Personal tools

Coexpression cluster:C4734: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 3: Line 3:
|full_id=C4734_Fibroblast_Smooth_Mesenchymal_Preadipocyte_Keratocytes_Chondrocyte_melanoma
|full_id=C4734_Fibroblast_Smooth_Mesenchymal_Preadipocyte_Keratocytes_Chondrocyte_melanoma
|id=C4734
|id=C4734
|ontology_enrichment_celltype=CL:0000055!2.64e-33!180;CL:0000057!6.82e-28!75;CL:0002371!2.83e-26!591;CL:0000144!7.88e-25!625;CL:0000548!6.69e-23!679;CL:0000004!6.69e-23!679;CL:0000255!6.69e-23!679;CL:0000012!3.95e-22!682;CL:0000048!4.63e-16!430;CL:0000723!5.95e-16!436;CL:0000222!3.84e-15!119;CL:0000034!4.62e-14!444;CL:0000003!9.74e-13!722;CL:0002620!1.29e-11!23;CL:0000680!4.39e-11!57;CL:0000056!4.39e-11!57;CL:0000355!4.39e-11!57;CL:0000183!4.60e-11!59;CL:0002057!2.43e-10!42;CL:0000860!2.72e-10!45;CL:0000187!3.94e-10!54;CL:0002320!5.66e-10!365;CL:0000063!1.63e-09!578;CL:0000192!5.07e-09!42;CL:0000514!5.07e-09!42;CL:0000134!6.79e-09!358;CL:0002009!8.63e-09!65;CL:0002194!1.31e-08!63;CL:0000576!1.31e-08!63;CL:0000040!1.31e-08!63;CL:0000559!1.31e-08!63;CL:0000557!6.78e-08!71;CL:0000220!9.00e-08!246;CL:0002334!1.70e-07!12;CL:0000393!2.07e-07!60;CL:0000211!2.07e-07!60;CL:0002321!2.40e-07!248;CL:0000219!4.56e-07!390;CL:0000839!4.65e-07!70
|ontology_enrichment_celltype=CL:0000057!3.82e-28!76;CL:0002371!1.18e-26!588;CL:0000548!1.17e-23!679;CL:0000255!1.17e-23!679;CL:0000048!1.04e-16!427;CL:0000723!1.29e-16!433;CL:0000222!9.27e-16!121;CL:0000034!1.50e-14!441;CL:0000003!5.74e-13!722;CL:0002620!2.72e-11!23;CL:0000680!3.51e-11!58;CL:0000056!3.51e-11!58;CL:0000355!3.51e-11!58;CL:0000183!5.69e-11!59;CL:0002320!2.94e-10!361;CL:0000187!3.03e-10!55;CL:0000860!5.19e-10!42;CL:0002057!5.19e-10!42;CL:0000473!9.60e-10!48;CL:0000234!9.60e-10!48;CL:0000134!2.73e-09!354;CL:0000192!2.92e-09!43;CL:0000514!2.92e-09!43;CL:0000055!1.49e-08!106;CL:0002009!3.03e-08!61;CL:0002194!4.67e-08!59;CL:0000576!4.67e-08!59;CL:0000040!4.67e-08!59;CL:0000559!4.67e-08!59;CL:0002334!1.09e-07!12;CL:0002321!1.23e-07!250;CL:0000393!1.98e-07!61;CL:0000211!1.98e-07!61;CL:0000219!2.12e-07!386;CL:0000557!3.73e-07!67
|ontology_enrichment_disease=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0002204!4.08e-23!167;UBERON:0000926!7.61e-20!448;UBERON:0004120!7.61e-20!448;UBERON:0006603!7.61e-20!448;UBERON:0003081!4.22e-16!216;UBERON:0000914!5.94e-15!83;UBERON:0002329!5.94e-15!83;UBERON:0003077!5.94e-15!83;UBERON:0003059!5.94e-15!83;UBERON:0007282!5.94e-15!83;UBERON:0009618!5.94e-15!83;UBERON:0007285!5.94e-15!83;UBERON:0000468!3.61e-14!659;UBERON:0000480!2.41e-13!626;UBERON:0004290!2.41e-13!70;UBERON:0000467!2.64e-13!625;UBERON:0000486!7.73e-13!82;UBERON:0004765!3.09e-12!101;UBERON:0001434!3.09e-12!101;UBERON:0002384!1.33e-10!375;UBERON:0003102!2.09e-10!95;UBERON:0001134!3.01e-10!61;UBERON:0002036!3.01e-10!61;UBERON:0003082!3.01e-10!61;UBERON:0001474!3.32e-10!86;UBERON:0004872!4.06e-10!84;UBERON:0000923!5.64e-10!604;UBERON:0005291!5.64e-10!604;UBERON:0006598!5.64e-10!604;UBERON:0002532!5.64e-10!604;UBERON:0002050!6.77e-10!605;UBERON:0005423!6.77e-10!605;UBERON:0001637!7.27e-10!42;UBERON:0003509!7.27e-10!42;UBERON:0004572!7.27e-10!42;UBERON:0001981!9.37e-10!60;UBERON:0007500!9.37e-10!60;UBERON:0004537!9.37e-10!60;UBERON:0006965!9.37e-10!60;UBERON:0002199!9.56e-10!45;UBERON:0002416!9.56e-10!45;UBERON:0002385!9.98e-10!63;UBERON:0001015!9.98e-10!63;UBERON:0000383!9.98e-10!63;UBERON:0002049!3.27e-09!79;UBERON:0007798!3.27e-09!79;UBERON:0002371!4.42e-09!80;UBERON:0000055!5.75e-09!69;UBERON:0005256!6.20e-09!143;UBERON:0002097!9.97e-09!40;UBERON:0000922!1.09e-08!612;UBERON:0004573!2.48e-08!33;UBERON:0004571!2.48e-08!33;UBERON:0002100!2.15e-07!216;UBERON:0003914!2.86e-07!118;UBERON:0004535!3.20e-07!110;UBERON:0001009!7.45e-07!113
