Coexpression cluster:C82

Full id: C82_Basophils_CD14_Eosinophils_Natural_Peripheral_immature_CD34

Phase1 CAGE Peaks

Hg19::chr10:104533977..104533990,+	p@chr10:104533977..104533990 +
Hg19::chr10:104545681..104545697,-	p@chr10:104545681..104545697 -
Hg19::chr10:104545870..104545915,+	p@chr10:104545870..104545915 +
Hg19::chr10:126369470..126369475,+	p@chr10:126369470..126369475 +
Hg19::chr10:129681159..129681175,-	p@chr10:129681159..129681175 -
Hg19::chr10:17066097..17066134,+	p@chr10:17066097..17066134 +
Hg19::chr10:17067634..17067645,-	p@chr10:17067634..17067645 -
Hg19::chr10:17067824..17067836,+	p@chr10:17067824..17067836 +
Hg19::chr10:17067890..17067913,+	p@chr10:17067890..17067913 +
Hg19::chr10:17069000..17069014,+	p@chr10:17069000..17069014 +
Hg19::chr10:17242471..17242477,-	p@chr10:17242471..17242477 -
Hg19::chr10:17242512..17242523,-	p9@TRDMT1
Hg19::chr10:17242530..17242542,-	p4@TRDMT1
Hg19::chr10:17242613..17242631,+	p@chr10:17242613..17242631 +
Hg19::chr10:17243340..17243355,-	p3@TRDMT1
Hg19::chr10:17243357..17243399,-	p2@TRDMT1
Hg19::chr10:17243514..17243535,+	p@chr10:17243514..17243535 +
Hg19::chr10:20293370..20293386,+	p@chr10:20293370..20293386 +
Hg19::chr10:3847396..3847414,-	p@chr10:3847396..3847414 -
Hg19::chr10:3847416..3847430,-	p@chr10:3847416..3847430 -
Hg19::chr10:3916000..3916035,-	p@chr10:3916000..3916035 -
Hg19::chr10:48482237..48482242,-	p@chr10:48482237..48482242 -
Hg19::chr10:48482432..48482435,+	p@chr10:48482432..48482435 +
Hg19::chr10:60144114..60144139,+	p@chr10:60144114..60144139 +
Hg19::chr10:64380497..64380512,-	p@chr10:64380497..64380512 -
Hg19::chr10:64392525..64392540,+	p@chr10:64392525..64392540 +
Hg19::chr10:65029140..65029162,+	p@chr10:65029140..65029162 +
Hg19::chr11:129920426..129920430,+	p@chr11:129920426..129920430 +
Hg19::chr11:35104964..35104990,-	p@chr11:35104964..35104990 -
Hg19::chr11:35104993..35104996,-	p@chr11:35104993..35104996 -
Hg19::chr11:35105636..35105686,+	p@chr11:35105636..35105686 +
Hg19::chr11:60157278..60157288,+	p@chr11:60157278..60157288 +
Hg19::chr11:60930092..60930106,-	p@chr11:60930092..60930106 -
Hg19::chr11:61185177..61185189,-	p@chr11:61185177..61185189 -
Hg19::chr11:62321001..62321030,-	p@chr11:62321001..62321030 -
Hg19::chr11:63335017..63335035,+	p@chr11:63335017..63335035 +
Hg19::chr11:63335039..63335063,+	p@chr11:63335039..63335063 +
Hg19::chr12:109232410..109232427,+	p@chr12:109232410..109232427 +
Hg19::chr12:116893709..116893733,+	p@chr12:116893709..116893733 +
Hg19::chr12:121739938..121739950,+	p@chr12:121739938..121739950 +
Hg19::chr12:13250508..13250515,+	p@chr12:13250508..13250515 +
Hg19::chr12:29317815..29317846,-	p@chr12:29317815..29317846 -
Hg19::chr12:29317948..29317994,+	p@chr12:29317948..29317994 +
Hg19::chr12:53267915..53267928,-	p@chr12:53267915..53267928 -
