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MCL coexpression mm9:2837: Difference between revisions

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|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=CL:0000117!1.02e-07!23;CL:0000337!1.02e-07!23
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0000073!1.44e-12!54;UBERON:0001017!2.84e-12!73;UBERON:0002020!4.78e-12!34;UBERON:0001016!6.46e-12!75;UBERON:0001049!1.26e-11!52;UBERON:0005068!1.26e-11!52;UBERON:0006241!1.26e-11!52;UBERON:0007135!1.26e-11!52;UBERON:0004121!5.13e-11!95;UBERON:0000924!5.13e-11!95;UBERON:0006601!5.13e-11!95;UBERON:0004111!1.84e-10!122;UBERON:0002107!1.89e-10!22;UBERON:0007499!1.89e-10!22;UBERON:0006925!1.89e-10!22;UBERON:0009497!1.89e-10!22;UBERON:0000015!1.89e-10!22;UBERON:0002423!1.89e-10!22;UBERON:0006235!1.89e-10!22;UBERON:0008835!1.89e-10!22;UBERON:0003894!1.89e-10!22;UBERON:0004161!1.89e-10!22;UBERON:0008836!1.89e-10!22;UBERON:0000025!2.08e-10!114;UBERON:0002346!2.58e-10!64;UBERON:0003075!2.58e-10!64;UBERON:0007284!2.58e-10!64;UBERON:0009854!2.88e-10!23;UBERON:0009856!2.88e-10!23;UBERON:0003528!4.55e-10!29;UBERON:0002791!4.55e-10!29;UBERON:0001893!4.55e-10!29;UBERON:0000468!4.60e-10!333;UBERON:0010371!1.07e-09!73;UBERON:0000955!1.20e-09!47;UBERON:0006238!1.20e-09!47;UBERON:0002616!2.64e-09!46;UBERON:0002365!1.61e-08!25;UBERON:0002330!1.61e-08!25;UBERON:0000922!1.95e-08!320;UBERON:0003080!2.53e-08!40;UBERON:0000956!3.87e-08!21;UBERON:0001869!3.87e-08!21;UBERON:0000203!3.87e-08!21;UBERON:0002780!7.15e-08!39;UBERON:0001890!7.15e-08!39;UBERON:0006240!7.15e-08!39;UBERON:0003056!8.52e-08!49;UBERON:0002619!3.42e-07!17;UBERON:0002021!3.57e-07!10;UBERON:0000411!3.57e-07!10;UBERON:0001950!3.57e-07!10
}}
}}

Revision as of 19:06, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr13:36826295..36826316,-p2@Nrn1
Mm9::chr13:36826319..36826361,-p1@Nrn1
Mm9::chr3:120965789..120965840,-p2@Tmem56


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Cell Type
Ontology termp-valuen
CNS neuron (sensu Vertebrata)1.02e-0723
neuroblast (sensu Vertebrata)1.02e-0723

Uber Anatomy
Ontology termp-valuen
regional part of nervous system1.44e-1254
central nervous system2.84e-1273
gray matter4.78e-1234
nervous system6.46e-1275
neural tube1.26e-1152
neural rod1.26e-1152
future spinal cord1.26e-1152
neural keel1.26e-1152
ectoderm-derived structure5.13e-1195
ectoderm5.13e-1195
presumptive ectoderm5.13e-1195
anatomical conduit1.84e-10122
liver1.89e-1022
epithelial sac1.89e-1022
digestive gland1.89e-1022
epithelium of foregut-midgut junction1.89e-1022
anatomical boundary1.89e-1022
hepatobiliary system1.89e-1022
foregut-midgut junction1.89e-1022
hepatic diverticulum1.89e-1022
liver primordium1.89e-1022
septum transversum1.89e-1022
liver bud1.89e-1022
tube2.08e-10114
neurectoderm2.58e-1064
neural plate2.58e-1064
presumptive neural plate2.58e-1064
digestive tract diverticulum2.88e-1023
sac2.88e-1023
brain grey matter4.55e-1029
regional part of telencephalon4.55e-1029
telencephalon4.55e-1029
multi-cellular organism4.60e-10333
ecto-epithelium1.07e-0973
brain1.20e-0947
future brain1.20e-0947
regional part of brain2.64e-0946
exocrine gland1.61e-0825
exocrine system1.61e-0825
embryo1.95e-08320
anterior neural tube2.53e-0840
cerebral cortex3.87e-0821
cerebral hemisphere3.87e-0821
pallium3.87e-0821
regional part of forebrain7.15e-0839
forebrain7.15e-0839
future forebrain7.15e-0839
pre-chordal neural plate8.52e-0849
regional part of cerebral cortex3.42e-0717
occipital lobe3.57e-0710
visual cortex3.57e-0710
neocortex3.57e-0710


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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