Coexpression cluster:C3441: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 5: | Line 5: | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_uberon=UBERON:0002204!1.55e-20!167;UBERON:0000926!2.00e-16!448;UBERON:0004120!2.00e-16!448;UBERON:0006603!2.00e-16!448;UBERON:0003081!3.51e-12!216;UBERON:0002371!6.69e-12!80;UBERON:0004765!1.71e-11!101;UBERON:0001434!1.71e-11!101;UBERON:0000468!3.55e-11!659;UBERON:0002384!7.53e-11!375;UBERON:0000467!1.11e-10!625;UBERON:0001474!1.13e-10!86;UBERON:0000914!1.15e-10!83;UBERON:0002329!1.15e-10!83;UBERON:0003077!1.15e-10!83;UBERON:0003059!1.15e-10!83;UBERON:0007282!1.15e-10!83;UBERON:0009618!1.15e-10!83;UBERON:0007285!1.15e-10!83;UBERON:0000480!1.68e-10!626;UBERON:0004290!1.45e-09!70;UBERON:0000486!1.48e-09!82;UBERON:0002405!1.83e-09!115;UBERON:0001134!3.51e-09!61;UBERON:0002036!3.51e-09!61;UBERON:0003082!3.51e-09!61;UBERON:0005256!5.66e-09!143;UBERON:0002390!2.67e-08!102;UBERON:0003061!2.67e-08!102;UBERON:0002193!3.19e-08!112;UBERON:0002385!3.27e-08!63;UBERON:0001015!3.27e-08!63;UBERON:0000383!3.27e-08!63;UBERON:0000923!2.74e-07!604;UBERON:0005291!2.74e-07!604;UBERON:0006598!2.74e-07!604;UBERON:0002532!2.74e-07!604;UBERON:0002050!3.52e-07!605;UBERON:0005423!3.52e-07!605 | |ontology_enrichment_uberon=UBERON:0002204!1.55e-20!167;UBERON:0000926!2.00e-16!448;UBERON:0004120!2.00e-16!448;UBERON:0006603!2.00e-16!448;UBERON:0003081!3.51e-12!216;UBERON:0002371!6.69e-12!80;UBERON:0004765!1.71e-11!101;UBERON:0001434!1.71e-11!101;UBERON:0000468!3.55e-11!659;UBERON:0002384!7.53e-11!375;UBERON:0000467!1.11e-10!625;UBERON:0001474!1.13e-10!86;UBERON:0000914!1.15e-10!83;UBERON:0002329!1.15e-10!83;UBERON:0003077!1.15e-10!83;UBERON:0003059!1.15e-10!83;UBERON:0007282!1.15e-10!83;UBERON:0009618!1.15e-10!83;UBERON:0007285!1.15e-10!83;UBERON:0000480!1.68e-10!626;UBERON:0004290!1.45e-09!70;UBERON:0000486!1.48e-09!82;UBERON:0002405!1.83e-09!115;UBERON:0001134!3.51e-09!61;UBERON:0002036!3.51e-09!61;UBERON:0003082!3.51e-09!61;UBERON:0005256!5.66e-09!143;UBERON:0002390!2.67e-08!102;UBERON:0003061!2.67e-08!102;UBERON:0002193!3.19e-08!112;UBERON:0002385!3.27e-08!63;UBERON:0001015!3.27e-08!63;UBERON:0000383!3.27e-08!63;UBERON:0000923!2.74e-07!604;UBERON:0005291!2.74e-07!604;UBERON:0006598!2.74e-07!604;UBERON:0002532!2.74e-07!604;UBERON:0002050!3.52e-07!605;UBERON:0005423!3.52e-07!605 | ||
|tf_chipseq_enrich=ATF3#467;3:22.4631745260087:8.81932387510763e-05:0.00129474468118128!BHLHE40#8553;3:44.8718135469774:1.10603738662898e-05:0.00028423582338126!CCNT2#905;3:6.33620157696263:0.00393075003576489:0.0189635810691634!CTCF#10664;3:5.36025637307503:0.006492509252767:0.0278880963169258!E2F1#1869;3:4.90738921487932:0.00846098534723939:0.0324384878925272!E2F6#1876;3:5.01715573169739:0.0079176980688633:0.032128233297615!EGR1#1958;3:4.98817909481014:0.00805648813738344:0.0319782443212294!ELF1#1997;3:4.25809795880754:0.0129517987505461:0.0461080856838901!ETS1#2113;3:9.72876092220234:0.00108584009258484:0.0076089676214082!FOS#2353;3:8.9979553088944:0.00137249927241713:0.00896170375192076!FOSL2#2355;3:16.9302006045617:0.000206016205317162:0.00242599238551348!GATA3#2625;3:27.236516357206:4.94721007899563e-05:0.000850085017177072!GTF2B#2959;3:31.9438299343242:3.06634405746243e-05:0.000626826985745389!GTF2F1#2962;3:12.7396608767577:0.000483552504743859:0.00433193858663098!HDAC2#3066;3:13.4156202366263:0.000414076139985721:0.00390621425200693!HMGN3#9324;3:8.17854772335059:0.00182776694216421:0.0108528143540104!IRF1#3659;3:7.6371637535639:0.00224469274729724:0.0127826317249169!MAX#4149;3:6.45255550900712:0.00372191383426551:0.0186138466186302!MXI1#4601;3:9.9615716287593:0.00101147054125902:0.00719157000875151!MYC#4609;3:5.2222818716094:0.00702084375574015:0.0293864179627183!NFKB1#4790;3:5.48806342419384:0.00604938181565543:0.0269099321682101!NFYA#4800;3:18.4255806998305:0.000159813550781416:0.00199221382550255!NFYB