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Coexpression cluster:C79: Difference between revisions

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|tfbs_overrepresentation_for_novel_motifs=0.116437,2.45929e-10,0.0245055,1.02808,2.66503,1.0152,0.124977,0.157032,0.0185592,3.45486e-08,0.0246654,0.120718,0.000311898,0.00455375,2.63592,2.61102,0.00186539,2.18408,0.00139235,0.012898,0.995628,6.4987e-05,0.00293921,0.464023,0.00519756,0.0860141,0.402517,0.168886,5.87337e-06,0.000287855,0.000244821,2.28099,0.000157134,8.0016e-05,0.00208562,2.48431e-10,9.76979e-10,0.0434368,0.529216,4.14567e-07,1.73712,0.843492,0.038998,4.29049,1.40938e-10,0.00338524,0.202668,0.0198529,0.156175,0.0152524,0.580193,0.00721517,5.65801e-05,0.405409,0.0262355,0.2752,0.44786,0.193488,0.0242767,0.0072811,0.528979,0.0167916,0.0838284,0.0311394,0.0492008,0.0209201,1.07995,0.208887,0.0536391,0.121757,2.12412e-06,0.515211,2.73387e-14,1.15746,2.02509e-15,0.00125604,0.000478508,0.786651,3.03925,0.468295,0.297259,0.429968,1.33077,0.576883,0.0175723,0,0.0677821,0.00207644,0.00239611,0.749193,0.553525,0.0663538,1.61574,2.67819,1.25097e-08,0.0774617,0.125807,1.50283,0.711999,0.00104091,0.762097,1.23671,0.031015,0.20267,0.890536,8.66691e-07,0.00157436,0.058056,0.0112559,2.10473e-06,0.018002,0.35127,0.0212878,0.0295074,0.0592141,3.01567,0,0.000235759,0.115225,1.21503,2.50702,2.40806,0.0730619,1.16624,0.327801,0.389194,0.0329076,0.00392454,1.29364,0.00454151,0.17523,0.00760357,1.81813,0.267981,0.577171,0.00071315,0.0831562,0.763701,0.231929,0.631904,0.308702,1.16952,0.40614,0.361098,0.0185337,0.00201359,1.97839,0.49617,0.817622,1.28638e-07,0.0025346,0,0.0141938,0.000352613,0.434248,0.136454,1.05852,0.138469,1.3043,1.61853e-05,0.761917,1.13716,0.231852,0.000306076,0.530129,0.669227,0.0478701,0.935993,0
|tfbs_overrepresentation_for_novel_motifs=0.116437,2.45929e-10,0.0245055,1.02808,2.66503,1.0152,0.124977,0.157032,0.0185592,3.45486e-08,0.0246654,0.120718,0.000311898,0.00455375,2.63592,2.61102,0.00186539,2.18408,0.00139235,0.012898,0.995628,6.4987e-05,0.00293921,0.464023,0.00519756,0.0860141,0.402517,0.168886,5.87337e-06,0.000287855,0.000244821,2.28099,0.000157134,8.0016e-05,0.00208562,2.48431e-10,9.76979e-10,0.0434368,0.529216,4.14567e-07,1.73712,0.843492,0.038998,4.29049,1.40938e-10,0.00338524,0.202668,0.0198529,0.156175,0.0152524,0.580193,0.00721517,5.65801e-05,0.405409,0.0262355,0.2752,0.44786,0.193488,0.0242767,0.0072811,0.528979,0.0167916,0.0838284,0.0311394,0.0492008,0.0209201,1.07995,0.208887,0.0536391,0.121757,2.12412e-06,0.515211,2.73387e-14,1.15746,2.02509e-15,0.00125604,0.000478508,0.786651,3.03925,0.468295,0.297259,0.429968,1.33077,0.576883,0.0175723,0,0.0677821,0.00207644,0.00239611,0.749193,0.553525,0.0663538,1.61574,2.67819,1.25097e-08,0.0774617,0.125807,1.50283,0.711999,0.00104091,0.762097