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MCL coexpression mm9:384: Difference between revisions

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|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=CL:0000988!9.02e-20!32;CL:0002032!9.02e-20!32;CL:0000037!9.02e-20!32;CL:0000566!9.02e-20!32;CL:0000837!9.02e-20!32;CL:0002320!8.00e-14!46;CL:0000134!8.00e-14!46;CL:0000838!1.45e-12!12;CL:0000542!1.85e-11!13;CL:0000051!1.85e-11!13;CL:0002031!3.90e-11!25;CL:0000219!4.95e-11!54;CL:0000084!6.75e-11!11;CL:0000827!6.75e-11!11;CL:0000738!2.14e-10!17;CL:0002087!2.14e-10!17;CL:0000049!1.08e-09!19;CL:0000034!5.15e-09!97;CL:0002242!5.60e-09!16;CL:0000791!1.08e-07!9;CL:0000789!1.08e-07!9;CL:0002420!1.08e-07!9;CL:0002419!1.08e-07!9;CL:0000790!1.08e-07!9;CL:0000723!5.51e-07!91;CL:0000048!5.51e-07!91
|ontology_enrichment_disease=DOID:0060100!1.62e-07!3;DOID:4045!1.62e-07!3
|ontology_enrichment_uberon=UBERON:0002384!8.00e-14!46
}}
}}

Revision as of 20:36, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr11:60748854..60748872,-p@chr11:60748854..60748872
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Mm9::chr11:6447278..6447298,+p@chr11:6447278..6447298
+
Mm9::chr11:93858080..93858104,-p@chr11:93858080..93858104
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Mm9::chr12:103540615..103540625,-p@chr12:103540615..103540625
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Mm9::chr15:25840107..25840138,+p@chr15:25840107..25840138
+
Mm9::chr15:76029953..76029966,+p@chr15:76029953..76029966
+
Mm9::chr15:96485963..96485965,-p@chr15:96485963..96485965
-
Mm9::chr16:91485163..91485181,-p@chr16:91485163..91485181
-
Mm9::chr18:60661285..60661300,-p2@2010002N04Rik
Mm9::chr18:60661321..60661331,-p7@2010002N04Rik
Mm9::chr18:60661347..60661399,-p4@2010002N04Rik
Mm9::chr19:6297902..6297924,+p4@Ehd1
Mm9::chr1:145851272..145851285,-p1@Rgs2
Mm9::chr3:89884407..89884420,+p5@Tpm3
Mm9::chr5:109987964..109987975,-p2@Crlf2
Mm9::chr5:114395271..114395286,-p@chr5:114395271..114395286
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Mm9::chr5:31262543..31262555,-p3@Preb
Mm9::chr5:3494611..3494651,+p@chr5:3494611..3494651
+
Mm9::chr5:98460316..98460335,-p10@Antxr2
Mm9::chr7:29164115..29164120,-p@chr7:29164115..29164120
-


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Cell Type
Ontology termp-valuen
hematopoietic cell9.02e-2032
hematopoietic oligopotent progenitor cell9.02e-2032
hematopoietic stem cell9.02e-2032
angioblastic mesenchymal cell9.02e-2032
hematopoietic multipotent progenitor cell9.02e-2032
connective tissue cell8.00e-1446
mesenchymal cell8.00e-1446
lymphoid lineage restricted progenitor cell1.45e-1212
lymphocyte1.85e-1113
common lymphoid progenitor1.85e-1113
hematopoietic lineage restricted progenitor cell3.90e-1125
motile cell4.95e-1154
T cell6.75e-1111
pro-T cell6.75e-1111
leukocyte2.14e-1017
nongranular leukocyte2.14e-1017
common myeloid progenitor1.08e-0919
stem cell5.15e-0997
nucleate cell5.60e-0916
mature alpha-beta T cell1.08e-079
alpha-beta T cell1.08e-079
immature T cell1.08e-079
mature T cell1.08e-079
immature alpha-beta T cell1.08e-079
somatic stem cell5.51e-0791
multi fate stem cell5.51e-0791

Uber Anatomy
Ontology termp-valuen
connective tissue8.00e-1446

Disease
Ontology termp-valuen
musculoskeletal system cancer1.62e-073
muscle cancer1.62e-073


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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