#4801;3:16.7597932535365:0.000212364992329618:0.00245290725878268!PAX5#5079;3:6.66956553117783:0.00337029099967726:0.0172611721123624!PBX3#5090;3:21.9145126867441:9.49854535978121e-05:0.00136378688318695!POU2F2#5452;3:9.10612405774252:0.00132416519268213:0.00880968840352459!REST#5978;3:9.65002871612802:0.00111263624711459:0.00766305836272755!SIN3A#25942;3:5.40888472681514:0.00631896197799152:0.0275954869337009!SMARCB1#6598;3:18.2527157811574:0.00016439776067989:0.00202757885305232!SMARCC1#6599;3:43.6633593196315:1.20046018043203e-05:0.000301237051379483!SP1#6667;3:5.6983813781409:0.00540396270171217:0.0245972743780395!SREBF1#6720;3:47.0058494404883:9.62099323994382e-06:0.000254317112879396!TAF7#6879;3:11.4330694049239:0.000669018198194583:0.00541724233224097!TCF12#6938;3:10.6344649021864:0.000831352399020207:0.00628669996388903!TCF7L2#6934;3:10.7701765631373:0.000800318129839838:0.00612609389932152!USF1#7391;3:6.36149927720796:0.0038840405729056:0.0189899964137301!USF2#7392;3:12.9921973850696:0.000455897939342781:0.00421023299027507!ZEB1#6935;3:16.8884320175439:0.000207548691732758:0.00242354403129221 | |||
|tfbs_overrepresentation=0.147255,0.0586687,0.716932,0.0477154,0.199763,0.0460856,0.0430074,0.414564,0.03272,0.0257057,0.139423,0.225367,0.188771,0.125978,0.148679,0.0619003,0.140982,0.0982016,0.0528514,0.108057,0.188635,0.132577,0.081977,0.0948982,0.0415721,0.215492,0.209392,0.0907212,0.143747,0.0933697,0.0226057,0.114046,0.0180314,0.208242,0.0665252,0.0844722,0.00687964,0.0429682,0.120351,0.00227592,0.0964797,0.0246116,0.140039,0.184019,0.120917,0.0362416,0.0380166,0.0175714,0.111283,0.121201,0.154071,0.0541794,6.0767e-05,0.0929951,0.198787,0.0384161,0.107455,0.212709,0.0783235,0.105572,0.0294301,0.149417,0.108602,0.0759481,0.054569,0.0504887,0.352278,0.0600088,0.0860723,0.000888001,0.0831028,0.067678,0.00408688,0.119383,0.00747605,0.0171177,0.0964936,0.0436945,0.0372495,0.00725252,0.0956287,0.226912,0.0425,0.114846,0.291327,0.00327964,0.064341,0.209032,0.0154619,0.062747,0.0857568,0.0495878,0.0953825,0.0473737,0.0853887,0.115028,0.21992,0.153631,0.0927458,0.27413,0.0574857,0.276221,0.141874,0.0370665,0.219088,0.0409286,0.0669887,0.0649715,0.144217,0.0400492,0.0177901,0.0339971,0.149552,0.0176855,0.101221,0.0337525,0.0203386,0.0566549,0.139021,0.0838393,0.16671,0.214708,0.140123,0.0857827,0.102368,0.00106363,0.0906875,0.0147934,0.0843604,0.134932,0.0595773,0.0748346,0.001669,0.0227861,0.125792,0.108101,0.0648644,0.0553359,0.0330399,0.00395526,0.022776,0.0085119,0.203923,0.0128549,5.11179e-07,0.0693171,0.0988228,0.00365114,0.0389418,0.120833,0.0015841,0.143677,0.180712,0.0265818,0.0427088,0.117549,0.0747594,0.228385,0.0516985,0.0337251,0.227719,0.0952829,0.116642,0.147788,0.0413643,0.114283,0.0400322,0.127369,0.0403542,0.312091,0.179689,0.137725,0.12972,0.0541353,0.0799324,0.090079,0.140334,0.181817,0.178449,0.0356339,0.158844,0.122474,0.0274061,0.115574,0.0737247,0.118847,0.183031,0.0401756,0.0828697,0.173562,0.107145,0.187297,0.122935,0.228812,7.73357e-06,0.0470731,0.0782523,0.0602859,0.0676496,0.109673,0.0893019,0.060398,0.0308319,0.0606036,0.136451,0.259411,0.27358,0.15185,0.206299,0.0169462,0.0458667,0.104357,0.121154,0.1129,0.0549274,0.169057,0.164202,0.100942,0.062995,0.10299,0.0105855,0.37245,0.15606,0.161026,0.0738599,0.126611,0.138852,0.085973,0.060453,0.059896,0.0108418,0.0133328,0.0418404,0.0765029,0.0959204,0.0931946,0.0472272,0.263087,0.014161,0.214803,0.182472,0.00100585,0.0983991,0.0830921,0.116283,0.136838,0.0815104,0.111647,0.372804,0.117027,0.159052,0.185164,0.185743,0.0980288,0.0980899,0.159674,0.107242,0.0219021,0.0695832,0.0121776,0.0619218,0.1751,0.163376,0.128096,0.0345133,0.0810678,0.0811639,0.0920653,0.118078,0.0755168,0.278352,0.063292,0.254773,0.119261,0.0865903,0.0380459,0.130174,0.584917,0.131316,0.000191546,0.635872,0.563047,0.00210428,1.3468e-06,0.335423,0.0790073,0.261553