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MCL coexpression mm9:1320

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Phase1 CAGE Peaks

 Short description
Mm9::chr12:110853798..110853809,-p@chr12:110853798..110853809
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Mm9::chr2:157386309..157386340,+p3@Nnat
Mm9::chr2:157386400..157386411,+p5@Nnat
Mm9::chr2:157386501..157386525,+p2@Nnat
Mm9::chr2:157386548..157386564,+p4@Nnat
Mm9::chr2:157386705..157386709,-p@chr2:157386705..157386709
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Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>


Cell Type
Ontology termp-valuen
CNS neuron (sensu Vertebrata)1.27e-1423
neuroblast (sensu Vertebrata)1.27e-1423
neuron2.40e-0833
neuronal stem cell2.40e-0833
neuroblast2.40e-0833
electrically signaling cell2.40e-0833

Uber Anatomy
Ontology termp-valuen
neurectoderm9.49e-1164
neural plate9.49e-1164
presumptive neural plate9.49e-1164
pre-chordal neural plate1.01e-1049
regional part of nervous system2.88e-1054
neural tube3.68e-1052
neural rod3.68e-1052
future spinal cord3.68e-1052
neural keel3.68e-1052
ecto-epithelium4.46e-1073
regional part of forebrain1.82e-0939
forebrain1.82e-0939
future forebrain1.82e-0939
anterior neural tube5.52e-0940
pituitary gland9.38e-098
gland of diencephalon9.38e-098
neuroendocrine gland9.38e-098
ectoderm-derived structure1.90e-0895
ectoderm1.90e-0895
presumptive ectoderm1.90e-0895
regional part of brain9.20e-0846
structure with developmental contribution from neural crest9.27e-0892
central nervous system1.66e-0773
diencephalon2.03e-0710
future diencephalon2.03e-0710
brain2.15e-0747
future brain2.15e-0747
nervous system5.66e-0775
gray matter8.75e-0734


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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