FF:10817-111B7: Difference between revisions

Revision as of 13:45, 29 June 2012

Name:	epitheloid carcinoma cell line: HelaS3 ENCODE, biol_rep3
Species:
Library ID:	{{{library_id}}}
Sample type:	{{{sample_category}}}

Additional information

Sample information

strain	NA
tissue	cervix
dev stage	NA
sex	female
age	NA
cell type	epithelial cell
cell line	HelaS3
company	NA
collaboration	Carrie Davis (Cold spring Harbor Laboratories)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0011472 human epitheloid carcinoma cell line: HelaS3 ENCODE sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000988 (hematopoietic cell)
0000839 (myeloid lineage restricted progenitor cell)
0000548 (animal cell)
0002194 (monopoietic cell)
0000034 (stem cell)
0002032 (hematopoietic oligopotent progenitor cell)
0000763 (myeloid cell)
0002320 (connective tissue cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000219 (motile cell)
0000134 (mesenchymal cell)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0000255 (eukaryotic cell)
0002031 (hematopoietic lineage restricted progenitor cell)
0000576 (monocyte)
0000235 (macrophage)
0000037 (hematopoietic stem cell)
0000860 (classical monocyte)
0000566 (angioblastic mesenchymal cell)
0000049 (common myeloid progenitor)
0000557 (granulocyte monocyte progenitor cell)
0000837 (hematopoietic multipotent progenitor cell)
0002009 (macrophage dendritic cell progenitor)
0000040 (monoblast)
0000559 (promonocyte)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
305 (carcinoma)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0002371 (bone marrow)
0001474 (bone element)
0002384 (connective tissue)
0000926 (mesoderm)
0000479 (tissue)
0000062 (organ)
0004765 (skeletal element)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000480 (anatomical group)
0000923 (germ layer)
0002050 (embryonic structure)
0005423 (developing anatomical structure)
0000467 (anatomical system)
0001062 (anatomical entity)
0005291 (embryonic tissue)
0006598 (presumptive structure)
0002532 (epiblast (generic))
0002204 (musculoskeletal system)
0001434 (skeletal system)
0002390 (hematopoietic system)
0002193 (hemolymphoid system)
0002405 (immune system)
0003081 (lateral plate mesoderm)
0006603 (presumptive mesoderm)
0003061 (blood island)