,1.23671,0.031015,0.20267,0.890536,8.66691e-07,0.00157436,0.058056,0.0112559,2.10473e-06,0.018002,0.35127,0.0212878,0.0295074,0.0592141,3.01567,0,0.000235759,0.115225,1.21503,2.50702,2.40806,0.0730619,1.16624,0.327801,0.389194,0.0329076,0.00392454,1.29364,0.00454151,0.17523,0.00760357,1.81813,0.267981,0.577171,0.00071315,0.0831562,0.763701,0.231929,0.631904,0.308702,1.16952,0.40614,0.361098,0.0185337,0.00201359,1.97839,0.49617,0.817622,1.28638e-07,0.0025346,0,0.0141938,0.000352613,0.434248,0.136454,1.05852,0.138469,1.3043,1.61853e-05,0.761917,1.13716,0.231852,0.000306076,0.530129,0.669227,0.0478701,0.935993,0
|tfbs_overrepresentation_jaspar=MA0003.1;0,MA0004.1;0.396158,MA0006.1;8.35849e-07,MA0007.1;0.000314975,MA0009.1;0.731814,MA0014.1;0,MA0017.1;0.00270443,MA0019.1;0.210214,MA0024.1;0.060328,MA0025.1;0.527999,MA0027.1;1.07859,MA0028.1;2.00295e-06,MA0029.1;8.1955,MA0030.1;0.66661,MA0031.1;3.06741,MA0038.1;0.129158,MA0040.1;1.00663,MA0041.1;0.258167,MA0042.1;0.453123,MA0043.1;0.477712,MA0046.1;0.125821,MA0048.1;1.75338e-06,MA0050.1;0.589528,MA0051.1;0.0154571,MA0052.1;0.741742,MA0055.1;3.41397e-10,MA0056.1;0,MA0057.1;1.22781e-07,MA0058.1;0.00592595,MA0059.1;8.4281e-05,MA0060.1;0.00011728,MA0061.1;0.0438719,MA0063.1;0,MA0066.1;0.308731,MA0067.1;0.0813256,MA0068.1;0.00142007,MA0069.1;0.122535,MA0070.1;0.238115,MA0071.1;0.299455,MA0072.1;1.23963,MA0073.1;0,MA0074.1;0.195578,MA0076.1;0.000162837,MA0077.1;0.390401,MA0078.1;2.0056,MA0081.1;0.146664,MA0083.1;0.0520158,MA0084.1;0.971421,MA0087.1;0.628191,MA0088.1;3.59814e-08,MA0089.1;0,MA0090.1;0.826999,MA0091.1;0.30034,MA0092.1;0.124848,MA0093.1;0.00769489,MA0095.1;0,MA0098.1;0,MA0100.1;2.15521,MA0101.1;0.918851,MA0103.1;0.423545,MA0105.1;6.04997e-09,MA0106.1;0.000765999,MA0107.1;1.17512,MA0108.2;0.00945416,MA0109.1;0,MA0111.1;0.0956378,MA0113.1;1.66524,MA0114.1;2.36853e-07,MA0115.1;0.0554827,MA0116.1;7.3764e-05,MA0117.1;0.0137236,MA0119.1;0.00349453,MA0122.1;0.638947,MA0124.1;0.0438599,MA0125.1;0.262029,MA0130.1;0,MA0131.1;0.0769536,MA0132.1;0,MA0133.1;0,MA0135.1;2.96001,MA0136.1;0.328769,MA0139.1;5.38722e-06,MA0140.1;1.09447,MA0141.1;0.0379871,MA0142.1;2.72881,MA0143.1;4.29737,MA0144.1;2.02381,MA0145.1;0,MA0146.1;0,MA0147.1;0.00129366,MA0148.1;2.55761,MA0149.1;0.00205546,MA0062.2;5.63865e-09,MA0035.2;1.56327,MA0039.2;0,MA0138.2;0.00025484,MA0002.2;0.177127,MA0137.2;0.0658032,MA0104.2;1.76981e-06,MA0047.2;4.69592,MA0112.2;4.04053e-13,MA0065.2;1.43918e-10,MA0150.1;0.000753346,MA0151.1;0,MA0152.1;3.20687,MA0153.1;1.48167,MA0154.1;0.0016665,MA0155.1;3.9494e-13,MA0156.1;0.0692261,MA0157.1;2.44727,MA0158.1;0,MA0159.1;0.0878179,MA0160.1;0.0956513,MA0161.1;0,MA0162.1;0,MA0163.1;0,MA0164.1;0.265385,MA0080.2;0.884742,MA0018.2;8.22676e-05,MA0099.2;0.00298163,MA0079.2;0,MA0102.2;0.189321,MA0258.1;0.000945063,MA0259.1;0.00189831,MA0442.1;0
