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|has_quality=
|has_quality=
|id=FF:11930-125I4
|id=FF:11930-125I4
|is_a=EFO:0002091;;FF:0000002;;FF:0000087;;FF:0000210
|is_a=EFO:0002091;;FF:0000087
|is_obsolete=
|name=Mallassez-derived cells, donor3
|name=Mallassez-derived cells, donor3
|namespace=
|namespace=
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|sample_tissue=ANATOMICAL SYSTEM
|sample_tissue=ANATOMICAL SYSTEM
|top_motifs=TP53:2.44026533975;TBX4,5:1.85872842141;TEF:1.44256695294;SNAI1..3:1.43341712795;ZEB1:1.427377201;ADNP_IRX_SIX_ZHX:1.26494775298;NKX3-2:1.22284172049;VSX1,2:1.18850955778;TEAD1:1.08442284013;NKX2-3_NKX2-5:1.07362316528;ELK1,4_GABP{A,B1}:0.931775696211;TBP:0.888921974862;NFIL3:0.856148212969;NANOG:0.85494274163;ONECUT1,2:0.782673102481;PPARG:0.774815466784;POU1F1:0.763918642004;MYOD1:0.744569274975;PAX4:0.743420472233;ALX1:0.730330342002;IRF7:0.669702856112;HSF1,2:0.668193312536;NFIX:0.630233157048;NKX2-2,8:0.629484637191;POU3F1..4:0.622159544972;FOS_FOS{B,L1}_JUN{B,D}:0.605094934049;XCPE1{core}:0.590099514743;BACH2:0.542853622822;TFCP2:0.518943019087;ZNF148:0.467031453;SOX17:0.430590017117;GFI1B:0.425766510723;HAND1,2:0.403280294415;ZNF238:0.387251768684;FOXM1:0.386711660146;FOSL2:0.368157339118;LMO2:0.36107015832;SP1:0.358262368491;NR1H4:0.357242358411;ZIC1..3:0.320354123815;NRF1:0.295738719753;ARID5B:0.277776978234;TLX2:0.251570489438;HIF1A:0.220097545636;ZNF143:0.215155661752;IKZF1:0.211404443321;PDX1:0.209911981061;GCM1,2:0.181248363249;MTF1:0.159039680739;RBPJ:0.15327277482;FOXN1:0.144836151272;KLF4:0.142809848423;GLI1..3:0.13600552642;POU6F1:0.0730049537197;TLX1..3_NFIC{dimer}:0.0681347926945;HLF:0.0680063999992;ELF1,2,4:0.0678905720823;SOX2:0.0633991376734;HES1:0.0509549938482;ALX4:0.0450974752031;MAZ:0.0441474999394;PAX5:0.0408593003353;NKX2-1,4:0.0406744019473;CDC5L:0.0376988113108;NKX3-1:0.0351185071604;NFE2:0.0226031306511;NFKB1_REL_RELA:0.0221228764937;LEF1_TCF7_TCF7L1,2:0.0198305573984;GZF1:0.0142454766737;CEBPA,B_DDIT3:0.0132739866491;NFE2L1:0.00962520460139;PAX1,9:0.00914400427241;SPZ1:-0.00110885616761;MAFB:-0.01102750816;HMX1:-0.0150363106595;STAT5{A,B}:-0.0221021229372;HMGA1,2:-0.028799681353;EVI1:-0.0335170505939;FOXO1,3,4:-0.0454213280001;GFI1:-0.0482145017234;HOX{A4,D4}:-0.0540774169386;YY1:-0.0568774470273;TFAP2{A,C}:-0.0570621791798;JUN:-0.0626528439006;UFEwm:-0.0693464304815;SOX{8,9,10}:-0.0712427750042;E2F1..5:-0.0858920317782;NFATC1..3:-0.106805650457;SMAD1..7,9:-0.127732274672;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.128208823458;ZBTB6:-0.128953603794;OCT4_SOX2{dimer}:-0.129693757733;HNF1A:-0.137107249409;IRF1,2:-0.137387573041;REST:-0.164129292369;HOX{A5,B5}:-0.16833412011;PAX2:-0.187061426918;CRX:-0.188550748325;LHX3,4:-0.21148590894;bHLH_family:-0.212999890933;NFY{A,B,C}:-0.222455381728;ATF4:-0.223014000387;NHLH1,2:-0.232367032646;SRF:-0.232866735881;FOXA2