of brain1.36e-0746
neural tube3.02e-0752
neural rod3.02e-0752
future spinal cord3.02e-0752
neural keel3.02e-0752
thoracic cavity element5.44e-0717
thoracic segment organ5.44e-0717
thoracic cavity5.44e-0717
thoracic segment of trunk5.44e-0717
respiratory primordium5.44e-0717
endoderm of foregut5.44e-0717
ectoderm-derived structure6.57e-0795
ectoderm6.57e-0795
presumptive ectoderm6.57e-0795
anterior neural tube9.55e-0740


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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