Personal tools

UBERON:0009617: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
(Created page with "{{UBERON |id=UBERON:0009617 |name=head paraxial mesenchyme |namespace= |def="Bilateral mesenchymal mesoderm parallel and immediately adjacent to the neural tube/notochord;...")
 
No edit summary
Line 21: Line 21:
|part_of=UBERON:0003077;;UBERON:0005253
|part_of=UBERON:0003077;;UBERON:0005253
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|preceded_by=
}}
}}

Revision as of 17:26, 15 June 2012

Name:head paraxial mesenchyme
Definition:"Bilateral mesenchymal mesoderm parallel and immediately adjacent to the neural tube/notochord; it generates a subset of extra-ocular, and other head, muscles." [PMID:21610022]
Xrefs:
links:

EHDAA:364
EHDAA2:0000736

EMAPA:16171
Synonyms: "cephalic paraxial mesenchyme" EXACT [UBERON:cjm]
"cephalic paraxial mesoderm" EXACT [UBERON:cjm]

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0003104(mesenchyme),UBERON:0005256(trunk mesenchyme),UBERON:0005291(embryonic tissue)
develops_from:UBERON:0000926(mesoderm)
part_of:UBERON:0003077(paraxial mesoderm),UBERON:0005253(head mesenchyme)



Children

develops from:UBERON:0004761 (cartilaginous neurocranium),UBERON:0007647 (ectomeninx)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0009617 (head paraxial mesenchyme), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.87e-86FFCP PHASE1:Mm9::chr9:42207375..42207384,-#_c6d67655ae3e8e9acffeefba96516e6ap@chr9:42207375..42207384, -
1.87e-86FFCP PHASE1:Mm9::chr2:67011956..67011967,+#_c6d67655ae3e8e9acffeefba96516e6ap1@Gm1322
1.87e-86FFCP PHASE1:Mm9::chr17:31335953..31335957,-#_c6d67655ae3e8e9acffeefba96516e6ap3@Tmprss3
1.87e-86FFCP PHASE2:Mm9::chr10:80806020..80806031,-#_c6d67655ae3e8e9acffeefba96516e6ap3@Gipc3
1.87e-86FFCP PHASE1:Mm9::chr3:154459231..154459240,+#_c6d67655ae3e8e9acffeefba96516e6ap@chr3:154459231..154459240, +
1.87e-86FFCP PHASE2:Mm9::chr6:86745686..86745727,-#_c6d67655ae3e8e9acffeefba96516e6ap@chr6:86745686..86745727, -
1.87e-86FFCP PHASE2:Mm9::chr10:67371994..67372010,+#_c6d67655ae3e8e9acffeefba96516e6ap@chr10:67371994..67372010, +
1.87e-86FFCP PHASE1:Mm9::chr1:154246932..154246939,+#_c6d67655ae3e8e9acffeefba96516e6ap7@Glt25d2
1.87e-86FFCP PHASE1:Mm9::chr14:102297747..102297765,+#_c6d67655ae3e8e9acffeefba96516e6ap@chr14:102297747..102297765, +
1.87e-86FFCP PHASE1:Mm9::chr5:30710455..30710464,-#_c6d67655ae3e8e9acffeefba96516e6ap9@Otof
