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Coexpression cluster:C76

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Full id: C76_argyrophil_gastrointestinal_temporal_duodenum_neuroblastoma_merkel_smallcell



Phase1 CAGE Peaks

Hg19::chr10:18580030..18580069,+p@chr10:18580030..18580069
+
Hg19::chr10:26223126..26223136,+p6@MYO3A
Hg19::chr10:26223137..26223175,+p1@MYO3A
Hg19::chr10:26223200..26223212,+p4@MYO3A
Hg19::chr10:26223250..26223262,+p2@MYO3A
Hg19::chr10:26223415..26223425,+p@chr10:26223415..26223425
+
Hg19::chr10:26506919..26506931,-p@chr10:26506919..26506931
-
Hg19::chr10:66381988..66381993,-p@chr10:66381988..66381993
-
Hg19::chr10:66386701..66386711,-p@chr10:66386701..66386711
-
Hg19::chr11:17435105..17435116,-p3@ABCC8
Hg19::chr11:2428348..2428358,-p@chr11:2428348..2428358
-
Hg19::chr11:2428376..2428392,-p@chr11:2428376..2428392
-
Hg19::chr11:2435409..2435443,-p@chr11:2435409..2435443
-
Hg19::chr11:2436019..2436030,-p@chr11:2436019..2436030
-
Hg19::chr11:2436040..2436051,-p@chr11:2436040..2436051
-
Hg19::chr11:2436082..2436085,-p@chr11:2436082..2436085
-
Hg19::chr11:2436541..2436561,-p@chr11:2436541..2436561
-
Hg19::chr11:2439293..2439304,-p@chr11:2439293..2439304
-
Hg19::chr11:31838106..31838128,+p9@RCN1
Hg19::chr11:79742692..79742706,+p@chr11:79742692..79742706
+
Hg19::chr12:131117116..131117123,-p@chr12:131117116..131117123
-
Hg19::chr12:131117129..131117135,-p@chr12:131117129..131117135
-
Hg19::chr12:131117147..131117158,-p@chr12:131117147..131117158
-
Hg19::chr12:131117194..131117202,-p@chr12:131117194..131117202
-
Hg19::chr12:14849414..14849417,-p8@GUCY2C
Hg19::chr12:14849430..14849439,-p4@GUCY2C
Hg19::chr12:14849447..14849450,-p7@GUCY2C
Hg19::chr12:14849455..14849469,-p2@GUCY2C
Hg19::chr12:14849470..14849540,-p1@GUCY2C
Hg19::chr13:112170746..112170756,-p@chr13:112170746..112170756
-
Hg19::chr13:112170767..112170779,-p@chr13:112170767..112170779
-
Hg19::chr13:112170781..112170788,-p@chr13:112170781..112170788
-
Hg19::chr13:112170794..112170810,-p@chr13:112170794..112170810
-
Hg19::chr13:114202163..114202178,+p@chr13:114202163..114202178
+
Hg19::chr13:114202197..114202216,+p@chr13:114202197..114202216
+
Hg19::chr13:114202634..114202655,+p@chr13:114202634..114202655
+
Hg19::chr13:33590553..33590570,+p1@KL
Hg19::chr13:33642579..33642583,+p@chr13:33642579..33642583
+
Hg19::chr14:23465559..23465575,-p@chr14:23465559..23465575
-
Hg19::chr14:93388970..93388985,+p3@CHGA
Hg19::chr14:93388989..93389000,+p6@CHGA
Hg19::chr14:93389002..93389019,+p2@CHGA
Hg19::chr14:93389079..93389083,+p24@CHGA
Hg19::chr14:93389488..93389501,+p1@CHGA
Hg19::chr14:93397636..93397669,-p@chr14:93397636..93397669
-
Hg19::chr14:93397923..93397948,-p@chr14:93397923..93397948
-
Hg19::chr15:69854153..69854167,+p3@ENST00000498938
Hg19::chr15:69854189..69854206,+p2@ENST00000498938
Hg19::chr15:69854209..69854229,+p1@ENST00000498938
Hg19::chr16:1481075..1481082,+p@chr16:1481075..1481082
+
Hg19::chr16:2521470..2521487,+p2@NTN3
Hg19::chr16:2521503..2521514,+p5@NTN3
Hg19::chr16:2521599..2521611,+p7@NTN3
Hg19::chr16:88571559..88571611,+p@chr16:88571559..88571611
+
Hg19::chr16:89688655..89688668,+p@chr16:89688655..89688668
+
Hg19::chr16:89688715..89688726,+p@chr16:89688715..89688726
+
Hg19::chr17:26911586..26911592,-p9@SPAG5
Hg19::chr17:26911596..26911605,-p8@SPAG5
Hg19::chr17:27892902..27892907,+p@chr17:27892902..27892907