FF: FANTOM5
NA

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
NA

@@ Line 6: / Line 6: @@
 |created_by=
 |creation_date=
+|datafreeze_phase=1
 |def=
 |expression_enrichment_score=chr6:10415484..10415508,-!p3@TFAP2A!1.65!43.19!TFAP2A;;chr5:134369905..134369972,-!p1@PITX1!1.47!42.70!PITX1;;chr6:10412600..10412637,-!p1@TFAP2A!1.46!45.41!TFAP2A;;chr6:10415276..10415341,-!p2@TFAP2A!1.45!33.17!TFAP2A;;chr12:85673868..85673881,+!p2@ALX1!1.43!25.78!ALX1;;chr17:8027418..8027432,-!p1@HES7!1.36!22.17!HES7;;chr13:73633131..73633149,+!p1@KLF5!1.35!221.88!KLF5;;chr5:134369879..134369898,-!p2@PITX1!1.34!20.94!PITX1;;chr2:45236540..45236577,-!p1@SIX2!1.30!18.97!SIX2;;chr18:55102628..55102646,+!p2@ONECUT2!1.30!18.97!ONECUT2;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.29!18.72!ZBED1;;chr18:55102598..55102623,+!p1@ONECUT2!1.29!18.64!ONECUT2;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!1.24!16.34!SEBOX;;chr12:85673977..85674015,+!p1@ALX1!1.23!15.93!ALX1;;chr3:12330560..12330579,+!p1@PPARG!1.22!18.07!PPARG;;chr1:201979743..201979762,+!p1@ELF3!1.20!14.95!ELF3;;chrX:131624056..131624069,-!p2@MBNL3!1.16!18.48!MBNL3;;chr3:128206762..128206781,-!p2@GATA2!1.15!81.46!GATA2;;chr10:35484053..35484076,+!p1@CREM!1.15!33.01!CREM;;chr3:128207349..128207386,-!p3@GATA2!1.15!13.06!GATA2;;chr6:1312325..1312340,+!p1@FOXQ1!1.13!20.28!FOXQ1;;chr20:55204351..55204377,+!p1@TFAP2C!1.11!15.27!TFAP2C;;chr17:46682321..46682362,-!p1@HOXB6!1.11!11.99!HOXB6;;chr1:201979703..201979721,+!p2@ELF3!1.10!11.50!ELF3;;chr6:1389789..1389821,+!p1@FOXF2!1.09!15.60!FOXF2;;chr5:170736243..170736279,+!p1@TLX3!1.09!11.41!TLX3;;chr6:126240380..126240430,+!p2@NCOA7!1.08!29.07!NCOA7;;chr15:96875657..96875760,+!p14@NR2F2!1.06!17.49!NR2F2;;chr12:54378923..54378966,+!p1@HOXC10!1.06!10.43!HOXC10;;chr8:128748308..128748324,+!p2@MYC!1.05!287.08!MYC;;chr8:10588010..10588030,-!p1@SOX7!1.04!9.94!SOX7;;chr17:46687959..46688007,-!p2@HOXB7!1.03!13.38!HOXB7;;chr6:10412392..10412409,-!p4@TFAP2A!1.03!11.17!TFAP2A;;chr3:169381420..169381535,-!p1@MECOM!0.97!9.77!MECOM;;chr17:26697304..26697335,-!p1@SEBOX,p1@VTN!0.97!8.38!SEBOX;;chr12:54380404..54380433,+!p3@HOXC10!0.97!8.29!HOXC10;;chr6:126240442..126240459,+!p4@NCOA7!0.95!10.10!NCOA7;;chr12:2986275..2986363,-!p1@FOXM1!0.93!77.93!FOXM1;;chr7:73038839..73038862,-!p1@MLXIPL!0.92!7.31!MLXIPL;;chr12:85674018..85674039,+!p3@ALX1!0.91!7.06!ALX1;;chr2:46524897..46524911,+!p2@EPAS1!0.90!19.95!EPAS1;;chr17:46688334..46688385,-!p1@HOXB7!0.90!10.18!HOXB7;;chr1:23857325..23857416,-!p2@E2F2!0.89!7.97!E2F2;;chr3:114790132..114790174,-!p18@ZBTB20!0.89!6.82!ZBTB20;;chr9:126774018..126774055,+!p1@LHX2!0.89!6.73!LHX2;;chr12:54366894..54366922,+!p2@HOXC11!0.88!6.57!HOXC11;;chrX:131623044..131623089,-!p1@MBNL3!0.87!27.76!MBNL3;;chr1:23857698..23857733,-!p1@E2F2!0.87!12.24!E2F2;;chr7:27224842..27224872,-!p1@HOXA11!0.86!6.32!HOXA11;;chr3:69915385..69915438,+!p3@