1.87e-86FFCP PHASE1:Mm9::chr7:141605556..141605563,-#_c6d67655ae3e8e9acffeefba96516e6ap@chr7:141605556..141605563, -
1.87e-86FFCP PHASE1:Mm9::chr1:194818647..194818660,-#_c6d67655ae3e8e9acffeefba96516e6ap@chr1:194818647..194818660, -
1.87e-86FFCP PHASE2:Mm9::chr3:31585340..31585360,+#_c6d67655ae3e8e9acffeefba96516e6ap@chr3:31585340..31585360, +
1.87e-86FFCP PHASE2:Mm9::chr1:172843796..172843799,-#_c6d67655ae3e8e9acffeefba96516e6ap@chr1:172843796..172843799, -
1.87e-86FFCP PHASE2:Mm9::chr5:30710455..30710464,-#_c6d67655ae3e8e9acffeefba96516e6ap9@Otof
1.87e-86FFCP PHASE1:Mm9::chr19:22767090..22767099,+#_c6d67655ae3e8e9acffeefba96516e6ap18@Trpm3
1.87e-86FFCP PHASE2:Mm9::chr15:97806034..97806061,+#_c6d67655ae3e8e9acffeefba96516e6ap@chr15:97806034..97806061, +
1.87e-86FFCP PHASE2:Mm9::chr14:20649897..20649907,+#_c6d67655ae3e8e9acffeefba96516e6ap@chr14:20649897..20649907, +
1.87e-86FFCP PHASE2:Mm9::chr10:108316802..108316807,-#_c6d67655ae3e8e9acffeefba96516e6ap@chr10:108316802..108316807, -
1.87e-86FFCP PHASE1:Mm9::chr8:125802236..125802251,-#_c6d67655ae3e8e9acffeefba96516e6ap3@Fanca
1.87e-86FFCP PHASE1:Mm9::chr2:121206677..121206683,-#_c6d67655ae3e8e9acffeefba96516e6ap3@Strc
1.87e-86FFCP PHASE2:Mm9::chr9:50968647..50968668,-#_c6d67655ae3e8e9acffeefba96516e6ap@chr9:50968647..50968668, -
1.87e-86FFCP PHASE2:Mm9::chr14:63099970..63099980,-#_c6d67655ae3e8e9acffeefba96516e6ap@chr14:63099970..63099980, -
1.87e-86FFCP PHASE2:Mm9::chr9:42207852..42207876,-#_c6d67655ae3e8e9acffeefba96516e6ap2@Tecta
1.87e-86FFCP PHASE1:Mm9::chr18:38104702..38104718,-#_c6d67655ae3e8e9acffeefba96516e6ap@chr18:38104702..38104718, -
1.87e-86FFCP PHASE1:Mm9::chr6:113251570..113251578,+#_c6d67655ae3e8e9acffeefba96516e6ap@chr6:113251570..113251578, +
1.87e-86FFCP PHASE1:Mm9::chr2:9811162..9811171,-#_c6d67655ae3e8e9acffeefba96516e6ap2@9230102O04Rik
1.87e-86FFCP PHASE1:Mm9::chr13:43699188..43699216,+#_c6d67655ae3e8e9acffeefba96516e6ap@chr13:43699188..43699216, +
1.87e-86FFCP PHASE2:Mm9::chr3:35012397..35012405,+#_c6d67655ae3e8e9acffeefba96516e6ap@chr3:35012397..35012405, +
1.87e-86FFCP PHASE2:Mm9::chr4:115556972..115556979,+#_c6d67655ae3e8e9acffeefba96516e6ap3@Kncn
1.87e-86FFCP PHASE2:Mm9::chr17:13983102..13983126,+#_c6d67655ae3e8e9acffeefba96516e6ap@chr17:13983102..13983126, +
1.87e-86FFCP PHASE1:Mm9::chr19:55255206..55255223,+#_c6d67655ae3e8e9acffeefba96516e6ap1@Tectb
1.87e-86FFCP PHASE2:Mm9::chr9:92087926..92087938,+#_c6d67655ae3e8e9acffeefba96516e6ap2@Plscr5