+
Hg19::chr17:27892922..27892925,+p@chr17:27892922..27892925
+
Hg19::chr17:27892945..27892952,+p@chr17:27892945..27892952
+
Hg19::chr17:32314322..32314327,-p@chr17:32314322..32314327
-
Hg19::chr17:32314379..32314387,-p@chr17:32314379..32314387
-
Hg19::chr17:39868577..39868585,+p1@GAST
Hg19::chr17:73553913..73553927,+p2@LLGL2
Hg19::chr17:73642712..73642733,+p3@C17orf110
Hg19::chr17:77788401..77788413,+p@chr17:77788401..77788413
+
Hg19::chr17:79225428..79225433,-p@chr17:79225428..79225433
-
Hg19::chr17:79225437..79225448,-p@chr17:79225437..79225448
-
Hg19::chr17:80972359..80972396,-p@chr17:80972359..80972396
-
Hg19::chr18:13165707..13165731,-p@chr18:13165707..13165731
-
Hg19::chr18:34124482..34124497,+p16@FHOD3
Hg19::chr18:34124507..34124520,+p8@FHOD3
Hg19::chr18:39739337..39739348,+p@chr18:39739337..39739348
+
Hg19::chr18:39739349..39739374,+p@chr18:39739349..39739374
+
Hg19::chr18:39739379..39739393,+p@chr18:39739379..39739393
+
Hg19::chr18:46812963..46812973,-p@chr18:46812963..46812973
-
Hg19::chr18:74350663..74350688,-p@chr18:74350663..74350688
-
Hg19::chr19:13710923..13710935,-p@chr19:13710923..13710935
-
Hg19::chr19:13710998..13711005,-p@chr19:13710998..13711005
-
Hg19::chr19:16838056..16838070,+p@chr19:16838056..16838070
+
Hg19::chr19:18846389..18846407,+p8@CRTC1
Hg19::chr19:36611243..36611285,+p@chr19:36611243..36611285
+
Hg19::chr19:42928426..42928438,+p2@ENST00000457234
Hg19::chr19:7184762..7184771,-p@chr19:7184762..7184771
-
Hg19::chr19:7184803..7184814,-p@chr19:7184803..7184814
-
Hg19::chr19:7184828..7184838,-p@chr19:7184828..7184838
-
Hg19::chr1:109079557..109079589,-p@chr1:109079557..109079589
-
Hg19::chr1:117008868..117008875,+p@chr1:117008868..117008875
+
Hg19::chr1:159892447..159892482,-p@chr1:159892447..159892482
-
Hg19::chr1:165325006..165325012,-p2@LMX1A
Hg19::chr1:2986285..2986306,-p@chr1:2986285..2986306
-
Hg19::chr1:54417667..54417685,+p9@LRRC42
Hg19::chr1:54417689..54417696,+p12@LRRC42
Hg19::chr20:1856502..1856513,-p@chr20:1856502..1856513
-
Hg19::chr20:20392704..20392711,-p@chr20:20392704..20392711
-
Hg19::chr20:20392726..20392736,-p@chr20:20392726..20392736
-
Hg19::chr20:20392756..20392765,-p@chr20:20392756..20392765
-
Hg19::chr20:21082096..21082103,-p7@LINC00237
Hg19::chr20:21082105..21082117,-p2@LINC00237
Hg19::chr20:21503214..21503241,-p@chr20:21503214..21503241
-
Hg19::chr20:21503302..21503344,-p@chr20:21503302..21503344
-
Hg19::chr20:21503356..21503373,-p@chr20:21503356..21503373
-
Hg19::chr20:21918384..21918387,+p@chr20:21918384..21918387
+
Hg19::chr20:21918392..21918404,+p@chr20:21918392..21918404
+
Hg19::chr20:21918433..21918444,+p@chr20:21918433..21918444
+
Hg19::chr20:21918450..21918454,+p@chr20:21918450..21918454
+
Hg19::chr20:21918470..21918480,+p@chr20:21918470..21918480
+
Hg19::chr20:62130745..62130766,-p15@EEF1A2
Hg19::chr21:47588743..47588750,-p9@C21orf56
Hg19::chr21:47588853..47588891,-p6@C21orf56
Hg19::chr21:47738057..47738076,-p2@C21orf58
Hg19::chr21:47738112..47738133,-p3@C21orf58
Hg19::chr22:32555214..32555221,-p2@C22orf42
Hg19::chr22:32555284..32555296,-p1@C22orf42
Hg19::chr22:37505742..37505761,-p1@TMPRSS6
Hg19::chr22:37608500..37608509,-p7@SSTR3
Hg19::chr22:37608511..37608522,-p2@SSTR3
Hg19::chr22:37608711..37608730,-p8@SSTR3
Hg19::chr22:44377129..44377137,+p@chr22:44377129..44377137
+
Hg19::chr22:44377278..44377303,+p@chr22:44377278..44377303