|ontology_enrichment_uberon=UBERON:0000926!5.23e-23!315;UBERON:0004120!5.23e-23!315;UBERON:0006603!5.23e-23!315;UBERON:0002204!7.70e-23!167;UBERON:0007503!2.19e-14!78;UBERON:0003081!2.60e-14!203;UBERON:0002329!1.82e-13!71;UBERON:0003059!1.82e-13!71;UBERON:0007282!1.82e-13!71;UBERON:0004290!1.82e-13!71;UBERON:0009618!1.82e-13!71;UBERON:0007524!2.40e-13!73;UBERON:0000480!4.03e-13!625;UBERON:0000467!4.49e-13!624;UBERON:0000486!5.02e-13!83;UBERON:0003077!5.47e-13!72;UBERON:0007285!5.47e-13!72;UBERON:0000468!7.73e-13!656;UBERON:0001434!8.34e-12!100;UBERON:0002384!7.78e-11!371;UBERON:0001134!2.26e-10!62;UBERON:0002036!2.26e-10!62;UBERON:0003082!2.26e-10!62;UBERON:0004872!5.98e-10!83;UBERON:0001637!6.12e-10!42;UBERON:0003509!6.12e-10!42;UBERON:0004572!6.12e-10!42;UBERON:0002385!7.12e-10!64;UBERON:0001015!7.12e-10!64;UBERON:0000383!7.12e-10!64;UBERON:0002199!7.20e-10!46;UBERON:0002416!7.20e-10!46;UBERON:0003102!9.02e-10!99;UBERON:0007500!1.23e-09!59;UBERON:0001981!1.23e-09!59;UBERON:0004537!1.23e-09!59;UBERON:0006965!1.23e-09!59;UBERON:0004765!2.02e-09!90;UBERON:0001474!2.10e-09!82;UBERON:0002049!5.66e-09!78;UBERON:0007798!5.66e-09!78;UBERON:0002097!5.85e-09!41;UBERON:0000055!8.89e-09!68;UBERON:0004573!1.94e-08!33;UBERON:0004571!1.94e-08!33;UBERON:0002371!2.47e-08!76;UBERON:0000923!9.84e-08!560;UBERON:0010316!9.84e-08!560;UBERON:0005291!9.84e-08!560;UBERON:0006598!9.84e-08!560;UBERON:0010317!9.84e-08!560;UBERON:0002532!9.84e-08!560;UBERON:0002050!2.16e-07!564;UBERON:0003914!3.45e-07!117;UBERON:0000490!5.55e-07!148;UBERON:0005256!6.50e-07!122;UBERON:0005423!6.83e-07!581;UBERON:0004535!7.78e-07!109
|tf_chipseq_enrich=CCNT2#905;3:6.33620157696263:0.00393075003576489:0.0191252552054623!E2F6#1876;3:5.01715573169739:0.0079176980688633:0.0324471833868556!EGR1#1958;3:4.98817909481014:0.00805648813738344:0.0322614763460063!ETS1#2113;3:9.72876092220234:0.00108584009258484:0.00765622828986415!FOS#2353;3:8.9979553088944:0.00137249927241713:0.00902262551217804!MXI1#4601;3:9.9615716287593:0.00101147054125902:0.00723689606484558!MYC#4609;3:5.2222818716094:0.00702084375574015:0.0296190782438902!ZBTB7A#51341;3:7.3519093078759:0.00251625586028227:0.0140984573922757!ZNF263#10127;3:8.22184163701068:0.00179904392556587:0.0110173770694367
|tf_chipseq_enrich=CCNT2#905;3:6.33620157696263:0.00393075003576489:0.0191252552054623!E2F6#1876;3:5.01715573169739:0.0079176980688633:0.0324471833868556!EGR1#1958;3:4.98817909481014:0.00805648813738344:0.0322614763460063!ETS1#2113;3:9.72876092220234:0.00108584009258484:0.00765622828986415!FOS#2353;3:8.9979553088944:0.00137249927241713:0.00902262551217804!MXI1#4601;3:9.9615716287593:0.00101147054125902:0.00723689606484558!MYC#4609;3:5.2222818716094:0.00702084375574015:0.0296190782438902!ZBTB7A#51341;3:7.3519093078759:0.00251625586028227:0.0140984573922757!ZNF263#10127;3:8.22184163701068:0.00179904392556587:0.0110173770694367
|tfbs_overrepresentation=0.147255,0.0586687,0.716932,0.0477154,0.199763,0.287811,0.0430074,0.414564,0.03272,0.0257057,0.139423,0.225367,0.188771,0.125978,0.148679,0.0619003,0.140982,0.0982016,0.00142191,0.108057,0.188635,0.132577,0.081977,0.0948982,0.0415721,0.215492,0.209392,0.0907212,0.143747,0.0933697,0.204953,0.114046,0.0180314,0.208242,0.0665252,0.0844722,0.688181,0.0429682,0.120351,0.0667043,0.0964797,0.0246116,0.140039,0.184019,0.120917,0.0362416,0.0380166,0.18151,0.111283,0.121201,0.154071,0.0541794,0.0701653,0.0929951,0.198787,0.0384161,0.107455,5.34487e-06,0.0783235,0.105572,0.0294301,0.149417,0.000232379,0.0759481,0.054569,0.0504887,0.352278,0.0600088,0.0860723,0.167053,0.0126543,0.067678,0.089036,0.119383,0.00747605,0.0171177,0.0964936,0.0436945,0.0372495,0.00725252,0.0956287,0.226912,0.0425,0.114846,0.291327,0.0347684,0.064341,0.209032,0.0154619,0.062747,0.0857568,0.0495878,0.0953825,0.0473737,0.0853887,0.115028,0.0594776,0.153631,0.0927458,0.27413,0.0574857,0.276221,0.141874,0.0370665,0.219088,0.0409286,0.0669887,0.338096,0.144217,0.269326,0.182599,0.0339