1.87e-86FFCP PHASE2:Mm9::chr9:42206730..42206739,-#_c6d67655ae3e8e9acffeefba96516e6ap@chr9:42206730..42206739, -
1.87e-86FFCP PHASE2:Mm9::chr3:58626291..58626298,-#_c6d67655ae3e8e9acffeefba96516e6ap@chr3:58626291..58626298, -
1.87e-86FFCP PHASE2:Mm9::chr5:3909290..3909299,+#_c6d67655ae3e8e9acffeefba96516e6ap@chr5:3909290..3909299, +
1.87e-86FFCP PHASE2:Mm9::chr8:125802236..125802251,-#_c6d67655ae3e8e9acffeefba96516e6ap3@Fanca
1.87e-86FFCP PHASE1:Mm9::chr10:80806020..80806031,-#_c6d67655ae3e8e9acffeefba96516e6ap3@Gipc3
1.87e-86FFCP PHASE1:Mm9::chr2:75320183..75320189,+#_c6d67655ae3e8e9acffeefba96516e6ap@chr2:75320183..75320189, +
1.87e-86FFCP PHASE1:Mm9::chr1:93218694..93218705,+#_c6d67655ae3e8e9acffeefba96516e6ap1@Espnl
1.87e-86FFCP PHASE2:Mm9::chr18:81327205..81327211,+#_c6d67655ae3e8e9acffeefba96516e6ap@chr18:81327205..81327211, +
1.87e-86FFCP PHASE2:Mm9::chr11:11599532..11599539,-#_c6d67655ae3e8e9acffeefba96516e6ap@chr11:11599532..11599539, -
1.87e-86FFCP PHASE2:Mm9::chr12:77084875..77084885,+#_c6d67655ae3e8e9acffeefba96516e6ap@chr12:77084875..77084885, +
1.87e-86FFCP PHASE1:Mm9::chr4:63079735..63079745,-#_c6d67655ae3e8e9acffeefba96516e6ap@chr4:63079735..63079745, -
1.87e-86FFCP PHASE2:Mm9::chr11:4689776..4689785,-#_c6d67655ae3e8e9acffeefba96516e6ap@chr11:4689776..4689785, -
1.87e-86FFCP PHASE2:Mm9::chr3:100724698..100724706,+#_c6d67655ae3e8e9acffeefba96516e6ap@chr3:100724698..100724706, +
1.87e-86FFCP PHASE2:Mm9::chr19:10536797..10536802,-#_c6d67655ae3e8e9acffeefba96516e6ap@chr19:10536797..10536802, -
1.87e-86FFCP PHASE2:Mm9::chr9:56208792..56208814,-#_c6d67655ae3e8e9acffeefba96516e6ap@chr9:56208792..56208814, -
1.87e-86FFCP PHASE1:Mm9::chr1:16651649..16651655,+#_c6d67655ae3e8e9acffeefba96516e6ap@chr1:16651649..16651655, +
1.87e-86FFCP PHASE1:Mm9::chr10:107349378..107349390,-#_c6d67655ae3e8e9acffeefba96516e6ap1@Otogl
1.87e-86FFCP PHASE2:Mm9::chr13:48087761..48087775,-#_c6d67655ae3e8e9acffeefba96516e6ap@chr13:48087761..48087775, -
1.87e-86FFCP PHASE1:Mm9::chr1:60561636..60561645,-#_c6d67655ae3e8e9acffeefba96516e6ap@chr1:60561636..60561645, -
1.87e-86FFCP PHASE1:Mm9::chr6:30619443..30619450,-#_c6d67655ae3e8e9acffeefba96516e6ap13@Tsga14
1.87e-86FFCP PHASE1:Mm9::chr11:102123554..102123566,+#_c6d67655ae3e8e9acffeefba96516e6ap4@BC030867
1.87e-86FFCP PHASE1:Mm9::chr8:13425469..13425503,+#_c6d67655ae3e8e9acffeefba96516e6ap@chr8:13425469..13425503, +