+
Hg19::chr22:44535867..44535877,+p@chr22:44535867..44535877
+
Hg19::chr2:173600326..173600344,+p18@RAPGEF4
Hg19::chr2:182451404..182451414,-p@chr2:182451404..182451414
-
Hg19::chr2:182501137..182501145,-p@chr2:182501137..182501145
-
Hg19::chr2:182546258..182546267,+p@chr2:182546258..182546267
+
Hg19::chr2:182546303..182546317,+p@chr2:182546303..182546317
+
Hg19::chr2:182548429..182548438,-p@chr2:182548429..182548438
-
Hg19::chr2:182548440..182548448,-p@chr2:182548440..182548448
-
Hg19::chr2:182548451..182548457,-p@chr2:182548451..182548457
-
Hg19::chr2:209407361..209407372,+p@chr2:209407361..209407372
+
Hg19::chr2:219849897..219849928,-p2@FEV
Hg19::chr2:238647466..238647474,+p@chr2:238647466..238647474
+
Hg19::chr2:241836298..241836311,-p4@C2orf54
Hg19::chr2:3487019..3487031,-p@chr2:3487019..3487031
-
Hg19::chr2:9059355..9059366,-p@chr2:9059355..9059366
-
Hg19::chr2:9059377..9059382,-p@chr2:9059377..9059382
-
Hg19::chr3:127634202..127634213,+p8@KBTBD12
Hg19::chr3:149689576..149689588,-p@chr3:149689576..149689588
-
Hg19::chr3:169587717..169587728,-p1@LRRC31
Hg19::chr3:178137027..178137041,+p2@KCNMB2-IT1
Hg19::chr3:178137042..178137098,+p1@KCNMB2-IT1
Hg19::chr3:178213272..178213277,+p@chr3:178213272..178213277
+
Hg19::chr3:178235746..178235750,+p@chr3:178235746..178235750
+
Hg19::chr3:4810204..4810210,+p34@ITPR1
Hg19::chr3:73500257..73500273,-p@chr3:73500257..73500273
-
Hg19::chr3:73500279..73500290,-p@chr3:73500279..73500290
-
Hg19::chr4:142199946..142199958,-p1@ENST00000514347
Hg19::chr4:22737597..22737604,+p@chr4:22737597..22737604
+
Hg19::chr4:46391248..46391261,-p16@GABRA2
Hg19::chr4:46391473..46391496,-p8@GABRA2
Hg19::chr4:8012437..8012446,-p12@ABLIM2
Hg19::chr5:137610117..137610157,-p2@GFRA3
Hg19::chr5:137610161..137610174,-p3@GFRA3
Hg19::chr5:137610185..137610196,-p6@GFRA3
Hg19::chr5:137610230..137610244,-p5@GFRA3
Hg19::chr5:137610263..137610273,-p7@GFRA3
Hg19::chr5:137610280..137610295,-p4@GFRA3
Hg19::chr5:137610300..137610332,-p1@GFRA3
Hg19::chr5:170105957..170105992,-p@chr5:170105957..170105992
-
Hg19::chr6:117198376..117198383,+p2@RFX6
Hg19::chr6:117198400..117198441,+p1@RFX6
Hg19::chr6:117198458..117198464,+p4@RFX6
Hg19::chr6:138820685..138820701,-p16@NHSL1
Hg19::chr6:18208412..18208420,+p@chr6:18208412..18208420
+
Hg19::chr6:18208425..18208436,+p@chr6:18208425..18208436
+
Hg19::chr6:20705180..20705181,+p@chr6:20705180..20705181
+
Hg19::chr6:25661559..25661563,+p@chr6:25661559..25661563
+
Hg19::chr6:25661565..25661601,+p@chr6:25661565..25661601
+
Hg19::chr6:25661603..25661614,+p@chr6:25661603..25661614
+
Hg19::chr6:25661625..25661634,+p@chr6:25661625..25661634
+
Hg19::chr6:25661650..25661661,+p@chr6:25661650..25661661
+
Hg19::chr6:25661814..25661832,+p@chr6:25661814..25661832
+
Hg19::chr6:39282405..39282406,-p5@KCNK17
Hg19::chr6:39290371..39290388,-p4@KCNK16
Hg19::chr6:39290407..39290416,-p5@KCNK16
Hg19::chr6:39290436..39290454,-p3@KCNK16
Hg19::chr6:39290466..39290482,-p2@KCNK16
Hg19::chr6:39290499..39290502,-p8@KCNK16
Hg19::chr6:39290752..39290794,-p1@KCNK16
Hg19::chr6:39290815..39290820,-p6@KCNK16
Hg19::chr6:49467576..49467583,+p5@GLYATL3
Hg19::chr6:49467630..49467640,+p3@GLYATL3
Hg19::chr6:49467646..49467657,+p1@GLYATL3
Hg19::chr6:49467678..49467693,+p2@GLYATL3
Hg19::chr6:49467718..49467724,+p4@GLYATL3
Hg19::chr7:1140919..1140936,+p@chr7:1140919..1140936
+
Hg19::chr7:127258120..127258138,-p3@PAX4