Hg19::chr12:53267946..53267974,-	p@chr12:53267946..53267974 -
Hg19::chr12:53267977..53268036,-	p@chr12:53267977..53268036 -
Hg19::chr12:54807344..54807366,+	p@chr12:54807344..54807366 +
Hg19::chr12:68753216..68753232,+	p@chr12:68753216..68753232 +
Hg19::chr12:68758900..68758911,+	p@chr12:68758900..68758911 +
Hg19::chr12:68758939..68758961,-	p@chr12:68758939..68758961 -
Hg19::chr12:68758975..68758989,-	p@chr12:68758975..68758989 -
Hg19::chr12:68759286..68759299,+	p@chr12:68759286..68759299 +
Hg19::chr12:68759388..68759416,+	p@chr12:68759388..68759416 +
Hg19::chr12:68761672..68761683,-	p@chr12:68761672..68761683 -
Hg19::chr12:68761695..68761731,-	p@chr12:68761695..68761731 -
Hg19::chr12:76414859..76414885,+	p@chr12:76414859..76414885 +
Hg19::chr12:89560326..89560337,-	p@chr12:89560326..89560337 -
Hg19::chr12:89560342..89560372,-	p@chr12:89560342..89560372 -
Hg19::chr12:89847483..89847491,-	p@chr12:89847483..89847491 -
Hg19::chr13:42031316..42031325,-	p@chr13:42031316..42031325 -
Hg19::chr13:42031350..42031392,-	p@chr13:42031350..42031392 -
Hg19::chr13:49227910..49227937,+	p2@CYSLTR2
Hg19::chr13:99973121..99973130,-	p@chr13:99973121..99973130 -
Hg19::chr14:105948312..105948345,-	p@chr14:105948312..105948345 -
Hg19::chr14:105948473..105948498,+	p@chr14:105948473..105948498 +
Hg19::chr14:105954077..105954084,-	p@chr14:105954077..105954084 -
Hg19::chr14:50468469..50468481,+	p@chr14:50468469..50468481 +
Hg19::chr14:52794067..52794110,-	p@chr14:52794067..52794110 -
Hg19::chr14:55592226..55592231,-	p@chr14:55592226..55592231 -
Hg19::chr14:55770925..55770967,+	p@chr14:55770925..55770967 +
Hg19::chr14:73603644..73603653,-	p@chr14:73603644..73603653 -
Hg19::chr14:91830519..91830529,-	p@chr14:91830519..91830529 -
Hg19::chr15:39719330..39719335,-	p6@ENST00000558209
Hg19::chr15:39719343..39719357,-	p1@ENST00000558209
Hg19::chr15:39719744..39719763,+	p@chr15:39719744..39719763 +
Hg19::chr15:50358642..50358649,+	p@chr15:50358642..50358649 +
Hg19::chr15:50358665..50358679,+	p@chr15:50358665..50358679 +
Hg19::chr15:50358693..50358704,+	p@chr15:50358693..50358704 +
Hg19::chr15:50358999..50359010,+	p@chr15:50358999..50359010 +
Hg19::chr15:67383912..67383927,+	p@chr15:67383912..67383927 +
Hg19::chr15:86127558..86127582,+	p@chr15:86127558..86127582 +
Hg19::chr15:90944179..90944225,-	p@chr15:90944179..90944225 -
Hg19::chr15:90944315..90944326,+	p@chr15:90944315..90944326 +
Hg19::chr15:90944341..90944373,+	p@chr15:90944341..90944373 +
Hg19::chr16:17474619..17474656,-	p@chr16:17474619..17474656 -
Hg19::chr16:29129822..29129845,-	p@chr16:29129822..29129845 -
Hg19::chr17:62097580..62097601,+	p@chr17:62097580..62097601 +
Hg19::chr17:7036113..7036124,-	p@chr17:7036113..7036124 -
Hg19::chr18:11850875..11850895,-	p@chr18:11850875..11850895 -
Hg19::chr18:74820004..74820024,-	p@chr18:74820004..74820024 -