:-0.237173456935;EN1,2:-0.244398611449;MYBL2:-0.25497416809;ETS1,2:-0.25894190383;PITX1..3:-0.275421020522;PAX6:-0.276503722148;T:-0.279299477673;NR5A1,2:-0.280927474081;EBF1:-0.285937219487;ATF5_CREB3:-0.291436275684;RFX2..5_RFXANK_RFXAP:-0.303067496257;MYB:-0.309127831895;STAT1,3:-0.338464846598;RUNX1..3:-0.344628183838;NR6A1:-0.35722991236;PAX8:-0.364499315743;SPI1:-0.390812465578;TFDP1:-0.394424563083;GATA6:-0.399561078772;POU2F1..3:-0.399670794218;MTE{core}:-0.402593499116;ATF2:-0.409696910917;SPIB:-0.409778096864;PRRX1,2:-0.412753271991;GTF2I:-0.415077393629;EP300:-0.424491885497;AHR_ARNT_ARNT2:-0.436409845565;FOXQ1:-0.438358655979;TFAP4:-0.460464439772;MYFfamily:-0.464652096543;HNF4A_NR2F1,2:-0.476896349311;AR:-0.481338922535;GTF2A1,2:-0.482217946746;FOX{F1,F2,J1}:-0.486230866416;RFX1:-0.494830718706;HOX{A6,A7,B6,B7}:-0.499480881936;FOXL1:-0.537695977475;NR3C1:-0.548443970865;NFE2L2:-0.551688507641;PRDM1:-0.557166420521;FOX{I1,J2}:-0.567703361714;FOXP3:-0.568889706874;CDX1,2,4:-0.577308709212;CUX2:-0.581909887975;CREB1:-0.592696512059;ZBTB16:-0.609361009176;DBP:-0.610259910728;MEF2{A,B,C,D}:-0.625511794085;HOXA9_MEIS1:-0.638404668852;MED-1{core}:-0.645351974562;TOPORS:-0.655303900585;ZNF423:-0.665135792542;ZFP161:-0.665458482978;RXR{A,B,G}:-0.673432646162;ZNF384:-0.681870238912;STAT2,4,6:-0.695513796676;POU5F1:-0.73816703281;NKX6-1,2:-0.787181331768;HIC1:-0.787841094127;TAL1_TCF{3,4,12}:-0.834695106263;PBX1:-0.877947906874;RREB1:-0.88704865113;MZF1:-0.908916261883;ATF6:-0.912636249011;TFAP2B:-0.913569410323;SREBF1,2:-0.937788574825;GATA4:-0.949265697507;TGIF1:-0.956238182212;FOX{D1,D2}:-0.96553079287;RORA:-0.966300981884;BPTF:-1.01562094221;AIRE:-1.02325633789;ESRRA:-1.03098982849;PAX3,7:-1.03192353753;DMAP1_NCOR{1,2}_SMARC:-1.03363373894;NANOG{mouse}:-1.04249275303;RXRA_VDR{dimer}:-1.12141898709;HBP1_HMGB_SSRP1_UBTF:-1.15562701282;EGR1..3:-1.17063464438;SOX5:-1.1882751349;FOXP1:-1.18883633455;PATZ1:-1.26178542477;ESR1:-1.29973423698;XBP1:-1.31059357344;FOXD3:-1.33914546843;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.42651801706;IKZF2:-1.48568867179;BREu{core}:-1.60191646019
|top_motifs=TP53:2.44026533975;TBX4,5:1.85872842141;TEF:1.44256695294;SNAI1..3:1.43341712795;ZEB1:1.427377201;ADNP_IRX_SIX_ZHX:1.26494775298;NKX3-2:1.22284172049;VSX1,2:1.18850955778;TEAD1:1.08442284013;NKX2-3_NKX2-5:1.07362316528;ELK1,4_GABP{A,B1}:0.931775696211;TBP:0.888921974862;NFIL3:0.856148212969;NANOG:0.85494274163;ONECUT1,2:0.782673102481;PPARG:0.774815466784;POU1F1:0.763918642004;MYOD1:0.744569274975;PAX4:0.743420472233;ALX1:0.730330342002;IRF7:0.669702856112;HSF1,2:0.668193312536;NFIX:0.630233157048;NKX2-2,8:0.629484637191;POU3F1..4:0.622159544972;FOS_FOS{B,L1}_JUN{B,D}:0.605094934049;XCPE1{core}:0.590099514743;BACH2:0.542853622822;TFCP2:0.518943019087;ZNF148:0.467031453;SOX17:0.430590017117;GFI1B:0.425766510723;HAND1,2:0.403280294415;ZNF238