,0.0222487,0.373681,2.59595e-06,0.49143,0.330703,0.0146881,0.00791734,0.178727,0.0030348,0.271958,0.292154,0.405773,0.0148713,0.581713,0.0643874,0.187251,0.0109219,0.181715,0.10624,0.109988,0.0620388,0.218329,0.427027,0.376924,0.025356,1.38143e-05,0.00107382,0.168255,0.370782,0.415647,0.484505,0.253571,0.276829,0.301787,0.481778,0.316882,0.223503,0.155672,0.236436,0.283727,0.314747,0.577664,0.291709,0.448095,0.0115542,0.102333,0.292835,5.39672e-06,0.439556,0.0807167,0.57762,0.0694028,0.18237,7.64446e-08,5.65743e-11,0.161148,0.275351,0.236471,0.185661,0.346319,0.535598,0.270984,0.258117,8.02923e-13,0.00637776,0.169228,0.248634,0.281576,0.135034,0.163244,0.0670502,0.0730934,0.184794,0.596648,0.176034,0.581837,0.0169683,0.102184,0.0462094,0.551561,0.00324632,8.44925e-17,0.312808,0.695172,0.0451077,0.0747529,0.229003,0.0222308,0.589326,0.154921,0.294698,0.34331,0.0282052,0.000431293,0.327108,0.00120886,0.278044,0.00692297,0.108847,0.0282539,0.336314,0.19763,0.15631,0.0106166,0.0182254,0.141711,0.420626,0.0374607,0.000957476,0.335105,0.144809,0.145539,0.385517,0.0818086,0.447325,0.459928,0.252232,0.152681,0.0465712,0.00985947,0.259235,0.134788,0.0985856,0.546222,0.293698,0.284593,0.0673219,0.306556,0.305777,5.69951e-07,0.503082,0.0391885,0.284629,0.262537,0.359455,0.226257,0.405955,0.41707,0.363685,0.464871,1.63525e-05,0.206222,0.03988,0.651524,0.113671,1.0114e-06,0.339277,0.0479524,0.281425,0.141758,4.166e-05,0.00680512,0.159617,0.00275523,0.372281,0.232251,0.189515,0.0891382,0.0595618,0.524997,0.257493,8.26983e-05,0.539392,8.63298e-05,0.0277379,0.404569,0.000670954,0.000578907,0.316179,0.0697683,0.0556835,0.192544,0.0779981,0.0575676,0.144322,0.223391,0.203656,0.116981,0.11631,0.191777,0.111931,0.28934,0.0435386,0.303336,0.126478,0.134852,0.10689,0.00427764,0.0627924,0.00151445,0.0179103,0.00605613,0.00461664,0.390395,0.0464827,0.169603,0.114583,0.104559,0.0899537,0.0866966,0.15983,0.107111,0.0438639,0.00389058,0.123593,0.129156,0.000107423,0.193675,0.0684384,0.0499762,0.0828956,0.0666953,0.182185,0.111277,0.219383,0.332809,0.19559,0.132201,2.80029e-06,0.0481795,0.0214786,0.0966069,0.127758,0.175785,0.184486,0.169234,0.0876426,0.0952322,0.0112557,0.222432,0.107043,0.275244,0.00481323,0.0160457,0.141119,0.211595,0.0300692,0.131551,0.0445237,0.052362,0.0235128,0.153187,0.0797897,0.0974211,0.160149,0.123526,0.0906475,0.0558058,0.0443426,0.000941007,0.137332,0.0145999,0.0656973,0.211746,0.0021409,0.0801488,0.0757897,0.161801,0.193215,0.0549034,0.0779715,0.0561838,0.0417636,0.0345419,0.0388736,0.00340073,0.170307,0.201033,0.0488949,0.174921,0.370421,0.0330727,0.00956472,0.02609,0.0394698,0.0596469,0.419264,0.122476,0.108872,0.11002,0.26144,0.0286025,0.00896808,0.144567,0.038848,0.0874516,0.0550279,0.144067,0.0353101,0.217069,0.190048,0.131088,1.43218e-05,0.0306378,1.5582e-06,0.0761239,0.172491,0.0818785,0.182701,0.00836526,0.147698,0.141463,0.167267,0.140622,0.0889592,2.61649e-06,0.0458479,0.0473033,0.094881,0.022113,0.132886,0.0774373,0.109194,0.128564,0.131452,0.00128046,0.120459,0.051838,0.0993999,0.0500365,0.061829,0.0755121,0.0936516,0.144075,0.0340203,0.0741807,0.277091,0.00049486,0.288159,0.21727,0.289306,0.119215,0.192475,0.177967,0.547859,0.057571,0.00115086,0.0143259,0.0608699,0.175319,0.300597,0.0713214,0.223874,0.00525614,0.0355833,0.125606,0.175094,6.94629e-09,0.000141874,0.206454,0.218192,0.108277,0.0673484,0.108748,0.0494066,0.0958493,0.205732,0.0755808,0.045654,0.110216,0.070276,0.226171,0.153469,0.0376916,0.13262,0.0450031,0.00148023,0.114242,0.0929549,0.172425,0.104948,0.221645,0.057168,0.234298,0.0759837,0.0457643,0.152372,0.194941,0.00207136,0.101607,0.327067,0.172982,0.340936,0.151597,0.0626744,0.191335,0.148574,8.47895e-13,0.155821,0.0718905,0.0919008,0.0602373,0.144304,0.15063,0.0973823,0.15503,0.170295,0.193653,0.137219,0.228144,0.251466,0.288096,0.11903,0.0838874,0.331451,0.000263756,0.112