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MCL coexpression mm9:1345: Difference between revisions

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|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=CL:0002319!5.46e-13!43;CL:0000117!6.31e-13!23;CL:0000337!6.31e-13!23;CL:0000055!9.10e-13!49;CL:0000221!2.16e-12!44;CL:0000133!2.16e-12!44;CL:0000540!6.64e-09!33;CL:0000047!6.64e-09!33;CL:0000031!6.64e-09!33;CL:0000404!6.64e-09!33;CL:0000393!9.22e-09!39;CL:0000211!9.22e-09!39;CL:0002453!1.63e-07!8
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0001017!1.85e-26!73;UBERON:0001016!4.47e-25!75;UBERON:0001049!1.16e-24!52;UBERON:0005068!1.16e-24!52;UBERON:0006241!1.16e-24!52;UBERON:0007135!1.16e-24!52;UBERON:0000073!3.35e-24!54;UBERON:0002346!1.64e-23!64;UBERON:0003075!1.64e-23!64;UBERON:0007284!1.64e-23!64;UBERON:0002020!2.15e-23!34;UBERON:0004121!4.65e-23!95;UBERON:0000924!4.65e-23!95;UBERON:0006601!4.65e-23!95;UBERON:0010371!6.06e-22!73;UBERON:0000955!2.47e-20!47;UBERON:0006238!2.47e-20!47;UBERON:0002616!3.50e-20!46;UBERON:0003528!1.91e-19!29;UBERON:0002791!1.91e-19!29;UBERON:0001893!1.91e-19!29;UBERON:0003080!2.08e-17!40;UBERON:0002780!3.83e-17!39;UBERON:0001890!3.83e-17!39;UBERON:0006240!3.83e-17!39;UBERON:0003056!6.99e-17!49;UBERON:0000956!1.33e-16!21;UBERON:0001869!1.33e-16!21;UBERON:0000203!1.33e-16!21;UBERON:0002619!2.76e-13!17;UBERON:0010314!1.78e-11!92;UBERON:0003076!6.68e-08!12;UBERON:0003057!6.68e-08!12;UBERON:0002021!9.59e-08!10;UBERON:0000411!9.59e-08!10;UBERON:0001950!9.59e-08!10;UBERON:0001954!5.05e-07!7;UBERON:0003022!5.05e-07!7;UBERON:0002421!5.05e-07!7;UBERON:0000349!5.05e-07!7;UBERON:0002600!5.05e-07!7
}}
}}

Revision as of 16:44, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr13:43711137..43711157,+p4@Rnf182
Mm9::chr13:84196042..84196073,-p@chr13:84196042..84196073
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Mm9::chr14:13178608..13178630,-p5@Fezf2
Mm9::chr8:87297280..87297326,-p2@Nfix
Mm9::chr8:87297330..87297365,-p5@Nfix
Mm9::chr8:87298020..87298041,-p9@Nfix


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
central nervous system1.85e-2673
nervous system4.47e-2575
neural tube1.16e-2452
neural rod1.16e-2452
future spinal cord1.16e-2452
neural keel1.16e-2452
regional part of nervous system3.35e-2454
neurectoderm1.64e-2364
neural plate1.64e-2364
presumptive neural plate1.64e-2364
gray matter2.15e-2334
ectoderm-derived structure4.65e-2395
ectoderm4.65e-2395
presumptive ectoderm4.65e-2395
ecto-epithelium6.06e-2273
brain2.47e-2047
future brain2.47e-2047
regional part of brain3.50e-2046
brain grey matter1.91e-1929
regional part of telencephalon1.91e-1929
telencephalon1.91e-1929
anterior neural tube2.08e-1740
regional part of forebrain3.83e-1739
forebrain3.83e-1739
future forebrain3.83e-1739
pre-chordal neural plate6.99e-1749
cerebral cortex1.33e-1621
cerebral hemisphere1.33e-1621
pallium1.33e-1621
regional part of cerebral cortex2.76e-1317
structure with developmental contribution from neural crest1.78e-1192
posterior neural tube6.68e-0812
chordal neural plate6.68e-0812
occipital lobe9.59e-0810
visual cortex9.59e-0810
neocortex9.59e-0810
Ammon's horn5.05e-077
lobe parts of cerebral cortex5.05e-077
hippocampal formation5.05e-077
limbic system5.05e-077
limbic lobe5.05e-077


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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