}}
}}

Revision as of 18:16, 22 January 2013


Full id: C79_chorionic_Chondrocyte_Cardiac_Smooth_Fibroblast_Preadipocyte_Mesenchymal



Phase1 CAGE Peaks

Hg19::chr2:216225840..216225880,-p@chr2:216225840..216225880
-
Hg19::chr2:216226019..216226027,-p@chr2:216226019..216226027
-
Hg19::chr2:216226037..216226109,-p@chr2:216226037..216226109
-
Hg19::chr2:216226202..216226289,-p@chr2:216226202..216226289
-
Hg19::chr2:216226270..216226299,+p@chr2:216226270..216226299
+
Hg19::chr2:216226295..216226355,-p@chr2:216226295..216226355
-
Hg19::chr2:216226715..216226720,-p@chr2:216226715..216226720
-
Hg19::chr2:216226723..216226776,-p@chr2:216226723..216226776
-
Hg19::chr2:216226780..216226807,-p@chr2:216226780..216226807
-
Hg19::chr2:216229624..216229711,-p@chr2:216229624..216229711
-
Hg19::chr2:216230236..216230260,+p@chr2:216230236..216230260
+
Hg19::chr2:216230257..216230303,-p49@FN1
Hg19::chr2:216230308..216230359,-p50@FN1
Hg19::chr2:216232618..216232759,-p12@FN1
Hg19::chr2:216235008..216235020,-p70@FN1
Hg19::chr2:216235036..216235163,-p26@FN1
Hg19::chr2:216236330..216236334,-p@chr2:216236330..216236334
-
Hg19::chr2:216236659..216236746,-p38@FN1
Hg19::chr2:216236755..216236764,-p75@FN1
Hg19::chr2:216236789..216236803,-p64@FN1
Hg19::chr2:216236849..216236935,-p36@FN1
Hg19::chr2:216236941..216236998,-p45@FN1
Hg19::chr2:216236944..216236994,+p@chr2:216236944..216236994
+
Hg19::chr2:216236997..216237046,+p@chr2:216236997..216237046
+
Hg19::chr2:216237000..216237103,-p28@FN1
Hg19::chr2:216237128..216237139,-p79@FN1
Hg19::chr2:216237349..216237362,-p67@FN1
Hg19::chr2:216238037..216238075,+p@chr2:216238037..216238075
+
Hg19::chr2:216238068..216238142,-p31@FN1
Hg19::chr2:216239959..216240125,-p4@FN1
Hg19::chr2:216240035..216240051,+p@chr2:216240035..216240051
+
Hg19::chr2:216240376..216240402,+p@chr2:216240376..216240402
+
Hg19::chr2:216240380..216240381,-p82@FN1
Hg19::chr2:216240386..216240458,-p23@FN1
Hg19::chr2:216241210..216241264,+p@chr2:216241210..216241264
+
Hg19::chr2:216241247..216241253,-p71@FN1
Hg19::chr2:216241256..216241335,-p10@FN1
Hg19::chr2:216241304..216241361,+p@chr2:216241304..216241361
+
Hg19::chr2:216241339..216241404,-p7@FN1
Hg19::chr2:216242889..216242900,+p@chr2:216242889..216242900
+
Hg19::chr2:216242906..216242955,+p@chr2:216242906..216242955
+
Hg19::chr2:216242925..216242993,-p27@FN1
Hg19::chr2:216243869..216243940,+p@chr2:216243869..216243940
+
Hg19::chr2:216243872..216244063,-p@chr2:216243872..216244063
-
Hg19::chr2:216243953..216243994,+p@chr2:216243953..216243994
+
Hg19::chr2:216244346..216244358,-p@chr2:216244346..216244358
-
Hg19::chr2:216244391..216244398,-p@chr2:216244391..216244398
-
Hg19::chr2:216245562..216245577,-p58@FN1
Hg19::chr2:216245579..216245596,-p57@FN1
Hg19::chr2:216245602..216245652,-p33@FN1
Hg19::chr2:216245657..216245732,-p18@FN1