Hg19::chr18:74820075..74820091,-	p@chr18:74820075..74820091 -
Hg19::chr18:74820100..74820105,+	p@chr18:74820100..74820105 +
Hg19::chr19:41834142..41834168,+	p@chr19:41834142..41834168 +
Hg19::chr19:45240164..45240191,+	p@chr19:45240164..45240191 +
Hg19::chr19:52320046..52320049,-	p@chr19:52320046..52320049 -
Hg19::chr19:6057689..6057699,+	p@chr19:6057689..6057699 +
Hg19::chr19:6062331..6062346,-	p@chr19:6062331..6062346 -
Hg19::chr19:6062387..6062398,-	p@chr19:6062387..6062398 -
Hg19::chr19:6062453..6062457,-	p@chr19:6062453..6062457 -
Hg19::chr19:6066092..6066109,+	p@chr19:6066092..6066109 +
Hg19::chr1:109133646..109133666,-	p@chr1:109133646..109133666 -
Hg19::chr1:109133864..109133905,+	p@chr1:109133864..109133905 +
Hg19::chr1:109134776..109134796,-	p@chr1:109134776..109134796 -
Hg19::chr1:112050102..112050112,-	p@chr1:112050102..112050112 -
Hg19::chr1:114473251..114473289,-	p@chr1:114473251..114473289 -
Hg19::chr1:12239173..12239198,-	p@chr1:12239173..12239198 -
Hg19::chr1:12662045..12662059,-	p@chr1:12662045..12662059 -
Hg19::chr1:151913598..151913611,-	p@chr1:151913598..151913611 -
Hg19::chr1:151913612..151913631,-	p@chr1:151913612..151913631 -
Hg19::chr1:151913957..151913980,-	p@chr1:151913957..151913980 -
Hg19::chr1:151914166..151914193,+	p@chr1:151914166..151914193 +
Hg19::chr1:151917005..151917021,-	p@chr1:151917005..151917021 -
Hg19::chr1:151917057..151917078,-	p@chr1:151917057..151917078 -
Hg19::chr1:151917148..151917162,-	p@chr1:151917148..151917162 -
Hg19::chr1:151917355..151917371,+	p@chr1:151917355..151917371 +
Hg19::chr1:151918240..151918247,-	p@chr1:151918240..151918247 -
Hg19::chr1:151918249..151918277,-	p@chr1:151918249..151918277 -
Hg19::chr1:151918280..151918290,-	p@chr1:151918280..151918290 -
Hg19::chr1:151918485..151918503,+	p@chr1:151918485..151918503 +
Hg19::chr1:15545407..15545411,+	p@chr1:15545407..15545411 +
Hg19::chr1:221862665..221862679,-	p@chr1:221862665..221862679 -
Hg19::chr1:28189986..28189990,+	p@chr1:28189986..28189990 +
Hg19::chr1:38465437..38465459,+	p@chr1:38465437..38465459 +
Hg19::chr1:92179103..92179141,-	p@chr1:92179103..92179141 -
Hg19::chr20:56008066..56008071,-	p@chr20:56008066..56008071 -
Hg19::chr21:36238528..36238531,+	p@chr21:36238528..36238531 +
Hg19::chr22:37281783..37281788,+	p@chr22:37281783..37281788 +
Hg19::chr22:43326895..43326930,-	p@chr22:43326895..43326930 -
Hg19::chr22:43329570..43329602,-	p@chr22:43329570..43329602 -
Hg19::chr22:43329610..43329637,-	p@chr22:43329610..43329637 -
Hg19::chr22:43330001..43330012,+	p@chr22:43330001..43330012 +
Hg19::chr22:43330043..43330062,+	p@chr22:43330043..43330062 +
Hg19::chr22:44464355..44464369,-	p@chr22:44464355..44464369 -
Hg19::chr22:44999934..44999939,+	p@chr22:44999934..44999939 +
Hg19::chr2:216614453..216614472,-	p@chr2:216614453..216614472 -