:0.387251768684;FOXM1:0.386711660146;FOSL2:0.368157339118;LMO2:0.36107015832;SP1:0.358262368491;NR1H4:0.357242358411;ZIC1..3:0.320354123815;NRF1:0.295738719753;ARID5B:0.277776978234;TLX2:0.251570489438;HIF1A:0.220097545636;ZNF143:0.215155661752;IKZF1:0.211404443321;PDX1:0.209911981061;GCM1,2:0.181248363249;MTF1:0.159039680739;RBPJ:0.15327277482;FOXN1:0.144836151272;KLF4:0.142809848423;GLI1..3:0.13600552642;POU6F1:0.0730049537197;TLX1..3_NFIC{dimer}:0.0681347926945;HLF:0.0680063999992;ELF1,2,4:0.0678905720823;SOX2:0.0633991376734;HES1:0.0509549938482;ALX4:0.0450974752031;MAZ:0.0441474999394;PAX5:0.0408593003353;NKX2-1,4:0.0406744019473;CDC5L:0.0376988113108;NKX3-1:0.0351185071604;NFE2:0.0226031306511;NFKB1_REL_RELA:0.0221228764937;LEF1_TCF7_TCF7L1,2:0.0198305573984;GZF1:0.0142454766737;CEBPA,B_DDIT3:0.0132739866491;NFE2L1:0.00962520460139;PAX1,9:0.00914400427241;SPZ1:-0.00110885616761;MAFB:-0.01102750816;HMX1:-0.0150363106595;STAT5{A,B}:-0.0221021229372;HMGA1,2:-0.028799681353;EVI1:-0.0335170505939;FOXO1,3,4:-0.0454213280001;GFI1:-0.0482145017234;HOX{A4,D4}:-0.0540774169386;YY1:-0.0568774470273;TFAP2{A,C}:-0.0570621791798;JUN:-0.0626528439006;UFEwm:-0.0693464304815;SOX{8,9,10}:-0.0712427750042;E2F1..5:-0.0858920317782;NFATC1..3:-0.106805650457;SMAD1..7,9:-0.127732274672;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.128208823458;ZBTB6:-0.128953603794;OCT4_SOX2{dimer}:-0.129693757733;HNF1A:-0.137107249409;IRF1,2:-0.137387573041;REST:-0.164129292369;HOX{A5,B5}:-0.16833412011;PAX2:-0.187061426918;CRX:-0.188550748325;LHX3,4:-0.21148590894;bHLH_family:-0.212999890933;NFY{A,B,C}:-0.222455381728;ATF4:-0.223014000387;NHLH1,2:-0.232367032646;SRF:-0.232866735881;FOXA2:-0.237173456935;EN1,2:-0.244398611449;MYBL2:-0.25497416809;ETS1,2:-0.25894190383;PITX1..3:-0.275421020522;PAX6:-0.276503722148;T:-0.279299477673;NR5A1,2:-0.280927474081;EBF1:-0.285937219487;ATF5_CREB3:-0.291436275684;RFX2..5_RFXANK_RFXAP:-0.303067496257;MYB:-0.309127831895;STAT1,3:-0.338464846598;RUNX1..3:-0.344628183838;NR6A1:-0.35722991236;PAX8:-0.364499315743;SPI1:-0.390812465578;TFDP1:-0.394424563083;GATA6:-0.399561078772;POU2F1..3:-0.399670794218;MTE{core}:-0.402593499116;ATF2:-0.409696910917;SPIB:-0.409778096864;PRRX1,2:-0.412753271991;GTF2I:-0.415077393629;EP300:-0.424491885497;AHR_ARNT_ARNT2:-0.436409845565;FOXQ1:-0.438358655979;TFAP4:-0.460464439772;MYFfamily:-0.464652096543;HNF4A_NR2F1,2:-0.476896349311;AR:-0.481338922535;GTF2A1,2:-0.482217946746;FOX{F1,F2,J1}:-0.486230866416;RFX1:-0.494830718706;HOX{A6,A7,B6,B7}:-0.499480881936;FOXL1:-0.537695977475;NR3C1:-0.548443970865;NFE2L2:-0.551688507641;PRDM1:-0.557166420521;FOX{I1,J2}:-0.567703361714;FOXP3:-0.568889706874;CDX1,2,4:-0.577308709212;CUX2:-0.581909887975;CREB1:-0.592696512059;ZBTB16:-0.609361009176;DBP:-0.610259910728;MEF2{A,B,C,D}:-0.625511794085;HOXA9_MEIS1:-0.638404668852;MED-1{core}:-0.645351974562;TOPORS:-