MITF!0.86!6.32!MITF;;chr7:27196267..27196311,-!p1@HOXA7!0.86!6.24!HOXA7;;chr17:41277372..41277418,-!p1@BRCA1!0.85!23.32!BRCA1;;chr11:31832658..31832681,-!p1@PAX6!0.85!6.16!PAX6;;chr12:54332608..54332636,+!p1@HOXC13!0.85!6.16!HOXC13;;chr6:1389989..1390019,+!p2@FOXF2!0.84!5.91!FOXF2;;chr6:20402102..20402152,+!p1@E2F3!0.83!25.05!E2F3;;chr8:128747661..128747703,+!p6@MYC!0.83!8.05!MYC;;chr20:42295745..42295765,+!p1@MYBL2!0.82!99.69!MYBL2;;chr6:10412576..10412599,-!p5@TFAP2A!0.81!5.50!TFAP2A;;chr3:32023232..32023273,+!p1@ZNF860!0.80!7.80!ZNF860;;chr8:55370487..55370503,+!p1@SOX17!0.80!5.34!SOX17;;chr12:54379136..54379150,+!p4@HOXC5!0.78!5.01!HOXC5;;chr12:54393880..54393962,+!p1@HOXC9!0.78!5.01!HOXC9;;chr20:42295713..42295738,+!p2@MYBL2!0.77!31.70!MYBL2;;chr13:100623375..100623425,-!p1@ZIC5!0.77!4.93!ZIC5;;chr1:151804244..151804310,-!p1@RORC!0.77!4.84!RORC;;chr20:32274179..32274213,-!p1@E2F1!0.76!34.32!E2F1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.76!4.76!HOXC5;;chr1:45805872..45805900,+!p2@TOE1!0.74!11.82!TOE1;;chr20:32274150..32274166,-!p2@E2F1!0.74!8.87!E2F1;;chr12:54366975..54367001,+!p1@HOXC11!0.74!4.52!HOXC11;;chrX:131623026..131623039,-!p5@MBNL3!0.74!4.43!MBNL3;;chr5:134369643..134369675,-!p4@PITX1!0.74!4.43!PITX1;;chr6:126240356..126240379,+!p7@NCOA7!0.73!5.42!NCOA7;;chr12:115121962..115121987,-!p1@TBX3!0.72!39.83!TBX3;;chr15:66994663..66994680,+!p1@SMAD6!0.72!11.00!SMAD6;;chr17:46687935..46687950,-!p3@HOXB7!0.72!4.27!HOXB7;;chr1:23885981..23886002,-!p1@ID3!0.71!815.16!ID3;;chr1:117602932..117602973,+!p1@TTF2!0.71!17.33!TTF2;;chr16:29818199..29818216,+!p11@MAZ!0.71!7.14!MAZ;;chr2:63277948..63277974,+!p1@OTX1!0.71!4.19!OTX1;;chr18:45663490..45663528,-!p2@ZBTB7C!0.71!4.11!ZBTB7C;;chr5:92918919..92918942,+!p1@NR2F1!0.69!19.54!NR2F1;;chr9:99180617..99180658,-!p1@ZNF367!0.69!9.28!ZNF367;;chr12:54332652..54332671,+!p2@HOXC13!0.69!3.94!HOXC13;;chr3:138665937..138665968,-!p1@FOXL2!0.69!3.86!FOXL2;;chr13:73636516..73636532,+!p3@KLF5!0.68!4.43!KLF5;;chr21:38071430..38071456,+!p1@SIM2!0.68!3.78!SIM2;;chr11:47279504..47279563,+!p1@NR1H3!0.67!9.28!NR1H3;;chr20:6748325..6748352,+!p1@BMP2!0.67!5.58!BMP2;;chr16:54320158..54320200,-!p5@IRX3!0.67!5.58!IRX3;;chr1:44513995..44514031,+!p1@KLF17!0.67!3.70!KLF17;;chr12:52445218..52445237,+!p1@NR4A1!0.66!53.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OLA3;;chr15:42743341..42743377,-!p3@ZFP106!0.15!1.31!ZFP106;;chr19:12551785..12551823,-!p1@ZNF443!0.15!1.23!ZNF443;;chr12:6798692..6798723,-!p5@ZNF384!0.15!1.23!ZNF384;;chr19:47922750..47922795,-!p1@MEIS3!0.15!1.23!MEIS3;;chr1:8763510..8763538,-!p15@RERE!0.15!1.23!RERE;;chr14:105886300..105886316,+!p2@MTA1!0.15!1.15!MTA1;;chr6:43139248..43139261,+!p4@SRF!0.15!1.07!SRF;;chrX:131623932..131623964,-!p7@MBNL3!0.15!0.99!MBNL3;;chr19:50435736..50435781,+!p3@ATF5!0.15!0.90!ATF5;;chr1:33004996..33005017,+!p3@ZBTB8A!0.15!0.90!ZBTB8A;;chr14:105886290