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|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0.332253532589108,0.333536012540613,0,0,0,0,0,0,0,0,0,0,0,0,0,0.233862600660672,0,0,0.235049592923114,0.0896964873768703,0,0,0,0.0755555083173967,0,0.0434877098916977,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202532613765862,0.298598404391112,0,0,0,0,0,0,0,0,0.0623453268781661,0.0794029580432856,0.117694531083735,0.188961993756195,0.366462414722097,0.0501827898833331,0.0579564777021591,0,0.619115396805057,0.643600365975365,0.809119394381159,0.123224102318956,0.248547045480803,0.359361726896717,0.622185796580742,0.260679637160558,0.58157651234705,0.497394857275281,0.559618846991764,0.105918927514698,0,0,0,0,0,0,0,0,0.0570741246689917,0,0,0,0.0572260417947564,0,0,0,0,0,0,0.0681426399143868,0,0.981394323278908,0.391094785488476,0.652381719989424,0.503622256242295,0.786966868637322,0.849195271586459,0.897755490232023,0,0,0,0,0,0,0,0.476065720837817,0.594024622495336,0.049400930804471,0,0,0,0.397576159694634,0.368530492265014,0.191466791172533,0.501280243097618,0.706792277740834,0.370758236035021,0.415350749878024,0,0,0,0.117751234261337,0,0,0,0.0876889746819101,0.195655683069782,0.36871582527888,0.216238090448821,0.516914315251538,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0430998257964463,0,0.572147484147785,0.207944115456279,0.220327159451074,0.050950927696323,0,0.128187800254637,0,0.113480691050742,0.0872055405749939,0.10782518581431,0.0843266682486015,0.197085843136582,0.17686373673239,0.0788034163803455,0.13867729912934,0.278483662180697,0.237117088460026,0.145594936782439,0,0.211484846235453,0,0.0805006992779881,0,0.0294389011296462,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.348898630073669,0.354523749124797,0,0,0.059546782971018,0,0.216501115071344,0.0465301846457956,0.0436774795678287,0,0,0.155621982117931,0.144663790035931,0.387507953564204,0,0,0,0,0,0.26617164297258,0.16004921783491,0.266306063082452,0.112371000179637,0.208137646145581,0.140386497797093,0.185987593418638,0.116878016827302,0.166003868525548,0,0,1.1439817775682,0.0719044921483595,0.0528318955547673,0.185286830672538,0.314718404397151,0.497137501359222,0.507904553873828,0.45941355971378,0,0,0,0,0,0,0,0,0.331674359075005,0.410683819406564,0,0,0,0,0,0,0,0,0,0.291073584836546,0,0.0401904713554668,0.103415315291146,0.0412290086072516,0.0857765460992942,0.0793274429263655,0.0813205577374289,0.141910602432655,0.0529304404135566,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03443995763281,0.978328134254593,1.05603096745421,0.737843019804697,0.894915307697504,0.805659307389941,0.948026034648986,0.88785277603774,1.12675971748851,1.03823502014649,0,0,0,0,0.0413232520190408,0,0,0.081359932135904,0.0604381279967265,0,0,0.134901778521757,0.0731992624220758,0.0269518943326477,0.0242538736058389,0.169172763866184,0.0690741623162511,0.0766073954291401,0.14986111676545,0.109241263598538,0.226790206858766,0.0354759961767123,0.084671484249692,0.0589368614163519,0,0.0352754493378881,0.13147456617392,0.142510765959715,0.0276517186754466,0,0.0924644954689594,0.0952696640988666,0.148982201447044,0.0625582350728301,0.0383032227056179,0,0.0456455446387725,0.0422650922646472,0.0380084440794953,0,0
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|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=CL:0000117!3.83e-09!23;CL:0000337!3.83e-09!23;CL:0000540!3.98e-08!33;CL:0000047!3.98e-08!33;CL:0000031!3.98e-08!33;CL:0000404!3.98e-08!33
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0000073!1.27e-25!54;UBERON:0002346!1.99e-24!64;UBERON:0003075!1.99e-24!64;UBERON:0007284!1.99e-24!64;UBERON:0001049!7.55e-24!52;UBERON:0005068!7.55e-24!52;UBERON:0006241!7.55e-24!52;UBERON:0007135!7.55e-24!52;UBERON:0001017!3.90e-23!73;UBERON:0001016!7.06e-22!75;UBERON:0000955!6.03e-21!47;UBERON:0006238!6.03e-21!47;UBERON:0002616!2.78e-20!46;UBERON:0003056!1.03e-19!49;UBERON:0010371!2.22e-19!73;UBERON:0003080!2.74e-19!40;UBERON:0010314!8.08e-19!92;UBERON:0002780!1.28e-18!39;UBERON:0001890!1.28e-18!39;UBERON:0006240!1.28e-18!39;UBERON:0004121!3.49e-18!95;UBERON:0000924!3.49e-18!95;UBERON:0006601!3.49e-18!95;UBERON:0002020!6.69e-16!34;UBERON:0003528!2.99e-13!29;UBERON:0002791!2.99e-13!29;UBERON:0001893!2.99e-13!29;UBERON:0002021!5.66e-10!10;UBERON:0000411!5.66e-10!10;UBERON:0001950!5.66e-10!10;UBERON:0000956!5.36e-09!21;UBERON:0001869!5.36e-09!21;UBERON:0000203!5.36e-09!21;UBERON:0002619!7.81e-08!17;UBERON:0002369!7.67e-07!7;UBERON:0006858!7.67e-07!7
}}
}}

Revision as of 16:41, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr12:103800037..103800050,+p@chr12:103800037..103800050
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Mm9::chr18:25911757..25911774,+p@chr18:25911757..25911774
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Mm9::chr2:132607437..132607452,+p4@Chgb
Mm9::chr2:132611711..132611724,+p@chr2:132611711..132611724
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Mm9::chr2:132618170..132618205,+p@chr2:132618170..132618205
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Mm9::chr2:132618264..132618278,+p@chr2:132618264..132618278
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Cell Type
Ontology termp-valuen
CNS neuron (sensu Vertebrata)3.83e-0923
neuroblast (sensu Vertebrata)3.83e-0923
neuron3.98e-0833
neuronal stem cell3.98e-0833
neuroblast3.98e-0833
electrically signaling cell3.98e-0833

Uber Anatomy
Ontology termp-valuen
regional part of nervous system1.27e-2554
neurectoderm1.99e-2464
neural plate1.99e-2464
presumptive neural plate1.99e-2464
neural tube7.55e-2452
neural rod7.55e-2452
future spinal cord7.55e-2452
neural keel7.55e-2452
central nervous system3.90e-2373
nervous system7.06e-2275
brain6.03e-2147
future brain6.03e-2147
regional part of brain2.78e-2046
pre-chordal neural plate1.03e-1949
ecto-epithelium2.22e-1973
anterior neural tube2.74e-1940
structure with developmental contribution from neural crest8.08e-1992
regional part of forebrain1.28e-1839
forebrain1.28e-1839
future forebrain1.28e-1839
ectoderm-derived structure3.49e-1895
ectoderm3.49e-1895
presumptive ectoderm3.49e-1895
gray matter6.69e-1634
brain grey matter2.99e-1329
regional part of telencephalon2.99e-1329
telencephalon2.99e-1329
occipital lobe5.66e-1010
visual cortex5.66e-1010
neocortex5.66e-1010
cerebral cortex5.36e-0921
cerebral hemisphere5.36e-0921
pallium5.36e-0921
regional part of cerebral cortex7.81e-0817
adrenal gland7.67e-077
adrenal/interrenal gland7.67e-077


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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