651,0.186638,0.174776,0.0948451,0.264079,0.0339656,0.140533,0.0997756,0.257598,0.103667,0.113069,0.025556,0.16791,0.09066,0.585505,0.0147868,0.188651,0.0813902,0.184948,0.0128995,0.311847,0.161789,0.0590944,0.00309372,0.178389,0.218229,0.0290303,5.40341e-13,0.0170505,0.0360851,0.0021796,0.131093,0.0434602,0.133616,0.418146,0.36927,0.449036,0.00206189,0.231447,0.18653,0.115047,0.37006,0.42622,0.448797,0.197484,0.396996,0.36145,0.406019,1.12468e-05,0.057779,9.31789e-11,0.11074,0.722159,0.390366,0.48809,0.50058,0.443185,0.00696618,0.0199034,0.000283689,0.227104,0.000951286,0.0167433,3.21074e-16,0.284625,0.0344717,0.0091887,0.0437169,0.00513616,0.164197,0.462688,0.287881,0.0113427,0.478174,0.336276,0.132529,0.258219,0.446557,0.243383,5.59455e-07,0.0140783,1.40974e-06,2.74091e-05,0.161598,0.000599447,1.48581e-06,0.150692,0.000266268,0.37357,6.9989e-07,0.0282154,0.00492096,2.35949e-07,3.61308e-06,0.20342,0.200493,0.20558,0.300504,0.25656,0.425963,0.00960524,0.383291,0.156104,0.141318,0.411941,0.0961477,0.314438,0.354789,0.163828,0.230581,0.120226,0.00486063,0.00162521,0.314429,0.181415,0.282286,0.000180531,0.0727621,0.0978616,0.165147,0.322213,0.00480191,0.33942,5.51386e-09,0.387276,0.522605,0.221908,0.180745,0.222037,0.416621,0.416292,0.462712,1.52985e-11,3.65193e-06,0.204817,0.452428,0.138871,0.027191,0.166905,0.19783,0.0833851,0.056391,0.140384,0.175199,0.332919,0.373557,0.523625,0.0980968,0.365487,0.178743,0.0140668,0.363192,0.00266072,0.203486,0.273398,0.0123025,0.4466,0.00977892,0.275347,1.26519e-06,0.305885,0.241132,0.371414,0.30666,5.42863e-18,0.0323359,0.00161207,0.00602464,0.250964,0.383276,0.457886,0.504711,0.220231,0.0355483,0.196976,0.019637,0.463751,0.0145214,0.307334,0.459728,0.044623,0.201728,0.472935,0.399569,0.273281,0.368095,0.275089,0.384593,0.47795,0.0740334,0.339729,0.197805,0.24107,0.0870376,0.332774,0.00734059,0.299887,0.0814305,0.205413,0.17639,0.0779009,0.276869,0.205298,0.0337138,0.18966,0.258854,0.188263,0.0719199,0.264884,0.162568,0.19104,0.163057,0.219428,0.208013,0.0900729,0.0953646,0.166124,0.252184,0.378361,0.255516,0.20753,0.000373385,0.179412,0.193601,0.220904,0.0269454,0.341681,0.00651011,0.21801,0.198614,0.0186488,0.123324,0.199468,0.0325925,0.0933115,0.12405,0.0172483,0.226869,0.27872,0.0855609,0.131118,0.0233967,0.0335483,0.222339,0.0673329,0.20847,0.266544,0.0066506,0.145701,0.229428,0.162145,0.228955,0.168748,0.0384949,0.0660995,0.0521984,0.0455518,0.000311698,0.201602,0.350452,0.0126763,0.120196,0.0986735,0.108462,0.0595618,0.21593,0.158479,0.220319,0.195218,0.124213,0.259632,0.30793,0.180606,0.159884,0.257294,0.150733,0.217112,0.123917,0.184317,0.185335,0.0723291,0.0367308,0.00371613,0.203781,0.21382,0.207559,0.141867,0.193031,0.249101,0.115972,0.224568,0.246105,0.173026,0.200432,0.139785,0.197112,0.240478,0.156465,0.13108,0.256963,0.222798,0.172134,0.176789,0.0969345,0.0219648,0.310405,0.280943,0.218161,0.0822373,0.0219487,0.106739,0.0536053,0.0537737,0.15113,0.078016,0.0407233,0.0537355,0.0577193,0.0377035,0.211332,0.187731,0.233626,0.189559,0.0812887,0.0981146,0.064145,0.121913,0.0638699,0.104603,0.0663259,0.0762523,0.128736,0.109171,0.04411,0.066952,0.089609,0.0367455,0.13497,0.204393,0.295769,0.00499908,0.347036,0.141729,0.0381402,0.0359756,8.667e-05,0.227491,0.29837,0.253509,0.177664,0.28365,0.264413,0.131761,0.160658,0.206239,0.0213159,0.28689,0.236464,0.325148,0.115817,0.0257187,0.223831,0.11528,0.194982,0.190993,0.281727,0.00480369,1.2918e-05,0.164638,0.224257,0.0935776,0.327622,0.225752,0.207791,0.0958756,0.0859274,0.056548,0.171683,0.0133429,0.271275,0.071111,0.0404514,0.101021,0.222548,0.175934,0.157274,0.215705,0.035048,0.205954,0.361435 | |tfbs_overrepresentation=0.147255,0.0586687,0.716932,0.0477154,0.199763,0.0460856,0.0430074,0.414564,0.03272,0.0257057,0.139423,0.225367,0.188771,0.125978,0.148679,0.0619003,0.140982,0.0982016,0.0528514,0.108057,0.188635,0.132577,0.081977,0.0948982,0.0415721,0.215492,0.209392,0.0907212,0.143747,0.0933697,0.0226057,0.114046,0.0180314,0.208242,0.0665252,0.0844722,0.00687964,0.0429682,0.120351,0.00227592,0.0964797,0.0246116,0.140039,0.184019,0.120917,0.0362416,0.0380166,0.0175714,0.111283,0.121201,0.154071,0.0541794,6.0767e-05,0.0929951,0.198787,0.0384161,0.107455,0.212709,0.0783235,0.105572,0.0294301,0.149417,0.108602,0.0759481,0.054569,0.0504887,0.352278,0.0600088,0.0860723,0.000888001,0.0831028,0.067678,0.00408688,0.119383,0.00747605,0.0171177,0.0964936,0.0436945,0.0372495,0.00725252,0.0956287,0.226912,0.0425,0.114846,0.291327,0.00327964,0.064341,0.209032,0.0154619,0.062747,0.0857568,0.0495878,0.0953825,0.0473737,0.0853887,0.115028,0.21992,0.153631,0.0927458,0.27413,0.0574857,0.276221,0.141874,0.0370665,0.219088,0.0409286,0.0669887,0.0649715,0.144217,0.0400492,0.0177901,0.0339971,0.149552,0.0176855,0.101221,0.0337525,0.0203386,0.0566549,0.139021,0.0838393,0.16671,0.214708,0.140123,0.0857827,0.102368,0.00106363,0.0906875,0.0147934,0.0843604,0.134932,0.0595773,0.0748346,0.001669,0.0227861,0.125792,0.108101,0.0648644,0.0553359,0.0330399,0.00395526,0.022776,0.0085119,0.203923,0.0128549,5.11179e-07,0.0693171,0.0988228,0.00365114,0.0389418,0.120833,0.0015841,0.143677,0.180712,0.0265818,0.0427088,0.117549,0.0747594,0.228385,0.0516985,0.0337251,0.227719,0.0952829,0.116642,0.147788,0.0413643,0.114283,0.0400322,0.127369,0.0403542,0.312091,0.179689,0.137725,0.12972,0.0541353,0.0799324,0.090079,0.140334,0.181817,0.178449,0.0356339,0.158844,0.122474,0.0274061,0.115574,0.0737247,0.118847,0.183031,0.0401756,0.0828697,0.173562,0.107145,0.187297,0.122935,0.228812,7.73357e-06,0.0470731,0.0782523,0.0602859,0.0676496,0.109673,0.0893019,0.060398,0.0308319,0.0606036,0.136451,0.259411,0.27358,0.15185,0.206299,0.0169462,0.0458667,0.104357,0.121154,0.1129,0.0549274,0.169057,0.164202,0.100942,0.062995,0.10299,0.0105855,0.37245,0.15606,0.161026,0.0738599,0.126611,0.138852,0.085973,0.060453,0.059896,0.0108418,0.0133328,0.0418404,0.0765029,0.0959204,0.0931946,0.0472272,0.263087,0.014161,0.214803,0.182472,0.00100585,0.0983991,0.0830921,0.116283,0.136838,0.0815104,0.111647,0.372804,0.117027,0.159052,0.185164,0.185743,0.0980288,0.0980899,0.159674,0.107242,0.0219021,0.0695832,0.0121776,0.0619218,0.1751,0.163376,0.128096,0.0345133,0.0810678,0.0811639,0.0920653,0.118078,0.0755168,0.278352,0.063292,0.254773,0.119261,0.0865903,0.0380459,0.130174,0.584917,0.131316,0.000191546,0.635872,0.563047,0.00210428,1.3468e-06,0.335423,0.0790073,0.261553,0.0222487,0.373681,2.59595e-06,0.49143,0.330703,0.0146881,0.00791734,0.178727,0.0030348,0.271958,0.292154,0.405773,0.0148713,0.581713,0.0643874,0.187251,0.0109219,0.181715,0.10624,0.109988,0.0620388,0.218329,0.427027,0.376924,0.025356,1.38143e-05,0.00107382,0.168255,0.370782,0.415647,0.484505,0.253571,0.276829,0.301787,0.481778,0.316882,0.223503,0.155672,0.236436,0.283727,0.314747,0.577664,0.291709,0.448095,0.0115542,0.102333,0.292835,5.39672e-06,0.439556,0.0807167,0.57762,0.0694028,0.18237,7.64446e-08,5.65743e-11,0.161148,0.275351,0.236471,0.185661,0.346319,0.535598,0.270984,0.258117,8.02923e-13,0.00637776,0.169228,0.248634,0.281576,0.135034,0.163244,0.0670502,0.0730934,0.184794,0.596648,0.176034,0.581837,0.0169683,0.102184,0.0462094,0.551561,0.00324632,8.44925e-17,0.312808,0.695172,0.0451077,0.0747529,0.229003,0.0222308,0.589326,0.154921,0.294698,0.34331,0.0282052,0.000431293,0.327108,0.00120886,0.278044,0.00692297,0.108847,0.0282539,0.336314,0.19763,0.15631,0.0106166,0.0182254,0.141711,0.420626,0.0374607,0.000957476,0.335105,0.144809,0.145539,0.385517,0.0818086,0.447325,0.459928,0.252232,0.152681,0.0465712,0.00985947,0.259235,0.134788,0.0985856,0.546222,0.293698,0.284593,0.0673219,0.306556,0.305777,5.69951e-07,0.503082,0.0391885,0.284629,0.262537,0.359455,0.226257,0.405955,0.41707,0.363685,0.464871,1.63525e-05,0.206222