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MCL coexpression mm9:94

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Phase1 CAGE Peaks

 Short description
Mm9::chr10:115712547..115712560,+p5@Ptprb
Mm9::chr10:126952216..126952224,+p@chr10:126952216..126952224
+
Mm9::chr10:60846080..60846120,-p1@X99384
Mm9::chr10:62128117..62128140,-p@chr10:62128117..62128140
-
Mm9::chr10:92773591..92773623,-p1@Elk3
Mm9::chr11:101107719..101107736,+p1@Ramp2
Mm9::chr11:106243868..106243926,-p1@Icam2
Mm9::chr11:106576565..106576607,-p1@Pecam1
Mm9::chr11:115673450..115673544,-p@chr11:115673450..115673544
-
Mm9::chr11:115674877..115674907,-p1@Caskin2
Mm9::chr11:68770375..68770411,-p1@Arhgef15
Mm9::chr11:68770477..68770496,+p@chr11:68770477..68770496
+
Mm9::chr11:68770947..68770987,-p2@Arhgef15
Mm9::chr11:70043257..70043263,-p1@Bcl6b
Mm9::chr11:78748924..78748935,+p@chr11:78748924..78748935
+
Mm9::chr11:86829486..86829491,+p@chr11:86829486..86829491
+
Mm9::chr11:87029962..87029983,+p@chr11:87029962..87029983
+
Mm9::chr11:95703768..95703797,-p3@Abi3
Mm9::chr11:95704038..95704053,+p4@Gngt2
Mm9::chr12:118896496..118896518,+p@chr12:118896496..118896518
+
Mm9::chr12:59369590..59369620,-p@chr12:59369590..59369620
-
Mm9::chr12:59369827..59369893,-p1@Clec14a
Mm9::chr12:59369917..59369930,-p2@Clec14a
Mm9::chr12:59370149..59370174,-p3@Clec14a
Mm9::chr12:74685221..74685232,+p@chr12:74685221..74685232
+
Mm9::chr13:114584854..114584879,+p3@Arl15
Mm9::chr13:115891766..115891781,-p9@Itga1
Mm9::chr13:115891826..115891864,-p3@Itga1
Mm9::chr13:38442078..38442081,+p@chr13:38442078..38442081
+
Mm9::chr13:99954640..99954681,+p1@Zfp366
Mm9::chr13:99954688..99954710,+p2@Zfp366
Mm9::chr14:102222288..102222307,+p@chr14:102222288..102222307
+
Mm9::chr14:56402844..56402856,-p2@Adcy4
Mm9::chr14:56402864..56402910,-p1@Adcy4
Mm9::chr14:56402955..56403017,+p@chr14:56402955..56403017
+
Mm9::chr14:64562503..64562524,+p1@Sox7
Mm9::chr15:79227251..79227274,-p@chr15:79227251..79227274
-
Mm9::chr15:79227292..79227309,-p@chr15:79227292..79227309
-
Mm9::chr15:83000598..83000616,-p4@Cyb5r3
Mm9::chr15:89328390..89328399,+p@chr15:89328390..89328399
+
Mm9::chr15:89328414..89328425,+p@chr15:89328414..89328425
+
Mm9::chr15:89328433..89328443,+p@chr15:89328433..89328443
+
Mm9::chr15:89328444..89328477,+p@chr15:89328444..89328477
+
Mm9::chr15:89328479..89328500,+p@chr15:89328479..89328500
+
Mm9::chr16:38713118..38713129,-p10@Arhgap31
Mm9::chr16:85550631..85550647,-p1@Cyyr1
Mm9::chr16:85550669..85550677,-p2@Cyyr1
Mm9::chr16:94549999..94550018,+p2@Ripply3
Mm9::chr16:94550031..94550046,+p1@Ripply3
Mm9::chr17:24776906..24776950,+p@chr17:24776906..24776950
+
Mm9::chr17:24781964..24781973,-p5@Slc9a3r2
Mm9::chr17:24787215..24787256,-p1@Slc9a3r2
Mm9::chr17:25218083..25218146,-p1@Tmem204
Mm9::chr17:34701240..34701244,+p5@Notch4
Mm9::chr17:34701245..34701264,+p1@Notch4
Mm9::chr17:34701278..34701288,+p3@Notch4
Mm9::chr17:34701291..34701305,+p2@Notch4
Mm9::chr17:34701318..34701330,+p4@Notch4
Mm9::chr17:43497271..43497285,+p@chr17:43497271..43497285
+
Mm9::chr17:43497335..43497358,+p@chr17:43497335..43497358
+
Mm9::chr17:43497372..43497405,+p@chr17:43497372..43497405
+
Mm9::chr17:43526385..43526446,+p1@Gpr116
Mm9::chr17:43526450..43526462,+p4@Gpr116
Mm9::chr17:75835226..75835277,+p1@Rasgrp3