Hg19::chr2:216614478..216614489,-	p@chr2:216614478..216614489 -
Hg19::chr2:216614538..216614551,-	p@chr2:216614538..216614551 -
Hg19::chr2:235217365..235217381,-	p@chr2:235217365..235217381 -
Hg19::chr2:235217451..235217465,-	p@chr2:235217451..235217465 -
Hg19::chr2:235334858..235334870,-	p@chr2:235334858..235334870 -
Hg19::chr2:240387639..240387653,+	p@chr2:240387639..240387653 +
Hg19::chr2:40709772..40709789,-	p@chr2:40709772..40709789 -
Hg19::chr2:47212524..47212567,+	p@chr2:47212524..47212567 +
Hg19::chr2:47284758..47284782,-	p@chr2:47284758..47284782 -
Hg19::chr2:47300229..47300236,+	p@chr2:47300229..47300236 +
Hg19::chr2:47300248..47300284,+	p@chr2:47300248..47300284 +
Hg19::chr2:65090007..65090020,+	p@chr2:65090007..65090020 +
Hg19::chr2:65090091..65090103,+	p@chr2:65090091..65090103 +
Hg19::chr2:99122586..99122606,-	p@chr2:99122586..99122606 -
Hg19::chr3:112298821..112298852,+	p@chr3:112298821..112298852 +
Hg19::chr3:151976224..151976237,-	p@chr3:151976224..151976237 -
Hg19::chr3:151976260..151976273,-	p@chr3:151976260..151976273 -
Hg19::chr3:152939631..152939652,-	p@chr3:152939631..152939652 -
Hg19::chr3:15835826..15835840,-	p@chr3:15835826..15835840 -
Hg19::chr3:15836007..15836021,+	p@chr3:15836007..15836021 +
Hg19::chr3:15836027..15836046,+	p@chr3:15836027..15836046 +
Hg19::chr3:15837673..15837713,+	p@chr3:15837673..15837713 +
Hg19::chr3:15847222..15847244,-	p@chr3:15847222..15847244 -
Hg19::chr3:172468136..172468178,-	p@chr3:172468136..172468178 -
Hg19::chr3:190335275..190335290,+	p@chr3:190335275..190335290 +
Hg19::chr3:196370159..196370173,-	p@chr3:196370159..196370173 -
Hg19::chr3:45208780..45208803,+	p@chr3:45208780..45208803 +
Hg19::chr4:124538142..124538152,-	p@chr4:124538142..124538152 -
Hg19::chr4:124538169..124538193,-	p@chr4:124538169..124538193 -
Hg19::chr4:124538200..124538219,-	p@chr4:124538200..124538219 -
Hg19::chr4:2414806..2414827,-	p@chr4:2414806..2414827 -
Hg19::chr4:26076498..26076513,+	p@chr4:26076498..26076513 +
Hg19::chr4:26219782..26219791,-	p@chr4:26219782..26219791 -
Hg19::chr4:3374759..3374771,-	p@chr4:3374759..3374771 -
Hg19::chr4:40056412..40056426,+	p@chr4:40056412..40056426 +
Hg19::chr4:40057419..40057431,+	p@chr4:40057419..40057431 +
Hg19::chr5:106725704..106725717,+	p@chr5:106725704..106725717 +
Hg19::chr5:106725733..106725744,+	p@chr5:106725733..106725744 +
Hg19::chr5:106725747..106725757,+	p@chr5:106725747..106725757 +
Hg19::chr5:140984131..140984145,+	p@chr5:140984131..140984145 +
Hg19::chr5:140984152..140984163,+	p@chr5:140984152..140984163 +
Hg19::chr5:140984173..140984197,+	p@chr5:140984173..140984197 +
Hg19::chr5:146862466..146862485,-	p@chr5:146862466..146862485 -
Hg19::chr5:40391958..40391988,+	p@chr5:40391958..40391988 +
Hg19::chr5:59055872..59055891,-	p@chr5:59055872..59055891 -