971,0.149552,0.0176855,0.101221,0.0337525,0.0203386,0.0566549,0.139021,0.0838393,0.16671,0.214708,0.140123,0.0857827,0.102368,0.176912,0.0906875,0.0147934,0.0843604,0.134932,0.0595773,0.0028727,0.0572164,0.0227861,0.125792,0.108101,4.78084e-05,0.0553359,0.0330399,0.00395526,0.022776,0.127606,0.203923,0.155998,0.00243119,0.0693171,0.0988228,0.0842275,0.0389418,0.120833,0.200647,0.143677,0.180712,0.0265818,0.0427088,0.117549,0.0747594,0.228385,0.0516985,0.0337251,0.227719,0.0952829,0.116642,0.147788,0.273479,0.114283,0.0400322,0.127369,0.0403542,0.312091,0.179689,0.137725,0.00384591,0.0541353,0.0799324,0.090079,0.140334,0.181817,0.178449,0.0356339,0.158844,0.122474,0.0274061,0.115574,0.0737247,0.118847,0.183031,0.0401756,0.0828697,0.173562,0.107145,0.0187509,0.122935,0.228812,0.112671,0.0470731,0.0782523,0.0602859,0.0676496,0.109673,0.0893019,0.060398,0.0308319,0.0606036,0.136451,0.259411,0.27358,0.15185,0.206299,0.178359,0.0458667,0.104357,0.121154,0.1129,0.312578,0.169057,0.164202,0.100942,0.062995,0.10299,2.0244e-05,0.37245,0.15606,0.161026,0.0738599,0.126611,0.138852,0.085973,0.060453,0.059896,0.0538541,0.0133328,0.0418404,0.0765029,0.0959204,0.0931946,0.0472272,0.263087,0.163502,0.214803,0.182472,0.348993,0.0983991,0.0830921,0.116283,0.136838,0.0815104,0.111647,0.372804,0.117027,0.159052,0.185164,0.185743,0.0980288,0.0980899,0.159674,0.107242,0.00161471,5.92399e-05,0.00206011,0.0619218,0.1751,0.163376,0.128096,0.0345133,0.0810678,0.0811639,0.0920653,0.118078,0.0755168,0.278352,0.063292,0.254773,0.446759,0.0865903,0.0380459,0.130174,0.584917,0.713218,0.198118,0.635872,0.563047,0.00210428,0.0263372,0.335423,0.0185583,0.261553,0.0222487,0.373681,0.00641099,0.49143,0.0619618,0.0146881,0.329568,0.178727,0.615744,0.271958,0.292154,0.405773,0.0148713,0.581713,0.230901,0.187251,0.362792,0.181715,0.423979,0.109988,0.330894,0.0257868,0.427027,0.376924,0.463191,0.647576,0.528324,0.520763,0.0792797,0.415647,0.00475652,0.253571,0.276829,0.00591608,0.0291592,0.316882,0.223503,0.0340949,0.603208,0.283727,0.314747,0.577664,0.0474194,0.448095,0.576651,0.416816,0.0478086,0.0280875,0.0210941,0.0807167,0.056723,0.608919,0.18237,0.0359955,0.00847576,0.0133926,0.275351,0.236471,0.185661,8.13568e-05,0.535598,0.270984,0.258117,0.155555,0.513852,0.0389686,0.248634,0.281576,0.472384,0.163244,0.0670502,0.0730934,0.184794,0.0641718,0.421596,0.0121151,0.0169683,0.00102656,0.188159,0.0477082,0.448039,0.218623,0.312808,0.333034,0.0451077,0.0747529,0.229003,0.0897888,0.223844,0.0338328,0.294698,0.34331,5.958e-05,0.0465597,0.327108,0.109738,0.0428373,0.00692297,0.00262586,0.228096,0.336314,0.19763,0.15631,0.0530502,0.104858,0.0293525,0.0181002,0.516462,0.858756,0.335105,0.144809,0.145539,0.0134194,0.0123475,0.119597,0.459928,0.0348837,0.152681,0.0465712,0.137098,0.259235,0.134788,0.0985856,0.00133722,0.293698,0.284593,0.343734,0.306556,0.0524121,0.000385108,0.155572,0.0391885,0.284629,0.262537,0.359455,0.226257,0.0965765,0.0175765,0.363685,0.464871,0.0538047,0.206222,0.525396,0.651524,0.437176,0.00407232,0.339277,0.192529,0.0439467,0.141758,0.455379,0.520495,0.159617,0.238587,0.00135387,0.0293409,0.189515,0.0891382,0.0595618,0.524997,0.625309,0.0688327,0.0439245,0.00966846,0.0277379,0.404569,0.273024,8.07012e-05,0.316179,0.0697683,0.0556835,0.192544,0.0779981,0.0575676,0.144322,0.223391,0.203656,0.442884,0.11631,0.191777,0.111931,0.28934,0.0435386,0.303336,0.126478,0.134852,0.10689,0.00427764,0.00201405,0.0129363,0.0179103,0.00605613,0.00461664,0.390395,0.0464827,0.00093131,0.114583,0.000206701,0.0899537,0.0866966,0.15983,0.107111,0.0438639,0.00389058,0.123593,0.129156,0.210369,0.193675,0.00934729,0.0499762,0.0828956,0.0666953,0.182185,0.111277,0.219383,0.332809,0.19559,0.132201,0.188694,0.0481795,0.199971,0.406014,0.127758,0.175785,0.184486,0.169234,0.0876426,0.0952322,0.0112557,0.222432,0.107043,0.275244,0.