0.655303900585;ZNF423:-0.665135792542;ZFP161:-0.665458482978;RXR{A,B,G}:-0.673432646162;ZNF384:-0.681870238912;STAT2,4,6:-0.695513796676;POU5F1:-0.73816703281;NKX6-1,2:-0.787181331768;HIC1:-0.787841094127;TAL1_TCF{3,4,12}:-0.834695106263;PBX1:-0.877947906874;RREB1:-0.88704865113;MZF1:-0.908916261883;ATF6:-0.912636249011;TFAP2B:-0.913569410323;SREBF1,2:-0.937788574825;GATA4:-0.949265697507;TGIF1:-0.956238182212;FOX{D1,D2}:-0.96553079287;RORA:-0.966300981884;BPTF:-1.01562094221;AIRE:-1.02325633789;ESRRA:-1.03098982849;PAX3,7:-1.03192353753;DMAP1_NCOR{1,2}_SMARC:-1.03363373894;NANOG{mouse}:-1.04249275303;RXRA_VDR{dimer}:-1.12141898709;HBP1_HMGB_SSRP1_UBTF:-1.15562701282;EGR1..3:-1.17063464438;SOX5:-1.1882751349;FOXP1:-1.18883633455;PATZ1:-1.26178542477;ESR1:-1.29973423698;XBP1:-1.31059357344;FOXD3:-1.33914546843;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.42651801706;IKZF2:-1.48568867179;BREu{core}:-1.60191646019
|xref=
}}
}}

Revision as of 23:37, 27 June 2012


Name:Mallassez-derived cells, donor3
Species:
Library ID:{{{library_id}}}
Sample type:{{{sample_category}}}
Additional information
Sample information
strainNA
tissueANATOMICAL SYSTEM
dev stageNA
sexmale
age18
cell typeepithelial cell rests of Malassez
cell lineNA
companyNA
collaborationMitsuhiro Ohshima (Nihon University School of Dentistry)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberMZH7
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002321 (embryonic cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000221 (ectodermal cell)
0002159 (general ecto-epithelial cell)
0000255 (eukaryotic cell)
0002077 (ecto-epithelial cell)
0002166 (epithelial cell of Malassez)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0002100 (trunk)
0000033 (head)
0000926 (mesoderm)
0000479 (tissue)
0000062 (organ)
0000475 (organism subdivision)
0004765 (skeletal element)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000480 (anatomical group)
0000923 (germ layer)
0002050 (embryonic structure)
0005423 (developing anatomical structure)
0000481 (multi-tissue structure)
0000467 (anatomical system)
0001062 (anatomical entity)
0005291 (embryonic tissue)
0000075 (subdivision of skeletal system)
0001708 (jaw skeleton)
0003104 (mesenchyme)
0005256 (trunk mesenchyme)
0006598 (presumptive structure)
0002532 (epiblast (generic))
0002329 (somite)
0000153 (anterior region of body)
0007811 (craniocervical region)
0002204 (musculoskeletal system)
0001434 (skeletal system)
0003129 (skull)
0003077 (paraxial mesoderm)
0009142 (entire embryonic mesenchyme)
0004288 (skeleton)
0006603 (presumptive mesoderm)
0003089 (sclerotome)
0003059 (presomitic mesoderm)
0007282 (presumptive segmental plate)
0009618 (trunk paraxial mesoderm)
0007285 (presumptive paraxial mesoderm)

FF: FANTOM5
NA

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA

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