Personal tools

MCL coexpression mm9:962: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 3: Line 3:
|coexpression_dpi_cluster_scores_median=0.032256856393288,0,0,0,0,0,0,0.6681701804925,0.405650992429202,0.381004399693277,0.177230224899924,0.0488097387351863,0.358391918090397,0.399896202325608,0,0.0800761525331175,0,0.411166798147301,0.274502502745681,0.430970888944806,0,0.0411126530948397,0.0503919447329045,0.0322275761868389,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113047926555807,0,0,0,0,0,0,0,0,0,0,0.895180152955226,0.236880264493592,0.428210788219066,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0158508717912236,0,0.110544086345426,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0500021512116835,0.0300545597055,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.249880268323079,0.102046789866422,0.196046625307351,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.180325425270187,0.0543101607623745,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0368139433955263,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0342545026818701,0,0,0,0,0,0.589493573221864,0.478425510726432,0.424032629003089,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0480053095083702,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
|coexpression_dpi_cluster_scores_median=0.032256856393288,0,0,0,0,0,0,0.6681701804925,0.405650992429202,0.381004399693277,0.177230224899924,0.0488097387351863,0.358391918090397,0.399896202325608,0,0.0800761525331175,0,0.411166798147301,0.274502502745681,0.430970888944806,0,0.0411126530948397,0.0503919447329045,0.0322275761868389,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113047926555807,0,0,0,0,0,0,0,0,0,0,0.895180152955226,0.236880264493592,0.428210788219066,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0158508717912236,0,0.110544086345426,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0500021512116835,0.0300545597055,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.249880268323079,0.102046789866422,0.196046625307351,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.180325425270187,0.0543101607623745,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0368139433955263,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0342545026818701,0,0,0,0,0,0.589493573221864,0.478425510726432,0.424032629003089,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0480053095083702,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=CL:0000988!6.52e-34!32;CL:0002032!6.52e-34!32;CL:0000037!6.52e-34!32;CL:0000566!6.52e-34!32;CL:0000837!6.52e-34!32;CL:0000838!2.24e-31!12;CL:0000542!9.21e-29!13;CL:0000051!9.21e-29!13;CL:0000084!1.62e-28!11;CL:0000827!1.62e-28!11;CL:0002031!2.15e-25!25;CL:0002320!1.65e-24!46;CL:0000134!1.65e-24!46;CL:0000791!3.54e-24!9;CL:0000789!3.54e-24!9;CL:0002420!3.54e-24!9;CL:0002419!3.54e-24!9;CL:0000790!3.54e-24!9;CL:0002242!6.99e-23!16;CL:0000219!4.35e-22!54;CL:0000624!1.74e-21!8;CL:0000738!2.21e-21!17;CL:0002087!2.21e-21!17;CL:0000893!2.90e-16!6;CL:0002489!2.90e-16!6;CL:0000898!2.90e-16!6;CL:0000809!2.90e-16!6;CL:0000810!2.90e-16!6;CL:0000895!2.90e-16!6;CL:0000808!2.90e-16!6;CL:0000894!2.90e-16!6;CL:0000806!2.90e-16!6;CL:0000807!2.90e-16!6;CL:0000805!2.90e-16!6;CL:0002425!2.90e-16!6;CL:0002436!2.90e-16!6;CL:0002427!2.90e-16!6;CL:0002428!2.90e-16!6;CL:0002429!2.90e-16!6;CL:0002433!2.90e-16!6;CL:0002431!2.90e-16!6;CL:0002432!2.90e-16!6;CL:0000034!5.05e-14!97;CL:0000723!4.82e-11!91;CL:0000048!4.82e-11!91;CL:0000049!3.34e-10!19;CL:0000548!1.51e-08!115;CL:0000255!1.51e-08!115;CL:0002371!3.38e-08!118;CL:0000553!9.43e-08!6;CL:0000556!9.43e-08!6
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0002384!1.65e-24!46;UBERON:0002193!7.64e-11!48;UBERON:0002405!7.64e-11!48;UBERON:0002390!6.97e-09!45;UBERON:0003061!6.97e-09!45
}}
}}

Revision as of 21:31, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr15:72970599..72970609,-p@chr15:72970599..72970609
-
Mm9::chr15:72985061..72985073,-p@chr15:72985061..72985073
-
Mm9::chr5:32001104..32001125,+p@chr5:32001104..32001125
+
Mm9::chr6:125418343..125418350,-p@chr6:125418343..125418350
-
Mm9::chr6:48650528..48650539,+p@chr6:48650528..48650539
+
Mm9::chr7:80684146..80684159,-p@chr7:80684146..80684159
-
Mm9::chr7:80684250..80684264,+p@chr7:80684250..80684264
+
Mm9::chr9:7872584..7872603,-p@chr9:7872584..7872603
-


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Cell Type
Ontology termp-valuen
hematopoietic cell6.52e-3432
hematopoietic oligopotent progenitor cell6.52e-3432
hematopoietic stem cell6.52e-3432
angioblastic mesenchymal cell6.52e-3432
hematopoietic multipotent progenitor cell6.52e-3432
lymphoid lineage restricted progenitor cell2.24e-3112
lymphocyte9.21e-2913
common lymphoid progenitor9.21e-2913
T cell1.62e-2811
pro-T cell1.62e-2811
hematopoietic lineage restricted progenitor cell2.15e-2525
connective tissue cell1.65e-2446
mesenchymal cell1.65e-2446
mature alpha-beta T cell3.54e-249
alpha-beta T cell3.54e-249
immature T cell3.54e-249
mature T cell3.54e-249
immature alpha-beta T cell3.54e-249
nucleate cell6.99e-2316
motile cell4.35e-2254
CD4-positive, alpha-beta T cell1.74e-218
leukocyte2.21e-2117
nongranular leukocyte2.21e-2117
thymocyte2.90e-166
double negative thymocyte2.90e-166
naive T cell2.90e-166
double-positive, alpha-beta thymocyte2.90e-166
CD4-positive, alpha-beta thymocyte2.90e-166
naive thymus-derived CD4-positive, alpha-beta T cell2.90e-166
DN4 thymocyte2.90e-166
DN1 thymic pro-T cell2.90e-166
DN2 thymocyte2.90e-166
DN3 thymocyte2.90e-166
immature single positive thymocyte2.90e-166
early T lineage precursor2.90e-166
mature CD4 single-positive thymocyte2.90e-166
resting double-positive thymocyte2.90e-166
double-positive blast2.90e-166
CD69-positive double-positive thymocyte2.90e-166
CD69-positive, CD4-positive single-positive thymocyte2.90e-166
CD4-positive, CD8-intermediate double-positive thymocyte2.90e-166
CD24-positive, CD4 single-positive thymocyte2.90e-166
stem cell5.05e-1497
somatic stem cell4.82e-1191
multi fate stem cell4.82e-1191
common myeloid progenitor3.34e-1019
animal cell1.51e-08115
eukaryotic cell1.51e-08115
somatic cell3.38e-08118
megakaryocyte progenitor cell9.43e-086
megakaryocyte9.43e-086

Uber Anatomy
Ontology termp-valuen
connective tissue1.65e-2446
hemolymphoid system7.64e-1148
immune system7.64e-1148
hematopoietic system6.97e-0945
blood island6.97e-0945


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MCL_coexpression_mm9:962&oldid=2156793"