Hg19::chr7:127258139..127258173,-p1@PAX4
Hg19::chr7:127258190..127258201,-p2@PAX4
Hg19::chr7:127260123..127260165,+p@chr7:127260123..127260165
+
Hg19::chr7:44229027..44229055,-p1@GCK
Hg19::chr7:44360862..44360872,+p@chr7:44360862..44360872
+
Hg19::chr7:4474103..4474113,+p@chr7:4474103..4474113
+
Hg19::chr7:4476270..4476275,-p@chr7:4476270..4476275
-
Hg19::chr7:81779566..81779574,-p@chr7:81779566..81779574
-
Hg19::chr7:81803355..81803360,-p@chr7:81803355..81803360
-
Hg19::chr7:81824973..81824977,-p@chr7:81824973..81824977
-
Hg19::chr7:92834958..92834964,-p6@HEPACAM2
Hg19::chr7:92838072..92838076,-p@chr7:92838072..92838076
-
Hg19::chr7:92855762..92855790,-p1@HEPACAM2
Hg19::chr7:96125173..96125184,-p@chr7:96125173..96125184
-
Hg19::chr8:121054330..121054333,-p@chr8:121054330..121054333
-
Hg19::chr8:121056304..121056311,-p@chr8:121056304..121056311
-
Hg19::chr8:121056349..121056360,-p@chr8:121056349..121056360
-
Hg19::chr8:121056549..121056554,-p@chr8:121056549..121056554
-
Hg19::chr8:121058540..121058543,-p@chr8:121058540..121058543
-
Hg19::chr8:121062548..121062551,-p@chr8:121062548..121062551
-
Hg19::chr8:121066549..121066554,-p@chr8:121066549..121066554
-
Hg19::chr8:14066604..14066622,-p@chr8:14066604..14066622
-
Hg19::chr8:22000519..22000525,-p@chr8:22000519..22000525
-
Hg19::chr8:22001308..22001310,-p@chr8:22001308..22001310
-
Hg19::chr8:33464773..33464782,+p@chr8:33464773..33464782
+
Hg19::chr8:41484957..41484961,-p@chr8:41484957..41484961
-
Hg19::chr8:41485005..41485017,-p@chr8:41485005..41485017
-
Hg19::chr8:41485037..41485047,-p@chr8:41485037..41485047
-
Hg19::chr8:41485173..41485181,-p@chr8:41485173..41485181
-
Hg19::chr8:41485201..41485208,-p@chr8:41485201..41485208
-
Hg19::chr8:41485217..41485222,-p@chr8:41485217..41485222
-
Hg19::chr8:41486855..41486866,-p@chr8:41486855..41486866
-
Hg19::chr8:41508303..41508308,-p2@NKX6-3
Hg19::chr8:41508327..41508355,-p1@NKX6-3
Hg19::chr8:41508473..41508497,+p@chr8:41508473..41508497
+
Hg19::chr8:41508583..41508595,+p@chr8:41508583..41508595
+
Hg19::chr8:41508626..41508633,+p@chr8:41508626..41508633
+
Hg19::chr8:41512768..41512771,+p@chr8:41512768..41512771
+
Hg19::chr8:41512838..41512845,+p@chr8:41512838..41512845
+
Hg19::chr9:116861343..116861349,-p7@KIF12
Hg19::chr9:116861558..116861582,-p1@KIF12
Hg19::chr9:129097583..129097594,+p9@FAM125B
Hg19::chr9:129097637..129097639,+p29@FAM125B
Hg19::chr9:130404686..130404720,+p@chr9:130404686..130404720
+
Hg19::chr9:134420922..134420947,+p@chr9:134420922..134420947
+
Hg19::chr9:136753303..136753309,-p@chr9:136753303..136753309
-
Hg19::chr9:139658908..139658936,-p2@LCN15
Hg19::chr9:35237460..35237466,+p@chr9:35237460..35237466
+
Hg19::chr9:35237473..35237478,+p@chr9:35237473..35237478
+
Hg19::chrX:129519632..129519657,-p1@GPR119


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

No results for this coexpression

Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data

No GOStat results

Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs



JASPAR motifs

Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}



ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data

No analysis results for this cluster

Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data

"{{{coexpression_dpi_cluster_scores_median}}}" is not a number.

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