00481323,0.173708,0.141119,0.211595,0.0300692,0.131551,0.0445237,0.052362,0.0235128,0.153187,0.00327141,0.0974211,0.0135691,0.123526,0.0906475,0.0558058,0.00477066,0.00662343,0.137332,0.0145999,0.0656973,0.211746,0.220538,0.0801488,0.0757897,0.161801,0.193215,0.0549034,0.0779715,0.0561838,0.0417636,0.0345419,0.0388736,0.00340073,0.170307,0.201033,0.0488949,0.174921,0.370421,0.0330727,0.348757,0.02609,0.0394698,0.0596469,0.0178982,0.122476,0.108872,0.11002,0.26144,0.0286025,0.0470027,0.144567,0.038848,0.0874516,0.0550279,0.144067,0.253693,0.217069,0.190048,0.131088,0.090504,0.237101,0.286988,0.0761239,0.172491,0.0818785,0.182701,0.00836526,0.147698,0.000527702,0.167267,0.0103864,0.0889592,0.00643528,0.28711,0.0473033,0.094881,0.118532,0.132886,0.0774373,0.109194,0.128564,0.131452,0.112518,0.000381649,0.051838,0.0993999,0.0500365,0.061829,0.0755121,0.0936516,0.144075,0.0340203,0.0741807,0.0425274,0.047822,0.0926491,0.21727,0.289306,0.119215,0.192475,0.177967,0.188967,0.057571,0.047591,0.0143259,0.0608699,0.175319,0.300597,0.0713214,0.223874,0.291114,0.0355833,0.125606,0.175094,0.000919297,0.000581378,0.206454,0.218192,0.108277,0.0673484,0.108748,0.0494066,0.0958493,0.205732,0.0755808,0.045654,0.110216,0.070276,0.226171,0.153469,0.0376916,0.13262,0.0450031,0.0539144,0.114242,0.0929549,0.172425,0.104948,0.221645,0.057168,0.234298,0.0759837,0.0457643,0.152372,0.194941,0.218271,0.101607,0.327067,0.172982,0.340936,0.151597,0.0626744,0.191335,0.148574,0.504592,0.155821,0.0718905,0.0919008,0.00185183,0.144304,0.15063,0.0973823,0.15503,0.170295,0.193653,0.137219,0.228144,0.251466,0.288096,0.11903,0.0838874,0.331451,0.113145,0.112651,0.186638,0.01625,0.0948451,0.264079,0.249049,0.140533,0.0997756,0.0364628,0.103667,0.113069,0.025556,0.16791,0.09066,0.585505,0.166967,0.0013029,0.0813902,0.184948,0.156261,0.311847,0.511859,0.0590944,0.247324,0.178389,0.218229,0.231073,0.407281,0.000500398,0.0360851,0.412187,0.131093,0.0434602,0.133616,0.103051,0.36927,0.120614,0.407369,0.231447,0.00131394,0.0210947,0.37006,0.42622,0.120472,0.197484,0.0148336,0.36145,0.406019,0.0129,0.057779,0.276075,0.0198622,0.138468,0.390366,5.54033e-07,0.153829,0.443185,9.44643e-08,0.0608227,0.00516504,0.227104,0.518585,0.250246,0.0135352,0.284625,0.504757,0.04783,0.375373,0.28907,0.164197,0.128922,0.00506733,0.21103,0.0283889,0.00846715,0.468444,0.258219,0.446557,0.243383,0.191695,0.390974,0.000456298,3.92369e-07,0.161598,0.0527155,0.277094,0.0323708,0.0795555,0.37357,0.0203982,0.138234,0.069689,0.0508568,0.0175763,0.20342,0.200493,0.20558,0.300504,0.25656,0.425963,0.349197,0.383291,0.156104,0.141318,0.411941,0.0961477,0.314438,0.354789,0.163828,0.230581,0.120226,0.28424,0.562405,0.314429,0.181415,0.0442318,0.194707,0.0165273,0.408413,0.516511,0.322213,0.28903,0.33942,0.243065,0.00015663,0.522605,0.221908,0.180745,0.222037,0.416621,0.416292,0.128937,0.000454034,0.215157,0.204817,0.122646,0.138871,0.103502,1.45368e-06,0.19783,0.0833851,0.316453,0.48065,0.175199,0.332919,0.0120568,0.523625,0.408861,0.365487,0.534741,0.00169836,0.0758087,0.236011,0.203486,0.00428131,0.375787,0.119167,0.351067,0.275347,0.637444,0.305885,0.241132,0.371414,0.30666,0.303709,0.495883,0.0867777,0.508064,0.250964,0.383276,0.457886,0.0344603,0.220231,0.509064,0.196976,0.191517,0.463751,0.000387553,0.307334,0.0246928,0.283463,0.0102434,0.472935,0.399569,0.273281,0.0114705,0.275089,0.0858306,0.47795,0.359231,0.339729,0.197805,0.0690807,0.387069,0.332774,0.173874,0.299887,0.266492,0.205413,0.17639,0.0779009,0.276869,0.205298,0.0337138,0.18966,0.258854,0.188263,0.0719199,0.264884,0.162568,0.19104,0.163057,0.219428,0.208013,0.0900729,0.0953646,0.166124,0.252184,0.378361,0.255516,0.20753,0.447185,0.179412,0.193601,0.220904,0.222977,0.341681,0.310674,0.21801,0.198614,0.186804,0.123324,0.199468,0.0325925,0.0933115,0.12405,0.179889,0.226869,0.0430576,0.0855609,