,0.03988,0.651524,0.113671,1.0114e-06,0.339277,0.0479524,0.281425,0.141758,4.166e-05,0.00680512,0.159617,0.00275523,0.372281,0.232251,0.189515,0.0891382,0.0595618,0.524997,0.257493,8.26983e-05,0.539392,8.63298e-05,0.0277379,0.404569,0.000670954,0.000578907,0.316179,0.0697683,0.0556835,0.192544,0.0779981,0.0575676,0.144322,0.223391,0.203656,0.116981,0.11631,0.191777,0.111931,0.28934,0.0435386,0.303336,0.126478,0.134852,0.10689,0.00427764,0.0627924,0.00151445,0.0179103,0.00605613,0.00461664,0.390395,0.0464827,0.169603,0.114583,0.104559,0.0899537,0.0866966,0.15983,0.107111,0.0438639,0.00389058,0.123593,0.129156,0.000107423,0.193675,0.0684384,0.0499762,0.0828956,0.0666953,0.182185,0.111277,0.219383,0.332809,0.19559,0.132201,2.80029e-06,0.0481795,0.0214786,0.0966069,0.127758,0.175785,0.184486,0.169234,0.0876426,0.0952322,0.0112557,0.222432,0.107043,0.275244,0.00481323,0.0160457,0.141119,0.211595,0.0300692,0.131551,0.0445237,0.052362,0.0235128,0.153187,0.0797897,0.0974211,0.160149,0.123526,0.0906475,0.0558058,0.0443426,0.000941007,0.137332,0.0145999,0.0656973,0.211746,0.0021409,0.0801488,0.0757897,0.161801,0.193215,0.0549034,0.0779715,0.0561838,0.0417636,0.0345419,0.0388736,0.00340073,0.170307,0.201033,0.0488949,0.174921,0.370421,0.0330727,0.00956472,0.02609,0.0394698,0.0596469,0.419264,0.122476,0.108872,0.11002,0.26144,0.0286025,0.00896808,0.144567,0.038848,0.0874516,0.0550279,0.144067,0.0353101,0.217069,0.190048,0.131088,1.43218e-05,0.0306378,1.5582e-06,0.0761239,0.172491,0.0818785,0.182701,0.00836526,0.147698,0.141463,0.167267,0.140622,0.0889592,2.61649e-06,0.0458479,0.0473033,0.094881,0.022113,0.132886,0.0774373,0.109194,0.128564,0.131452,0.00128046,0.120459,0.051838,0.0993999,0.0500365,0.061829,0.0755121,0.0936516,0.144075,0.0340203,0.0741807,0.277091,0.00049486,0.288159,0.21727,0.289306,0.119215,0.192475,0.177967,0.547859,0.057571,0.00115086,0.0143259,0.0608699,0.175319,0.300597,0.0713214,0.223874,0.00525614,0.0355833,0.125606,0.175094,6.94629e-09,0.000141874,0.206454,0.218192,0.108277,0.0673484,0.108748,0.0494066,0.0958493,0.205732,0.0755808,0.045654,0.110216,0.070276,0.226171,0.153469,0.0376916,0.13262,0.0450031,0.00148023,0.114242,0.0929549,0.172425,0.104948,0.221645,0.057168,0.234298,0.0759837,0.0457643,0.152372,0.194941,0.00207136,0.101607,0.327067,0.172982,0.340936,0.151597,0.0626744,0.191335,0.148574,8.47895e-13,0.155821,0.0718905,0.0919008,0.0602373,0.144304,0.15063,0.0973823,0.15503,0.170295,0.193653,0.137219,0.228144,0.251466,0.288096,0.11903,0.0838874,0.331451,0.000263756,0.112651,0.186638,0.174776,0.0948451,0.264079,0.0339656,0.140533,0.0997756,0.257598,0.103667,0.113069,0.025556,0.16791,0.09066,0.585505,0.0147868,0.188651,0.0813902,0.184948,0.0128995,0.311847,0.161789,0.0590944,0.00309372,0.178389,0.218229,0.0290303,5.40341e-13,0.0170505,0.0360851,0.0021796,0.131093,0.0434602,0.133616,0.418146,0.36927,0.449036,0.00206189,0.231447,0.18653,0.115047,0.37006,0.42622,0.448797,0.197484,0.396996,0.36145,0.406019,1.12468e-05,0.057779,9.31789e-11,0.11074,0.722159,0.390366,0.48809,0.50058,0.443185,0.00696618,0.0199034,0.000283689,0.227104,0.000951286,0.0167433,3.21074e-16,0.284625,0.0344717,0.0091887,0.0437169,0.00513616,0.164197,0.462688,0.287881,0.0113427,0.478174,0.336276,0.132529,0.258219,0.446557,0.243383,5.59455e-07,0.0140783,1.40974e-06,2.74091e-05,0.161598,0.000599447,1.48581e-06,0.150692,0.000266268,0.37357,6.9989e-07,0.0282154,0.00492096,2.35949e-07,3.61308e-06,0.20342,0.200493,0.20558,0.300504,0.25656,0.425963,0.00960524,0.383291,0.156104,0.141318,0.411941,0.0961477,0.314438,0.354789,0.163828,0.230581,0.120226,0.00486063,0.00162521,0.314429,0.181415,0.282286,0.000180531,0.0727621,0.0978616,0.165147,0.322213,0.00480191,0.33942,5.51386e-09,0.387276,0.522605,0.221908,0.180745,0.222037,0.416621,0.416292,0.462712,1.52985e-11,3.65193e-06,0.204817,0.452428,0.138871,0.027191,0.166905,0.19783,0.0833851