Mm9::chr18:32096924..32096942,+p@chr18:32096924..32096942
+
Mm9::chr18:35881965..35881981,-p2@Ecscr
Mm9::chr18:35881984..35882035,-p1@Ecscr
Mm9::chr18:38157182..38157194,-p3@Arap3
Mm9::chr18:38157197..38157223,-p2@Arap3
Mm9::chr18:38444045..38444062,-p1@Pcdh12
Mm9::chr18:44761374..44761391,-p@chr18:44761374..44761391
-
Mm9::chr18:61946290..61946345,-p1@Afap1l1
Mm9::chr1:10983533..10983559,+p2@Prex2
Mm9::chr1:10983563..10983701,+p1@Prex2
Mm9::chr1:4486505..4486527,-p5@Sox17
Mm9::chr1:54035355..54035374,-p@chr1:54035355..54035374
-
Mm9::chr2:119151549..119151553,+p1@Dll4
Mm9::chr2:130953128..130953197,+p1@Hspa12b
Mm9::chr2:145611996..145612010,+p4@Rin2
Mm9::chr2:145612015..145612043,+p3@Rin2
Mm9::chr2:148229675..148229678,-p@chr2:148229675..148229678
-
Mm9::chr2:148233842..148233863,-p1@Thbd
Mm9::chr2:151369692..151369745,+p@chr2:151369692..151369745
+
Mm9::chr2:152891724..152891735,+p1@BC020535
Mm9::chr2:181406327..181406350,-p1@Sox18
Mm9::chr2:26439378..26439394,+p1@Egfl7
Mm9::chr2:32583202..32583232,+p1@Sh2d3c
Mm9::chr2:35288072..35288143,-p3@Ggta1
Mm9::chr2:73559995..73560026,-p@chr2:73559995..73560026
-
Mm9::chr3:121603454..121603482,-p@chr3:121603454..121603482
-
Mm9::chr3:121656244..121656263,+p3@Arhgap29
Mm9::chr3:89635274..89635306,+p1@She
Mm9::chr3:89635317..89635328,+p2@She
Mm9::chr4:118162366..118162382,-p1@Tie1
Mm9::chr4:118162394..118162436,-p2@Tie1
Mm9::chr4:126991224..126991242,-p1@Gja4
Mm9::chr4:133809991..133810043,-p1@Grrp1
Mm9::chr4:137476659..137476676,+p8@Ece1
Mm9::chr4:137476697..137476745,+p2@Ece1
Mm9::chr4:151470845..151470891,+p2@Plekhg5
Mm9::chr4:62280682..62280703,+p10@Rgs3
Mm9::chr4:62280716..62280753,+p3@Rgs3
Mm9::chr4:62280754..62280774,+p6@Rgs3
Mm9::chr4:94405967..94405989,+p3@Tek
Mm9::chr4:94406139..94406146,+p8@Tek
Mm9::chr4:94406153..94406175,+p2@Tek
Mm9::chr5:112717754..112717788,+p2@Tpst2
Mm9::chr5:23870622..23870642,+p1@Nos3
Mm9::chr5:76374472..76374488,-p1@Kdr
Mm9::chr6:17231216..17231227,+p3@Cav2
Mm9::chr6:17231304..17231364,+p1@Cav2
Mm9::chr6:91928951..91928977,+p2@Fgd5
Mm9::chr6:92431158..92431208,-p5@Prickle2
Mm9::chr7:134027479..134027514,-p@chr7:134027479..134027514
-
Mm9::chr7:148647627..148647656,+p2@Efcab4a
Mm9::chr7:150295132..150295160,+p4@Kcnq1
Mm9::chr7:46799790..46799822,+p@chr7:46799790..46799822
+
Mm9::chr7:52882852..52882863,+p2@Rasip1
Mm9::chr7:52882872..52882902,+p1@Rasip1
Mm9::chr8:108137126..108137143,+p@chr8:108137126..108137143
+
Mm9::chr8:108137146..108137166,+p@chr8:108137146..108137166
+
Mm9::chr8:28217914..28217952,-p@chr8:28217914..28217952
-
Mm9::chr8:37676912..37676943,-p3@A730069N07Rik
p3@Dlc1
Mm9::chr8:37676944..37676975,-p1@A730069N07Rik
p1@Dlc1
Mm9::chr8:37676991..37677002,-p6@A730069N07Rik
p6@Dlc1
Mm9::chr8:42127023..42127030,-p8@Mtus1
Mm9::chr8:73919693..73919720,-p1@Ushbp1
Mm9::chr8:73919730..73919739,-p2@Ushbp1
Mm9::chr9:107469198..107469228,-p@chr9:107469198..107469228
-
Mm9::chr9:118515805..118515869,+p1@Itga9
Mm9::chr9:121807527..121807541,+p1@Ccbp2
Mm9::chr9:121807576..121807584,+p2@Ccbp2
Mm9::chr9:37335656..37335733,+p1@Esam
Mm9::chr9:48122507..48122526,+p@chr9:48122507..48122526
+
Mm9::chr9:63862840..63862842,-p@chr9:63862840..63862842
-
Mm9::chrX:6154377..6154412,+p2@Shroom4


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


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