0.131118,0.20837,0.247588,0.222339,0.0673329,0.00178902,0.0391817,0.113092,0.145701,0.229428,0.162145,0.228955,0.168748,0.0384949,0.0660995,0.0521984,0.0455518,0.268741,0.201602,0.0701861,0.000701257,0.120196,0.0986735,0.108462,0.0595618,0.21593,0.158479,0.220319,0.195218,0.124213,0.259632,0.30793,0.180606,0.159884,0.257294,0.150733,0.217112,0.123917,0.184317,0.185335,0.0723291,0.258496,0.0377094,0.203781,0.21382,0.207559,0.141867,0.193031,0.249101,0.115972,0.224568,0.246105,0.173026,0.200432,0.139785,0.197112,0.240478,0.156465,0.13108,0.036274,0.222798,0.172134,0.176789,0.0969345,0.202137,0.310405,0.280943,0.218161,0.0822373,0.202065,0.106739,0.0536053,0.0537737,0.15113,0.078016,0.0407233,0.0537355,0.319922,0.261724,0.211332,0.187731,0.233626,0.189559,0.0812887,0.0981146,0.064145,0.121913,0.0638699,0.104603,0.0663259,0.0762523,0.128736,0.109171,0.04411,0.066952,0.089609,0.0367455,0.13497,0.204393,0.295769,0.286691,0.347036,0.141729,0.0037817,0.255956,0.200105,0.227491,0.00569858,0.253509,0.177664,0.28365,0.264413,0.131761,0.160658,0.206239,0.19924,0.28689,0.236464,0.325148,0.115817,0.218052,0.223831,0.11528,0.194982,0.190993,0.00472154,0.283218,0.249955,0.164638,0.0272695,0.000146866,0.327622,0.225752,0.207791,0.0958756,0.0859274,3.07111e-06,0.171683,0.158847,0.271275,0.071111,0.270604,0.101021,0.222548,0.0164735,0.157274,0.215705,0.252796,0.205954,0.361435
|tfbs_overrepresentation=0.147255,0.0586687,0.716932,0.0477154,0.199763,0.287811,0.0430074,0.414564,0.03272,0.0257057,0.139423,0.225367,0.188771,0.125978,0.148679,0.0619003,0.140982,0.0982016,0.00142191,0.108057,0.188635,0.132577,0.081977,0.0948982,0.0415721,0.215492,0.209392,0.0907212,0.143747,0.0933697,0.204953,0.114046,0.0180314,0.208242,0.0665252,0.0844722,0.688181,0.0429682,0.120351,0.0667043,0.0964797,0.0246116,0.140039,0.184019,0.120917,0.0362416,0.0380166,0.18151,0.111283,0.121201,0.154071,0.0541794,0.0701653,0.0929951,0.198787,0.0384161,0.107455,5.34487e-06,0.0783235,0.105572,0.0294301,0.149417,0.000232379,0.0759481,0.054569,0.0504887,0.352278,0.0600088,0.0860723,0.167053,0.0126543,0.067678,0.089036,0.119383,0.00747605,0.0171177,0.0964936,0.0436945,0.0372495,0.00725252,0.0956287,0.226912,0.0425,0.114846,0.291327,0.0347684,0.064341,0.209032,0.0154619,0.062747,0.0857568,0.0495878,0.0953825,0.0473737,0.0853887,0.115028,0.0594776,0.153631,0.0927458,0.27413,0.0574857,0.276221,0.141874,0.0370665,0.219088,0.0409286,0.0669887,0.338096,0.144217,0.269326,0.182599,0.0339971,0.149552,0.0176855,0.101221,0.0337525,0.0203386,0.0566549,0.139021,0.0838393,0.16671,0.214708,0.140123,0.0857827,0.102368,0.176912,0.0906875,0.0147934,0.0843604,0.134932,0.0595773,0.0028727,0.0572164,0.0227861,0.125792,0.108101,4.78084e-05,0.0553359,0.0330399,0.00395526,0.022776,0.127606,0.203923,0.155998,0.00243119,0.0693171,0.0988228,0.0842275,0.0389418,0.120833,0.200647,0.143677,0.180712,0.0265818,0.0427088,0.117549,0.0747594,0.228385,0.0516985,0.0337251,0.227719,0.0952829,0.116642,0.147788,0.273479,0.114283,0.0400322,0.127369,0.0403542,0.312091,0.179689,0.137725,0.00384591,0.0541353,0.0799324,0.090079,0.140334,0.181817,0.178449,0.0356339,0.158844,0.122474,0.0274061,0.115574,0.0737247,0.118847,0.183031,0.0401756,0.0828697,0.173562,0.107145,0.0187509,0.122935,0.228812,0.112671,0.0470731,0.0782523,0.0602859,0.0676496,0.109673,0.0893019,0.060398,0.0308319,0.0606036,0.136451,0.259411,0.27358,0.15185,0.206299,0.178359,0.0458667,0.104357,0.121154,0.1129,0.312578,0.169057,0.164202,0.100942,0.062995,0.10299,2.0244e-05,0.37245,0.15606,0.161026,0.0738599,0.126611,0.138852,0.085973,0.060453,0.059896,0.0538541,0.0133328,0.0418404,0.0765029,0.0959204,0.0931946,0.0472272,0.263087,0.163502,0.214803,0.182472,0.348993,0.0983991,0.0830921,0.116283,0.136838,0.0815104,0.111647,0.372804,0.117027,0.159052,0.185164,0.185743,0.0980288,0.0980899,0.159674,0.107242,0.00161471,5.92399