1.87e-86FFCP PHASE1:Mm9::chr15:65641779..65641790,+#_c6d67655ae3e8e9acffeefba96516e6ap@chr15:65641779..65641790, +
1.87e-86FFCP PHASE1:Mm9::chr13:78257518..78257522,+#_c6d67655ae3e8e9acffeefba96516e6ap@chr13:78257518..78257522, +
1.87e-86FFCP PHASE2:Mm9::chr19:55255206..55255223,+#_c6d67655ae3e8e9acffeefba96516e6ap1@Tectb
1.87e-86FFCP PHASE1:Mm9::chr11:75421384..75421397,+#_c6d67655ae3e8e9acffeefba96516e6ap@chr11:75421384..75421397, +
1.87e-86FFCP PHASE2:Mm9::chr3:106986057..106986062,+#_c6d67655ae3e8e9acffeefba96516e6ap1@Kcna10
1.87e-86FFCP PHASE2:Mm9::chr9:42208023..42208043,-#_c6d67655ae3e8e9acffeefba96516e6ap4@Tecta
1.87e-86FFCP PHASE2:Mm9::chrX:154140800..154140810,+#_c6d67655ae3e8e9acffeefba96516e6ap@chrX:154140800..154140810, +
1.87e-86FFCP PHASE2:Mm9::chr2:128881546..128881553,-#_c6d67655ae3e8e9acffeefba96516e6ap@chr2:128881546..128881553, -
1.87e-86FFCP PHASE1:Mm9::chr17:13983198..13983203,+#_c6d67655ae3e8e9acffeefba96516e6ap@chr17:13983198..13983203, +
1.87e-86FFCP PHASE2:Mm9::chr18:59222033..59222043,+#_c6d67655ae3e8e9acffeefba96516e6ap7@A730017C20Rik
1.87e-86FFCP PHASE2:Mm9::chr1:43454162..43454170,-#_c6d67655ae3e8e9acffeefba96516e6ap@chr1:43454162..43454170, -
1.87e-86FFCP PHASE2:Mm9::chr10:107349418..107349423,-#_c6d67655ae3e8e9acffeefba96516e6ap5@Otogl
1.87e-86FFCP PHASE1:Mm9::chr15:12848147..12848162,+#_c6d67655ae3e8e9acffeefba96516e6ap@chr15:12848147..12848162, +
1.87e-86FFCP PHASE1:Mm9::chr13:48087761..48087775,-#_c6d67655ae3e8e9acffeefba96516e6ap@chr13:48087761..48087775, -
1.87e-86FFCP PHASE2:Mm9::chr1:93218694..93218705,+#_c6d67655ae3e8e9acffeefba96516e6ap1@Espnl
1.87e-86FFCP PHASE2:Mm9::chr17:31335869..31335899,-#_c6d67655ae3e8e9acffeefba96516e6ap1@Tmprss3
1.87e-86FFCP PHASE2:Mm9::chr14:47293487..47293493,-#_c6d67655ae3e8e9acffeefba96516e6ap@chr14:47293487..47293493, -
1.87e-86FFCP PHASE1:Mm9::chr6:86745686..86745727,-#_c6d67655ae3e8e9acffeefba96516e6ap@chr6:86745686..86745727, -
1.87e-86FFCP PHASE1:Mm9::chr11:4689776..4689785,-#_c6d67655ae3e8e9acffeefba96516e6ap@chr11:4689776..4689785, -
1.87e-86FFCP PHASE2:Mm9::chr18:42158627..42158630,-#_c6d67655ae3e8e9acffeefba96516e6ap@chr18:42158627..42158630, -
1.87e-86FFCP PHASE2:Mm9::chr9:42207697..42207705,-#_c6d67655ae3e8e9acffeefba96516e6ap@chr9:42207697..42207705, -
1.87e-86FFCP PHASE1:Mm9::chr3:69811590..69811601,+#_c6d67655ae3e8e9acffeefba96516e6ap1@Otol1
1.87e-86FFCP PHASE2:Mm9::chr13:78257491..78257498,+#_c6d67655ae3e8e9acffeefba96516e6ap@chr13:78257491..78257498, +