Hg19::chr6:11318639..11318673,-	p@chr6:11318639..11318673 -
Hg19::chr6:121655787..121655813,+	p@chr6:121655787..121655813 +
Hg19::chr6:13396406..13396432,+	p@chr6:13396406..13396432 +
Hg19::chr6:136904512..136904532,+	p@chr6:136904512..136904532 +
Hg19::chr6:138145416..138145431,-	p@chr6:138145416..138145431 -
Hg19::chr6:14721357..14721365,-	p@chr6:14721357..14721365 -
Hg19::chr6:158452675..158452686,+	p@chr6:158452675..158452686 +
Hg19::chr6:159271714..159271721,+	p@chr6:159271714..159271721 +
Hg19::chr6:160403136..160403162,+	p@chr6:160403136..160403162 +
Hg19::chr6:160403199..160403212,+	p@chr6:160403199..160403212 +
Hg19::chr6:161790443..161790451,-	p@chr6:161790443..161790451 -
Hg19::chr6:167504549..167504554,-	p@chr6:167504549..167504554 -
Hg19::chr6:167508510..167508523,-	p@chr6:167508510..167508523 -
Hg19::chr6:20326681..20326699,+	p@chr6:20326681..20326699 +
Hg19::chr6:25007534..25007546,-	p@chr6:25007534..25007546 -
Hg19::chr6:25007568..25007579,-	p@chr6:25007568..25007579 -
Hg19::chr6:33029858..33029902,-	p@chr6:33029858..33029902 -
Hg19::chr6:37070154..37070164,-	p@chr6:37070154..37070164 -
Hg19::chr7:100780601..100780612,+	p@chr7:100780601..100780612 +
Hg19::chr7:1014746..1014766,-	p3@COX19
Hg19::chr7:104597631..104597646,-	p@chr7:104597631..104597646 -
Hg19::chr7:104597794..104597837,+	p@chr7:104597794..104597837 +
Hg19::chr7:12726552..12726563,+	p3@ARL4A
Hg19::chr7:158611014..158611026,-	p@chr7:158611014..158611026 -
Hg19::chr7:158611500..158611530,+	p@chr7:158611500..158611530 +
Hg19::chr7:17049278..17049326,+	p@chr7:17049278..17049326 +
Hg19::chr7:45020110..45020119,-	p@chr7:45020110..45020119 -
Hg19::chr7:73132509..73132513,+	p@chr7:73132509..73132513 +
Hg19::chr7:968509..968538,+	p@chr7:968509..968538 +
Hg19::chr8:102167846..102167856,+	p@chr8:102167846..102167856 +
Hg19::chr8:116507627..116507631,+	p@chr8:116507627..116507631 +
Hg19::chr8:145516231..145516253,-	p@chr8:145516231..145516253 -
Hg19::chr8:48504387..48504397,-	p@chr8:48504387..48504397 -
Hg19::chr9:110250603..110250614,-	p24@KLF4
Hg19::chr9:110252580..110252611,+	p@chr9:110252580..110252611 +
Hg19::chr9:128003959..128003980,+	p2@ENST00000468244
Hg19::chr9:136154265..136154271,-	p@chr9:136154265..136154271 -
Hg19::chr9:34986883..34986905,+	p@chr9:34986883..34986905 +
Hg19::chr9:36151946..36151961,-	p@chr9:36151946..36151961 -
Hg19::chr9:36152108..36152123,+	p@chr9:36152108..36152123 +
Hg19::chr9:36152132..36152143,+	p@chr9:36152132..36152143 +
Hg19::chr9:73178844..73178863,+	p@chr9:73178844..73178863 +
Hg19::chr9:97418592..97418631,-	p@chr9:97418592..97418631 -
Hg19::chrX:106918248..106918263,+	p@chrX:106918248..106918263 +
Hg19::chrX:11359728..11359776,+	p@chrX:11359728..11359776 +
Hg19::chrX:38728212..38728224,-	p@chrX:38728212..38728224 -
Hg19::chrX:45626788..45626791,-	p@chrX:45626788..45626791 -

Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

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No results for this coexpression

Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data

---

GO ID	GO name	FDR corrected p-value
GO:0001631	cysteinyl leukotriene receptor activity	0.0125586231956325
GO:0016428	tRNA (cytosine-5-)-methyltransferase activity	0.0125586231956325
GO:0016427	tRNA (cytosine)-methyltransferase activity	0.0125586231956325
GO:0007500	mesodermal cell fate determination	0.014647414559192
GO:0003886	DNA (cytosine-5-)-methyltransferase activity	0.014647414559192
GO:0004974	leukotriene receptor activity	0.014647414559192
GO:0009008	DNA-methyltransferase activity	0.014647414559192
GO:0001710	mesodermal cell fate commitment	0.014647414559192
GO:0048333	mesodermal cell differentiation	0.014647414559192
GO:0008175	tRNA methyltransferase activity	0.0246124767523266
GO:0001707	mesoderm formation	0.0246124767523266
GO:0048332	mesoderm morphogenesis	0.0246124767523266
GO:0001704	formation of primary germ layer	0.0246124767523266
GO:0006305	DNA alkylation	0.0287069673487321
GO:0006306	DNA methylation	0.0287069673487321
GO:0007369	gastrulation	0.0287069673487321
GO:0008173	RNA methyltransferase activity	0.0287069673487321
GO:0006304	DNA modification	0.0287069673487321
GO:0001709	cell fate determination	0.0287069673487321
GO:0007498	mesoderm development	0.0402649374668714
GO:0043414	biopolymer methylation	0.0402649374668714

Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

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Cell Type

Ontology term	p-value	n
classical monocyte	2.00e-124	42
CD14-positive, CD16-negative classical monocyte	2.00e-124	42
defensive cell	1.70e-107	48
phagocyte	1.70e-107	48
granulocyte monocyte progenitor cell	7.02e-96	67
myeloid leukocyte	1.41e-93	72
macrophage dendritic cell progenitor	2.54e-93	61
myeloid lineage restricted progenitor cell	5.30e-89	66
monopoietic cell	6.28e-88	59
monocyte	6.28e-88	59
monoblast	6.28e-88	59
promonocyte	6.28e-88	59
leukocyte	1.31e-78	136
hematopoietic lineage restricted progenitor cell	1.66e-71	120
nongranular leukocyte	6.10e-70	115
myeloid cell	3.44e-64	108
common myeloid progenitor	3.44e-64	108
hematopoietic stem cell	1.79e-63	168
angioblastic mesenchymal cell	1.79e-63	168
hematopoietic cell	1.37e-59	177
hematopoietic oligopotent progenitor cell	2.94e-57	161
hematopoietic multipotent progenitor cell	2.94e-57	161
stuff accumulating cell	2.25e-54	87
intermediate monocyte	4.02e-28	9
CD14-positive, CD16-positive monocyte	4.02e-28	9
mesenchymal cell	3.79e-23	354
connective tissue cell	1.95e-22	361
motile cell	6.25e-20	386
multi fate stem cell	7.31e-17	427
stem cell	8.55e-17	441
somatic stem cell	1.94e-16	433
basophil	2.31e-11	3
single nucleate cell	3.17e-10	3
mononuclear cell	3.17e-10	3
natural killer cell	3.38e-10	3
pro-NK cell	3.38e-10	3
non-classical monocyte	1.44e-09	3
CD14-low, CD16-positive monocyte	1.44e-09	3
somatic cell	2.28e-08	588
CD1a-positive Langerhans cell	4.56e-07	2
immature CD1a-positive Langerhans cell	4.56e-07	2

Uber Anatomy

Ontology term	p-value	n
bone marrow	5.50e-87	76
bone element	7.95e-80	82
hematopoietic system	2.08e-74	98
blood island	2.08e-74	98
skeletal element	9.52e-72	90
immune system	4.51e-69	93
hemolymphoid system	1.94e-66	108
skeletal system	1.89e-63	100
musculoskeletal system	2.44e-33	167
lateral plate mesoderm	1.07e-29	203
connective tissue	1.82e-21	371
mesoderm	1.21e-15	315
mesoderm-derived structure	1.21e-15	315
presumptive mesoderm	1.21e-15	315

Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

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Novel motifs

JASPAR motifs

Motifs	-log10(p-value)
{{{tfbs_overrepresentation_jaspar}}}

ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data

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(#promoters = Number of promoters in this coexpression cluster that have ChIP signal of the TF)

TF	#promoters	Enrichment	p-value	q-value
BATF#10538	41	4.3994267554381	1.67490011737358e-15	3.09054581905265e-13
BCL11A#53335	45	5.62390079146395	5.22508117079333e-21	1.38152468961135e-18
BCL3#602	17	2.58722796327556	0.000378285955071586	0.00375085985585506
CEBPB#1051	66	2.31760239341162	3.06980761824052e-11	3.54654466638741e-09
EBF1#1879	58	2.27566113260353	1.46126945084021e-09	1.30105302793095e-07
EP300#2033	81	2.4171333912955	4.88253776334868e-15	8.59911233501472e-13
FOS#2353	69	2.73506130534676	3.22990485018335e-15	5.7860726011715e-13
FOSL1#8061	25	4.37374225951245	9.60422548873345e-10	8.93989042618389e-08
FOSL2#2355	26	1.93914191946522	0.00100817298477316	0.00721824764219675
GATA1#2623	36	2.15053345011813	1.18654576496437e-05	0.000300052428927637
GATA2#2624	43	2.41423816979217	6.30377529272291e-08	3.88871817954335e-06
IRF4#3662	38	3.66850873170166	4.96936013579472e-12	6.4874375402783e-10
JUN#3725	75	4.13419466707148	3.38304125992549e-27	1.18963449880592e-24
JUNB#3726	27	3.64091225469238	9.49263992099041e-09	7.23123136913434e-07
JUND#3727	69	2.12613133034846	4.19968407594022e-10	4.11454789124879e-08
MAX#4149	75	2.13190159989222	4.30213242882996e-11	4.88912305478315e-09
MEF2A#4205	40	3.3027719664571	3.05784811938672e-11	3.53664008572126e-09
MEF2C#4208	21	3.82175526143218	2.11636981411058e-07	1.12886387648567e-05
NFKB1#4790	59	1.42641296047329	0.00231336833037304	0.013121483465803
NR3C1#2908	54	3.56186458098389	2.00214900800815e-16	3.95278715023371e-14
POLR2A#5430	128	1.21089870748649	0.00187655786937576	0.0110607724656998
POU2F2#5452	50	2.00575419774064	1.2696983713055e-06	5.08263810658394e-05
PRDM1#639	7	4.06527176406267	0.00189302764674972	0.0111515547633196
RAD21#5885	34	1.55097423984808	0.00689306483806159	0.0291884851857896
REST#5978	35	1.4878898901519	0.0112853011343014	0.0414090420955383
RFX5#5993	37	1.96375639033576	6.1726994482562e-05	0.00101140658562352
SMARCA4#6597	7	4.83419085090404	0.000705312756525643	0.00566980903469686
SMARCC1#6599	16	3.07759360843217	8.2296770213619e-05	0.0012374017253585
SMARCC2#6601	7	2.90346969598363	0.0113417963876431	0.0415914983472281
SMC3#9126	31	2.05459435327277	0.000117944875361978	0.00160245152047998
SP1#6667	60	1.50618009994914	0.000541001472139808	0.0046734204093308
SPI1#6688	86	3.10824591071786	4.50362832701613e-23	1.32868485549502e-20
STAT3#6774	77	3.56827667304351	5.58133417082512e-24	1.70941043831907e-21
TAL1#6886	15	1.97369713727578	0.010098968949762	0.0378187177074901
TCF12#6938	39	1.82706665720383	0.00017431527386013	0.00212084260096437
TRIM28#10155	27	2.21120782476691	0.000104047948543692	0.0014514042604454

Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data

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