e-05,0.00206011,0.0619218,0.1751,0.163376,0.128096,0.0345133,0.0810678,0.0811639,0.0920653,0.118078,0.0755168,0.278352,0.063292,0.254773,0.446759,0.0865903,0.0380459,0.130174,0.584917,0.713218,0.198118,0.635872,0.563047,0.00210428,0.0263372,0.335423,0.0185583,0.261553,0.0222487,0.373681,0.00641099,0.49143,0.0619618,0.0146881,0.329568,0.178727,0.615744,0.271958,0.292154,0.405773,0.0148713,0.581713,0.230901,0.187251,0.362792,0.181715,0.423979,0.109988,0.330894,0.0257868,0.427027,0.376924,0.463191,0.647576,0.528324,0.520763,0.0792797,0.415647,0.00475652,0.253571,0.276829,0.00591608,0.0291592,0.316882,0.223503,0.0340949,0.603208,0.283727,0.314747,0.577664,0.0474194,0.448095,0.576651,0.416816,0.0478086,0.0280875,0.0210941,0.0807167,0.056723,0.608919,0.18237,0.0359955,0.00847576,0.0133926,0.275351,0.236471,0.185661,8.13568e-05,0.535598,0.270984,0.258117,0.155555,0.513852,0.0389686,0.248634,0.281576,0.472384,0.163244,0.0670502,0.0730934,0.184794,0.0641718,0.421596,0.0121151,0.0169683,0.00102656,0.188159,0.0477082,0.448039,0.218623,0.312808,0.333034,0.0451077,0.0747529,0.229003,0.0897888,0.223844,0.0338328,0.294698,0.34331,5.958e-05,0.0465597,0.327108,0.109738,0.0428373,0.00692297,0.00262586,0.228096,0.336314,0.19763,0.15631,0.0530502,0.104858,0.0293525,0.0181002,0.516462,0.858756,0.335105,0.144809,0.145539,0.0134194,0.0123475,0.119597,0.459928,0.0348837,0.152681,0.0465712,0.137098,0.259235,0.134788,0.0985856,0.00133722,0.293698,0.284593,0.343734,0.306556,0.0524121,0.000385108,0.155572,0.0391885,0.284629,0.262537,0.359455,0.226257,0.0965765,0.0175765,0.363685,0.464871,0.0538047,0.206222,0.525396,0.651524,0.437176,0.00407232,0.339277,0.192529,0.0439467,0.141758,0.455379,0.520495,0.159617,0.238587,0.00135387,0.0293409,0.189515,0.0891382,0.0595618,0.524997,0.625309,0.0688327,0.0439245,0.00966846,0.0277379,0.404569,0.273024,8.07012e-05,0.316179,0.0697683,0.0556835,0.192544,0.0779981,0.0575676,0.144322,0.223391,0.203656,0.442884,0.11631,0.191777,0.111931,0.28934,0.0435386,0.303336,0.126478,0.134852,0.10689,0.00427764,0.00201405,0.0129363,0.0179103,0.00605613,0.00461664,0.390395,0.0464827,0.00093131,0.114583,0.000206701,0.0899537,0.0866966,0.15983,0.107111,0.0438639,0.00389058,0.123593,0.129156,0.210369,0.193675,0.00934729,0.0499762,0.0828956,0.0666953,0.182185,0.111277,0.219383,0.332809,0.19559,0.132201,0.188694,0.0481795,0.199971,0.406014,0.127758,0.175785,0.184486,0.169234,0.0876426,0.0952322,0.0112557,0.222432,0.107043,0.275244,0.00481323,0.173708,0.141119,0.211595,0.0300692,0.131551,0.0445237,0.052362,0.0235128,0.153187,0.00327141,0.0974211,0.0135691,0.123526,0.0906475,0.0558058,0.00477066,0.00662343,0.137332,0.0145999,0.0656973,0.211746,0.220538,0.0801488,0.0757897,0.161801,0.193215,0.0549034,0.0779715,0.0561838,0.0417636,0.0345419,0.0388736,0.00340073,0.170307,0.201033,0.0488949,0.174921,0.370421,0.0330727,0.348757,0.02609,0.0394698,0.0596469,0.0178982,0.122476,0.108872,0.11002,0.26144,0.0286025,0.0470027,0.144567,0.038848,0.0874516,0.0550279,0.144067,0.253693,0.217069,0.190048,0.131088,0.090504,0.237101,0.286988,0.0761239,0.172491,0.0818785,0.182701,0.00836526,0.147698,0.000527702,0.167267,0.0103864,0.0889592,0.00643528,0.28711,0.0473033,0.094881,0.118532,0.132886,0.0774373,0.109194,0.128564,0.131452,0.112518,0.000381649,0.051838,0.0993999,0.0500365,0.061829,0.0755121,0.0936516,0.144075,0.0340203,0.0741807,0.0425274,0.047822,0.0926491,0.21727,0.289306,0.119215,0.192475,0.177967,0.188967,0.057571,0.047591,0.0143259,0.0608699,0.175319,0.300597,0.0713214,0.223874,0.291114,0.0355833,0.125606,0.175094,0.000919297,0.000581378,0.206454,0.218192,0.108277,0.0673484,0.108748,0.0494066,0.0958493,0.205732,0.0755808,0.045654,0.110216,0.070276,0.226171,0.153469,0.0376916,0.13262,0.0450031,0.0539144,0.114242,0.0929549,0.172425,0.104948,0.221645,0.057168,0.234298,0.0759837,0.0457643,0.152372,0.194941,0.218