1.87e-86FFCP PHASE1:Mm9::chr16:96494788..96494801,+#_c6d67655ae3e8e9acffeefba96516e6ap12@B3galt5
1.87e-86FFCP PHASE2:Mm9::chr7:88068153..88068160,-#_c6d67655ae3e8e9acffeefba96516e6ap10@Sec11a
1.87e-86FFCP PHASE1:Mm9::chr9:42207998..42208009,-#_c6d67655ae3e8e9acffeefba96516e6ap6@Tecta
1.87e-86FFCP PHASE1:Mm9::chr1:94627290..94627299,-#_c6d67655ae3e8e9acffeefba96516e6ap@chr1:94627290..94627299, -
1.87e-86FFCP PHASE2:Mm9::chr1:194818647..194818660,-#_c6d67655ae3e8e9acffeefba96516e6ap@chr1:194818647..194818660, -
1.87e-86FFCP PHASE2:Mm9::chr5:68423014..68423037,+#_c6d67655ae3e8e9acffeefba96516e6ap1@Grxcr1
1.87e-86FFCP PHASE1:Mm9::chr9:92087926..92087938,+#_c6d67655ae3e8e9acffeefba96516e6ap2@Plscr5
1.87e-86FFCP PHASE2:Mm9::chr3:154693281..154693317,-#_c6d67655ae3e8e9acffeefba96516e6ap@chr3:154693281..154693317, -
1.87e-86FFCP PHASE1:Mm9::chr1:172843847..172843880,-#_c6d67655ae3e8e9acffeefba96516e6ap@chr1:172843847..172843880, -
1.87e-86FFCP PHASE1:Mm9::chr9:42207397..42207408,-#_c6d67655ae3e8e9acffeefba96516e6ap@chr9:42207397..42207408, -
1.87e-86FFCP PHASE1:Mm9::chr1:78523144..78523177,+#_c6d67655ae3e8e9acffeefba96516e6ap@chr1:78523144..78523177, +
1.87e-86FFCP PHASE2:Mm9::chr10:80806047..80806059,-#_c6d67655ae3e8e9acffeefba96516e6ap4@Gipc3
1.87e-86FFCP PHASE1:Mm9::chr3:154459246..154459253,+#_c6d67655ae3e8e9acffeefba96516e6ap@chr3:154459246..154459253, +
1.87e-86FFCP PHASE2:Mm9::chr6:86746562..86746579,-#_c6d67655ae3e8e9acffeefba96516e6ap@chr6:86746562..86746579, -
1.87e-86FFCP PHASE2:Mm9::chr15:58480061..58480066,+#_c6d67655ae3e8e9acffeefba96516e6ap5@Fer1l6
1.87e-86FFCP PHASE1:Mm9::chr11:89702580..89702593,-#_c6d67655ae3e8e9acffeefba96516e6ap@chr11:89702580..89702593, -
1.87e-86FFCP PHASE1:Mm9::chr10:107156949..107156956,-#_c6d67655ae3e8e9acffeefba96516e6ap3@Ptprq
1.87e-86FFCP PHASE1:Mm9::chr2:53464168..53464175,+#_c6d67655ae3e8e9acffeefba96516e6ap@chr2:53464168..53464175, +
1.87e-86FFCP PHASE2:Mm9::chr1:172843813..172843834,-#_c6d67655ae3e8e9acffeefba96516e6ap@chr1:172843813..172843834, -
1.87e-86FFCP PHASE1:Mm9::chr6:29428397..29428407,-#_c6d67655ae3e8e9acffeefba96516e6ap@chr6:29428397..29428407, -
1.87e-86FFCP PHASE1:Mm9::chr10:97109753..97109764,+#_c6d67655ae3e8e9acffeefba96516e6ap3@Epyc
1.87e-86FFCP PHASE2:Mm9::chr4:130461150..130461185,+#_c6d67655ae3e8e9acffeefba96516e6ap@chr4:130461150..130461185, +

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0009617&oldid=1833424"