,0.056391,0.140384,0.175199,0.332919,0.373557,0.523625,0.0980968,0.365487,0.178743,0.0140668,0.363192,0.00266072,0.203486,0.273398,0.0123025,0.4466,0.00977892,0.275347,1.26519e-06,0.305885,0.241132,0.371414,0.30666,5.42863e-18,0.0323359,0.00161207,0.00602464,0.250964,0.383276,0.457886,0.504711,0.220231,0.0355483,0.196976,0.019637,0.463751,0.0145214,0.307334,0.459728,0.044623,0.201728,0.472935,0.399569,0.273281,0.368095,0.275089,0.384593,0.47795,0.0740334,0.339729,0.197805,0.24107,0.0870376,0.332774,0.00734059,0.299887,0.0814305,0.205413,0.17639,0.0779009,0.276869,0.205298,0.0337138,0.18966,0.258854,0.188263,0.0719199,0.264884,0.162568,0.19104,0.163057,0.219428,0.208013,0.0900729,0.0953646,0.166124,0.252184,0.378361,0.255516,0.20753,0.000373385,0.179412,0.193601,0.220904,0.0269454,0.341681,0.00651011,0.21801,0.198614,0.0186488,0.123324,0.199468,0.0325925,0.0933115,0.12405,0.0172483,0.226869,0.27872,0.0855609,0.131118,0.0233967,0.0335483,0.222339,0.0673329,0.20847,0.266544,0.0066506,0.145701,0.229428,0.162145,0.228955,0.168748,0.0384949,0.0660995,0.0521984,0.0455518,0.000311698,0.201602,0.350452,0.0126763,0.120196,0.0986735,0.108462,0.0595618,0.21593,0.158479,0.220319,0.195218,0.124213,0.259632,0.30793,0.180606,0.159884,0.257294,0.150733,0.217112,0.123917,0.184317,0.185335,0.0723291,0.0367308,0.00371613,0.203781,0.21382,0.207559,0.141867,0.193031,0.249101,0.115972,0.224568,0.246105,0.173026,0.200432,0.139785,0.197112,0.240478,0.156465,0.13108,0.256963,0.222798,0.172134,0.176789,0.0969345,0.0219648,0.310405,0.280943,0.218161,0.0822373,0.0219487,0.106739,0.0536053,0.0537737,0.15113,0.078016,0.0407233,0.0537355,0.0577193,0.0377035,0.211332,0.187731,0.233626,0.189559,0.0812887,0.0981146,0.064145,0.121913,0.0638699,0.104603,0.0663259,0.0762523,0.128736,0.109171,0.04411,0.066952,0.089609,0.0367455,0.13497,0.204393,0.295769,0.00499908,0.347036,0.141729,0.0381402,0.0359756,8.667e-05,0.227491,0.29837,0.253509,0.177664,0.28365,0.264413,0.131761,0.160658,0.206239,0.0213159,0.28689,0.236464,0.325148,0.115817,0.0257187,0.223831,0.11528,0.194982,0.190993,0.281727,0.00480369,1.2918e-05,0.164638,0.224257,0.0935776,0.327622,0.225752,0.207791,0.0958756,0.0859274,0.056548,0.171683,0.0133429,0.271275,0.071111,0.0404514,0.101021,0.222548,0.175934,0.157274,0.215705,0.035048,0.205954,0.361435 | ||
}} | }} | ||
Revision as of 13:15, 5 September 2012
Full id: C3441_Eosinophils_Mast_Neutrophils_Preadipocyte_CD14_Fibroblast_Smooth
Phase1 CAGE Peaks
| Hg19::chr14:62162224..62162254,+ | p1@HIF1A |
| Hg19::chr14:62162258..62162269,+ | p2@HIF1A |
| Hg19::chr14:62162285..62162296,+ | p3@HIF1A |
Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data
No results for this coexpression
Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data
No GOStat results
Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>
| Ontology term | p-value | n |
|---|---|---|
| animal cell | 6.68e-27 | 679 |
| eukaryotic cell | 6.68e-27 | 679 |
| somatic cell | 1.69e-23 | 591 |
| multi fate stem cell | 3.53e-20 | 430 |
| somatic stem cell | 6.66e-19 | 436 |
| stem cell | 2.42e-18 | 444 |
| CD14-positive, CD16-negative classical monocyte | 6.17e-18 | 42 |
| classical monocyte | 1.17e-17 | 45 |
| native cell | 2.55e-17 | 722 |
| non-terminally differentiated cell | 8.65e-17 | 180 |
| myeloid leukocyte | 2.77e-15 | 76 |
| monopoietic cell | 1.66e-12 | 63 |
| monocyte | 1.66e-12 | 63 |
| monoblast | 1.66e-12 | 63 |
| promonocyte | 1.66e-12 | 63 |
| macrophage dendritic cell progenitor | 4.09e-12 | 65 |
| muscle precursor cell | 7.63e-12 | 57 |
| myoblast | 7.63e-12 | 57 |
| multi-potent skeletal muscle stem cell | 7.63e-12 | 57 |
| fibroblast | 8.51e-12 | 75 |
| granulocyte monocyte progenitor cell | 1.20e-11 | 71 |
| connective tissue cell | 1.38e-10 | 365 |
| myeloid lineage restricted progenitor cell | 1.69e-10 | 70 |
| muscle cell | 1.69e-10 | 54 |