271,0.101607,0.327067,0.172982,0.340936,0.151597,0.0626744,0.191335,0.148574,0.504592,0.155821,0.0718905,0.0919008,0.00185183,0.144304,0.15063,0.0973823,0.15503,0.170295,0.193653,0.137219,0.228144,0.251466,0.288096,0.11903,0.0838874,0.331451,0.113145,0.112651,0.186638,0.01625,0.0948451,0.264079,0.249049,0.140533,0.0997756,0.0364628,0.103667,0.113069,0.025556,0.16791,0.09066,0.585505,0.166967,0.0013029,0.0813902,0.184948,0.156261,0.311847,0.511859,0.0590944,0.247324,0.178389,0.218229,0.231073,0.407281,0.000500398,0.0360851,0.412187,0.131093,0.0434602,0.133616,0.103051,0.36927,0.120614,0.407369,0.231447,0.00131394,0.0210947,0.37006,0.42622,0.120472,0.197484,0.0148336,0.36145,0.406019,0.0129,0.057779,0.276075,0.0198622,0.138468,0.390366,5.54033e-07,0.153829,0.443185,9.44643e-08,0.0608227,0.00516504,0.227104,0.518585,0.250246,0.0135352,0.284625,0.504757,0.04783,0.375373,0.28907,0.164197,0.128922,0.00506733,0.21103,0.0283889,0.00846715,0.468444,0.258219,0.446557,0.243383,0.191695,0.390974,0.000456298,3.92369e-07,0.161598,0.0527155,0.277094,0.0323708,0.0795555,0.37357,0.0203982,0.138234,0.069689,0.0508568,0.0175763,0.20342,0.200493,0.20558,0.300504,0.25656,0.425963,0.349197,0.383291,0.156104,0.141318,0.411941,0.0961477,0.314438,0.354789,0.163828,0.230581,0.120226,0.28424,0.562405,0.314429,0.181415,0.0442318,0.194707,0.0165273,0.408413,0.516511,0.322213,0.28903,0.33942,0.243065,0.00015663,0.522605,0.221908,0.180745,0.222037,0.416621,0.416292,0.128937,0.000454034,0.215157,0.204817,0.122646,0.138871,0.103502,1.45368e-06,0.19783,0.0833851,0.316453,0.48065,0.175199,0.332919,0.0120568,0.523625,0.408861,0.365487,0.534741,0.00169836,0.0758087,0.236011,0.203486,0.00428131,0.375787,0.119167,0.351067,0.275347,0.637444,0.305885,0.241132,0.371414,0.30666,0.303709,0.495883,0.0867777,0.508064,0.250964,0.383276,0.457886,0.0344603,0.220231,0.509064,0.196976,0.191517,0.463751,0.000387553,0.307334,0.0246928,0.283463,0.0102434,0.472935,0.399569,0.273281,0.0114705,0.275089,0.0858306,0.47795,0.359231,0.339729,0.197805,0.0690807,0.387069,0.332774,0.173874,0.299887,0.266492,0.205413,0.17639,0.0779009,0.276869,0.205298,0.0337138,0.18966,0.258854,0.188263,0.0719199,0.264884,0.162568,0.19104,0.163057,0.219428,0.208013,0.0900729,0.0953646,0.166124,0.252184,0.378361,0.255516,0.20753,0.447185,0.179412,0.193601,0.220904,0.222977,0.341681,0.310674,0.21801,0.198614,0.186804,0.123324,0.199468,0.0325925,0.0933115,0.12405,0.179889,0.226869,0.0430576,0.0855609,0.131118,0.20837,0.247588,0.222339,0.0673329,0.00178902,0.0391817,0.113092,0.145701,0.229428,0.162145,0.228955,0.168748,0.0384949,0.0660995,0.0521984,0.0455518,0.268741,0.201602,0.0701861,0.000701257,0.120196,0.0986735,0.108462,0.0595618,0.21593,0.158479,0.220319,0.195218,0.124213,0.259632,0.30793,0.180606,0.159884,0.257294,0.150733,0.217112,0.123917,0.184317,0.185335,0.0723291,0.258496,0.0377094,0.203781,0.21382,0.207559,0.141867,0.193031,0.249101,0.115972,0.224568,0.246105,0.173026,0.200432,0.139785,0.197112,0.240478,0.156465,0.13108,0.036274,0.222798,0.172134,0.176789,0.0969345,0.202137,0.310405,0.280943,0.218161,0.0822373,0.202065,0.106739,0.0536053,0.0537737,0.15113,0.078016,0.0407233,0.0537355,0.319922,0.261724,0.211332,0.187731,0.233626,0.189559,0.0812887,0.0981146,0.064145,0.121913,0.0638699,0.104603,0.0663259,0.0762523,0.128736,0.109171,0.04411,0.066952,0.089609,0.0367455,0.13497,0.204393,0.295769,0.286691,0.347036,0.141729,0.0037817,0.255956,0.200105,0.227491,0.00569858,0.253509,0.177664,0.28365,0.264413,0.131761,0.160658,0.206239,0.19924,0.28689,0.236464,0.325148,0.115817,0.218052,0.223831,0.11528,0.194982,0.190993,0.00472154,0.283218,0.249955,0.164638,0.0272695,0.000146866,0.327622,0.225752,0.207791,0.0958756,0.0859274,3.07111e-06,0.171683,0.158847,0.271275,0.071111,0.270604,0.101021,0.222548,0.0164735,0.157274,0.215705,0.252796,0.205954,0.361435
}}
}}