..105886299,+!p5@MTA1!0.15!0.82!MTA1;;chrX:47863427..47863440,-!p2@ZNF182!0.15!0.82!ZNF182;;chr1:42671469..42671496,-!p6@FOXJ3!0.15!0.74!FOXJ3;;chr14:105927191..105927216,+!p6@MTA1!0.15!0.74!MTA1;;chr17:41623075..41623101,-!p9@ETV4!0.15!0.66!ETV4;;chr1:47903709..47903764,+!p1@BC169308!0.15!0.57!FOXD2;;chr19:4153613..4153652,+!p1@CREB3L3!0.15!0.41!CREB3L3;;chr1:158985457..158985468,+!p12@IFI16!0.15!0.41!IFI16;;chr1:23886329..23886336,-!p3@ID3!0.15!0.41!ID3;;chr1:61548333..61548342,+!p15@NFIA!0.15!0.41!NFIA;;chr1:8763573..8763584,-!p30@RERE!0.15!0.41!RERE;;chr11:31832581..31832601,-!p7@PAX6!0.15!0.41!PAX6;;chr12:115122303..115122314,-!p6@TBX3!0.15!0.41!TBX3;;chr13:73636334..73636351,+!p6@KLF5!0.15!0.41!KLF5;;chr9:14314127..14314129,-!p17@NFIB!0.15!0.41!NFIB;;chrX:107018836..107018862,-!p8@TSC22D3!0.15!0.41!TSC22D3;;chr9:126774058..126774081,+!p3@LHX2!0.15!0.41!LHX2;;chr9:14314476..14314487,-!p9@NFIB!0.15!0.41!NFIB;;chrX:47863414..47863425,-!p3@ZNF182!0.15!0.41!ZNF182;;chr9:32551047..32551066,-!p5@TOPORS!0.15!0.41!TOPORS;;chr2:200323212..200323223,-!p8@SATB2!0.15!0.41!SATB2;;chr3:138665921..138665932,-!p6@FOXL2!0.15!0.41!FOXL2;;chr4:146402827..146402839,+!p10@SMAD1!0.15!0.41!SMAD1;;chr15:67418099..67418118,+!p16@SMAD3!0.15!0.41!SMAD3;;chr16:67881534..67881549,-!p4@CENPT!0.15!0.41!CENPT;;chr16:86600458..86600461,+!p3@FOXC2!0.15!0.41!FOXC2;;chr17:36871943..36871947,+!p8@MLLT6!0.15!0.41!MLLT6;;chr17:45928521..45928539,-!p1@SP6!0.15!0.41!SP6;;chr17:48046543..48046575,+!p2@DLX4!0.15!0.41!DLX4;;chr17:79881433..79881452,-!p6@MAFG!0.15!0.41!MAFG;;chr18:19749353..19749367,+!p4@GATA6!0.15!0.41!GATA6;;chr19:2867298..2867317,+!p2@ZNF556!0.15!0.41!ZNF556;;chr19:3381943..3381961,+!p8@NFIC!0.15!0.41!NFIC;;chr6:1389871..1389876,+!p4@FOXF2!0.15!0.41!FOXF2;;chr6:1612284..1612295,+!p10@FOXC1!0.15!0.41!FOXC1;;chr6:20402608..20402629,+!p13@E2F3!0.15!0.41!E2F3;;chr7:138665870..138665905,-!p4@KIAA1549!0.15!0.41!KIAA1549;;chr7:138666186..138666213,-!p2@KIAA1549!0.15!0.41!KIAA1549;;chr7:27183291..27183324,-!p1@HOXA5!0.15!0.41!HOXA5;;chr7:73038889..73038905,-!p3@MLXIPL!0.15!0.41!MLXIPL;;chr8:80680061..80680075,-!p4@HEY1!0.15!0.41!HEY1;;chr8:86089472..86089483,+!p9@E2F5!0.15!0.41!E2F5;;chr19:50432453..50432468,+!p1@ATF5!0.14!70.46!ATF5;;chr15:35280439..35280503,-!p1@ZNF770!0.14!43.27!ZNF770;;chr14:105886150..105886224,+!p1@MTA1!0.14!42.04!MTA1;;chr17:38804061..38804112,-!p1@SMARCE1!0.14!32.44!SMARCE1;;chr11:3400340..3400422,-!p1@ZNF195!0.14!18.97!ZNF195;;chr4:87856129..87856186,+!p1@AFF1!0.14!16.67!AFF1;;chr17:40428359..40428462,-!p1@STAT5B!0.14!15.27!STAT5B;;chr8:145159357..145159373,+!p3@MAF1!0.14!15.03!MAF1;;chr1:53019059..53019176,-!p2@ZCCHC11!0.14!10.43!ZCCHC11;;chr11:67007477..67007493,+!p2@KDM2A!0.14!10.02!KDM2A;;

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Revision as of 13:45, 29 June 2012

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0