| mesenchymal cell | 5.09e-10 | 358 |
| contractile cell | 1.38e-08 | 59 |
| electrically responsive cell | 3.65e-08 | 60 |
| electrically active cell | 3.65e-08 | 60 |
| smooth muscle cell | 4.10e-07 | 42 |
| smooth muscle myoblast | 4.10e-07 | 42 |
| motile cell | 5.94e-07 | 390 |
Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data
Novel motifs
JASPAR motifs
| Motifs | -log10(p-value) |
|---|---|
|
{{{tfbs_overrepresentation_jaspar}}} |
ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data
(#promoters = Number of promoters in this coexpression cluster that have ChIP signal of the TF)
| TF | #promoters | Enrichment | p-value | q-value |
|---|---|---|---|---|
| ATF3#467 | 3 | 22.4631745260087 | 8.81932387510763e-05 | 0.00129474468118128 |
| BHLHE40#8553 | 3 | 44.8718135469774 | 1.10603738662898e-05 | 0.00028423582338126 |
| CCNT2#905 | 3 | 6.33620157696263 | 0.00393075003576489 | 0.0189635810691634 |
| CTCF#10664 | 3 | 5.36025637307503 | 0.006492509252767 | 0.0278880963169258 |
| E2F1#1869 | 3 | 4.90738921487932 | 0.00846098534723939 | 0.0324384878925272 |
| E2F6#1876 | 3 | 5.01715573169739 | 0.0079176980688633 | 0.032128233297615 |
| EGR1#1958 | 3 | 4.98817909481014 | 0.00805648813738344 | 0.0319782443212294 |
| ELF1#1997 | 3 | 4.25809795880754 | 0.0129517987505461 | 0.0461080856838901 |
| ETS1#2113 | 3 | 9.72876092220234 | 0.00108584009258484 | 0.0076089676214082 |
| FOS#2353 | 3 | 8.9979553088944 | 0.00137249927241713 | 0.00896170375192076 |
| FOSL2#2355 | 3 | 16.9302006045617 | 0.000206016205317162 | 0.00242599238551348 |
| GATA3#2625 | 3 | 27.236516357206 | 4.94721007899563e-05 | 0.000850085017177072 |
| GTF2B#2959 | 3 | 31.9438299343242 | 3.06634405746243e-05 | 0.000626826985745389 |
| GTF2F1#2962 | 3 | 12.7396608767577 | 0.000483552504743859 | 0.00433193858663098 |
| HDAC2#3066 | 3 | 13.4156202366263 | 0.000414076139985721 | 0.00390621425200693 |
| HMGN3#9324 | 3 | 8.17854772335059 | 0.00182776694216421 | 0.0108528143540104 |
| IRF1#3659 | 3 | 7.6371637535639 | 0.00224469274729724 | 0.0127826317249169 |
| MAX#4149 | 3 | 6.45255550900712 | 0.00372191383426551 | 0.0186138466186302 |
| MXI1#4601 | 3 | 9.9615716287593 | 0.00101147054125902 | 0.00719157000875151 |
| MYC#4609 | 3 | 5.2222818716094 | 0.00702084375574015 | 0.0293864179627183 |
| NFKB1#4790 | 3 | 5.48806342419384 | 0.00604938181565543 | 0.0269099321682101 |
| NFYA#4800 | 3 | 18.4255806998305 | 0.000159813550781416 | 0.00199221382550255 |
| NFYB#4801 | 3 | 16.7597932535365 | 0.000212364992329618 | 0.00245290725878268 |
| PAX5#5079 | 3 | 6.66956553117783 | 0.00337029099967726 | 0.0172611721123624 |
| PBX3#5090 | 3 | 21.9145126867441 | 9.49854535978121e-05 | 0.00136378688318695 |
| POU2F2#5452 | 3 | 9.10612405774252 | 0.00132416519268213 | 0.00880968840352459 |
| REST#5978 | 3 | 9.65002871612802 | 0.00111263624711459 | 0.00766305836272755 |
| SIN3A#25942 | 3 | 5.40888472681514 | 0.00631896197799152 | 0.0275954869337009 |
| SMARCB1#6598 | 3 | 18.2527157811574 | 0.00016439776067989 | 0.00202757885305232 |
| SMARCC1#6599 | 3 | 43.6633593196315 | 1.20046018043203e-05 | 0.000301237051379483 |
| SP1#6667 | 3 | 5.6983813781409 | 0.00540396270171217 | 0.0245972743780395 |
| SREBF1#6720 | 3 | 47.0058494404883 | 9.62099323994382e-06 | 0.000254317112879396 |
| TAF7#6879 | 3 | 11.4330694049239 | 0.000669018198194583 | 0.00541724233224097 |
| TCF12#6938 | 3 | 10.6344649021864 | 0.000831352399020207 | 0.00628669996388903 |
| TCF7L2#6934 | 3 | 10.7701765631373 | 0.000800318129839838 | 0.00612609389932152 |
| USF1#7391 | 3 | 6.36149927720796 | 0.0038840405729056 | 0.0189899964137301 |
| USF2#7392 | 3 | 12.9921973850696 | 0.000455897939342781 | 0.00421023299027507 |
| ZEB1#6935 | 3 | 16.8884320175439 | 0.000207548691732758 | 0.00242354403129221 |
Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data
This analysis result is provided for C0 - C305 clusters.