Revision as of 16:12, 19 October 2012


Full id: C4734_Fibroblast_Smooth_Mesenchymal_Preadipocyte_Keratocytes_Chondrocyte_melanoma



Phase1 CAGE Peaks

Hg19::chr8:145025046..145025061,-p7@PLEC
Hg19::chr8:145025063..145025073,-p16@PLEC
Hg19::chr8:145025074..145025102,-p2@PLEC


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

No results for this coexpression

Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data

No GOStat results

Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Cell Type
Ontology termp-valuen
fibroblast3.82e-2876
somatic cell1.18e-26588
animal cell1.17e-23679
eukaryotic cell1.17e-23679
multi fate stem cell1.04e-16427
somatic stem cell1.29e-16433
mesodermal cell9.27e-16121
stem cell1.50e-14441
native cell5.74e-13722
skin fibroblast2.72e-1123
muscle precursor cell3.51e-1158
myoblast3.51e-1158
multi-potent skeletal muscle stem cell3.51e-1158
contractile cell5.69e-1159
connective tissue cell2.94e-10361
muscle cell3.03e-1055
classical monocyte5.19e-1042
CD14-positive, CD16-negative classical monocyte5.19e-1042
defensive cell9.60e-1048
phagocyte9.60e-1048
mesenchymal cell2.73e-09354
smooth muscle cell2.92e-0943
smooth muscle myoblast2.92e-0943
non-terminally differentiated cell1.49e-08106
macrophage dendritic cell progenitor3.03e-0861
monopoietic cell4.67e-0859
monocyte4.67e-0859
monoblast4.67e-0859
promonocyte4.67e-0859
preadipocyte1.09e-0712
embryonic cell1.23e-07250
electrically responsive cell1.98e-0761
electrically active cell1.98e-0761
motile cell2.12e-07386
granulocyte monocyte progenitor cell3.73e-0767
Uber Anatomy
Ontology termp-valuen
mesoderm5.23e-23315
mesoderm-derived structure5.23e-23315
presumptive mesoderm5.23e-23315
musculoskeletal system7.70e-23167
epithelial vesicle2.19e-1478
lateral plate mesoderm2.60e-14203
somite1.82e-1371
presomitic mesoderm1.82e-1371
presumptive segmental plate1.82e-1371
dermomyotome1.82e-1371
trunk paraxial mesoderm1.82e-1371
dense mesenchyme tissue2.40e-1373
anatomical group4.03e-13625
anatomical system4.49e-13624
multilaminar epithelium5.02e-1383
paraxial mesoderm5.47e-1372
presumptive paraxial mesoderm5.47e-1372
multi-cellular organism7.73e-13656
skeletal system8.34e-12100
connective tissue7.78e-11371
skeletal muscle tissue2.26e-1062
striated muscle tissue2.26e-1062
myotome2.26e-1062
splanchnic layer of lateral plate mesoderm5.98e-1083
artery6.12e-1042
arterial blood vessel6.12e-1042
arterial system6.12e-1042
muscle tissue7.12e-1064
musculature7.12e-1064
musculature of body7.12e-1064
integument7.20e-1046
integumental system7.20e-1046
surface structure9.02e-1099
epithelial tube open at both ends1.23e-0959
blood vessel1.23e-0959
blood vasculature1.23e-0959
vascular cord1.23e-0959
skeletal element2.02e-0990
bone element2.10e-0982
vasculature5.66e-0978
vascular system5.66e-0978
skin of body5.85e-0941
vessel8.89e-0968
systemic artery1.94e-0833
systemic arterial system1.94e-0833
bone marrow2.47e-0876
germ layer9.84e-08560
germ layer / neural crest9.84e-08560
embryonic tissue9.84e-08560
presumptive structure9.84e-08560
germ layer / neural crest derived structure9.84e-08560
epiblast (generic)9.84e-08560
embryonic structure2.16e-07564
epithelial tube3.45e-07117
unilaminar epithelium5.55e-07148
trunk mesenchyme6.50e-07122
developing anatomical structure6.83e-07581
cardiovascular system7.78e-07109


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs



JASPAR motifs

Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}



ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data

(#promoters = Number of promoters in this coexpression cluster that have ChIP signal of the TF)

TF#promotersEnrichmentp-valueq-value
CCNT2#90536.336201576962630.003930750035764890.0191252552054623
E2F6#187635.017155731697390.00791769806886330.0324471833868556
EGR1#195834.988179094810140.008056488137383440.0322614763460063
ETS1#211339.728760922202340.001085840092584840.00765622828986415
FOS#235338.99795530889440.001372499272417130.00902262551217804
MXI1#460139.96157162875930.001011470541259020.00723689606484558
MYC#460935.22228187160940.007020843755740150.0296190782438902
ZBTB7A#5134137.35190930787590.002516255860282270.0140984573922757
ZNF263#1012738.221841637010680.001799043925565870.0110173770694367



Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data

This analysis result is provided for C0 - C305 clusters.

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=Coexpression_cluster:C4734&oldid=2251098"