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MCL coexpression mm9:1291

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Phase1 CAGE Peaks

 Short description
Mm9::chr11:54336374..54336397,+p1@Rapgef6
Mm9::chr12:112776360..112776454,+p1@Eif5
p1@LOC100047658
Mm9::chr12:56087290..56087295,-p4@Baz1a
p4@LOC100505185
Mm9::chr12:56087315..56087329,-p1@Baz1a
p1@LOC100505185
Mm9::chr12:56087332..56087349,-p2@Baz1a
p2@LOC100505185
Mm9::chr12:56087350..56087368,-p3@Baz1a
p3@LOC100505185


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>


Uber Anatomy
Ontology termp-valuen
digestive system6.04e-13116
digestive tract6.04e-13116
primitive gut6.04e-13116
endoderm-derived structure6.97e-13118
endoderm6.97e-13118
presumptive endoderm6.97e-13118
subdivision of digestive tract1.72e-12114
endo-epithelium3.98e-1169
foregut1.93e-1080
hemopoietic organ4.90e-1029
immune organ4.90e-1029
hemolymphoid system7.13e-1048
immune system7.13e-1048
gut epithelium1.86e-0955
mixed endoderm/mesoderm-derived structure3.44e-0935
hematopoietic system6.17e-0945
blood island6.17e-0945
respiratory tract6.58e-0941
respiratory system9.57e-0942
unilaminar epithelium2.35e-0866
segment of respiratory tract1.12e-0727
thymus2.67e-0723
neck2.67e-0723
respiratory system epithelium2.67e-0723
hemolymphoid system gland2.67e-0723
pharyngeal epithelium2.67e-0723
thymic region2.67e-0723
pharyngeal gland2.67e-0723
entire pharyngeal arch endoderm2.67e-0723
thymus primordium2.67e-0723
early pharyngeal endoderm2.67e-0723
pharynx4.07e-0724
upper respiratory tract4.07e-0724
chordate pharynx4.07e-0724
pharyngeal arch system4.07e-0724
pharyngeal region of foregut4.07e-0724
gland of gut4.57e-0724


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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