Hg19::chr2:216245737..216245751,-p65@FN1
Hg19::chr2:216245756..216245767,-p62@FN1
Hg19::chr2:216245779..216245803,-p52@FN1
Hg19::chr2:216246957..216246989,+p@chr2:216246957..216246989
+
Hg19::chr2:216246960..216247057,-p13@FN1
Hg19::chr2:216247013..216247028,+p@chr2:216247013..216247028
+
Hg19::chr2:216248054..216248100,+p@chr2:216248054..216248100
+
Hg19::chr2:216248075..216248078,-p76@FN1
Hg19::chr2:216248091..216248096,-p72@FN1
Hg19::chr2:216248100..216248102,-p80@FN1
Hg19::chr2:216248106..216248212,-p11@FN1
Hg19::chr2:216248785..216248799,-p32@FN1
Hg19::chr2:216248805..216248814,-p40@FN1
Hg19::chr2:216248820..216248848,-p15@FN1
Hg19::chr2:216248830..216248863,+p@chr2:216248830..216248863
+
Hg19::chr2:216248853..216248891,-p2@FN1
Hg19::chr2:216248896..216248910,-p24@FN1
Hg19::chr2:216249575..216249598,+p@chr2:216249575..216249598
+
Hg19::chr2:216249608..216249613,-p68@FN1
Hg19::chr2:216249615..216249696,-p14@FN1
Hg19::chr2:216251434..216251483,+p@chr2:216251434..216251483
+
Hg19::chr2:216251438..216251451,-p@chr2:216251438..216251451
-
Hg19::chr2:216251453..216251544,-p@chr2:216251453..216251544
-
Hg19::chr2:216251489..216251515,+p@chr2:216251489..216251515
+
Hg19::chr2:216251537..216251550,+p@chr2:216251537..216251550
+
Hg19::chr2:216251545..216251580,-p@chr2:216251545..216251580
-
Hg19::chr2:216251581..216251601,-p@chr2:216251581..216251601
-
Hg19::chr2:216251602..216251632,-p@chr2:216251602..216251632
-
Hg19::chr2:216251633..216251692,-p@chr2:216251633..216251692
-
Hg19::chr2:216252936..216252952,+p@chr2:216252936..216252952
+
Hg19::chr2:216252958..216252995,+p@chr2:216252958..216252995
+
Hg19::chr2:216252959..216253014,-p@chr2:216252959..216253014
-
Hg19::chr2:216253021..216253036,-p@chr2:216253021..216253036
-
Hg19::chr2:216256353..216256364,+p@chr2:216256353..216256364
+
Hg19::chr2:216256377..216256419,-p@chr2:216256377..216256419
-
Hg19::chr2:216256378..216256407,+p@chr2:216256378..216256407
+
Hg19::chr2:216256414..216256432,+p@chr2:216256414..216256432
+
Hg19::chr2:216256427..216256438,-p@chr2:216256427..216256438
-
Hg19::chr2:216256433..216256470,+p@chr2:216256433..216256470
+
Hg19::chr2:216256439..216256547,-p5@FN1
Hg19::chr2:216256489..216256512,+p@chr2:216256489..216256512
+
Hg19::chr2:216256725..216256736,-p74@FN1
Hg19::chr2:216257754..216257766,-p69@FN1
Hg19::chr2:216257770..216257790,-p60@FN1
Hg19::chr2:216259188..216259201,-p@chr2:216259188..216259201
-
Hg19::chr2:216259270..216259317,+p@chr2:216259270..216259317
+
Hg19::chr2:216259278..216259288,-p51@FN1
Hg19::chr2:216259298..216259308,-p55@FN1
Hg19::chr2:216259313..216259329,-p46@FN1
Hg19::chr2:216259325..216259350,+p@chr2:216259325..216259350
+
Hg19::chr2:216259334..216259354,-p41@FN1
Hg19::chr2:216259354..216259419,+p@chr2:216259354..216259419
+
Hg19::chr2:216259356..216259399,-p17@FN1
Hg19::chr2:216259404..216259444,-p21@FN1
Hg19::chr2:216259445..216259455,-p53@FN1
Hg19::chr2:216261849..216261862,+p@chr2:216261849..216261862
+
Hg19::chr2:216261870..216261879,+p@chr2:216261870..216261879
+
Hg19::chr2:216261885..216261914,+p@chr2:216261885..216261914
+
Hg19::chr2:216261906..216261920,-p@chr2:216261906..216261920
-
Hg19::chr2:216262426..216262440,-p56@FN1
Hg19::chr2:216262447..216262454,-p66@FN1
Hg19::chr2:216262464..216262489,-p25@FN1
Hg19::chr2:216262492..216262555,-p6@FN1
Hg19::chr2:216262556..216262578,-p20@FN1
Hg19::chr2:216264013..216264051,+p@chr2:216264013..216264051
+
Hg19::chr2:216264027..216264048,-p34@FN1
Hg19::chr2:216264051..216264090,-p3@FN1
Hg19::chr2:216269109..216269248,-p@chr2:216269109..216269248
-
Hg19::chr2:216269135..216269225,+p@chr2:216269135..216269225
+
Hg19::chr2:216269250..216269274,-p@chr2:216269250..216269274
-
Hg19::chr2:216269265..216269289,+p@chr2:216269265..216269289
+
Hg19::chr2:216269285..216269305,-p@chr2:216269285..216269305
-
Hg19::chr2:216269309..216269333,-p@chr2:216269309..216269333
-
Hg19::chr2:216269322..216269342,+p@chr2:216269322..216269342
+
Hg19::chr2:216269340..216269352,-p@chr2:216269340..216269352
-
Hg19::chr2:216269367..216269374,-p@chr2:216269367..216269374
-
Hg19::chr2:216269379..216269384,-p@chr2:216269379..216269384
-
Hg19::chr2:216270982..216270997,+p@chr2:216270982..216270997
+
Hg19::chr2:216270984..216271000,-p@chr2:216270984..216271000
-
Hg19::chr2:216271005..216271137,-p@chr2:216271005..216271137
-
Hg19::chr2:216271094..216271145,+p@chr2:216271094..216271145
+
Hg19::chr2:216271143..216271154,-p@chr2:216271143..216271154
-
Hg19::chr2:216271146..216271196,+p@chr2:216271146..216271196
+
Hg19::chr2:216271160..216271176,-p@chr2:216271160..216271176
-
Hg19::chr2:216271178..216271208,-p@chr2:216271178..216271208
-
Hg19::chr2:216271223..216271235,-p@chr2:216271223..216271235
-
Hg19::chr2:216271841..216271920,+p@chr2:216271841..216271920
+
Hg19::chr2:216271872..216271915,-p@chr2:216271872..216271915
-
Hg19::chr2:216271920..216271987,-p@chr2:216271920..216271987
-
Hg19::chr2:216271921..216271932,+p@chr2:216271921..216271932
+
Hg19::chr2:216271985..216272019,+p@chr2:216271985..216272019
+
Hg19::chr2:216271991..216272051,-p@chr2:216271991..216272051
-
Hg19::chr2:216272837..216272858,+p@chr2:216272837..216272858
+
Hg19::chr2:216272850..216272854,-p@chr2:216272850..216272854
-
Hg19::chr2:216272860..216272923,-p@chr2:216272860..216272923
-
Hg19::chr2:216273040..216273062,+p@chr2:216273040..216273062
+
Hg19::chr2:216273041..216273156,-p@chr2:216273041..216273156
-
Hg19::chr2:216274317..216274350,-p43@FN1
Hg19::chr2:216274354..216274463,-p8@FN1
Hg19::chr2:216274423..216274443,+p@chr2:216274423..216274443
+
Hg19::chr2:216274641..216274703,+p@chr2:216274641..216274703
+
Hg19::chr2:216274684..216274712,-p37@FN1
Hg19::chr2:216274715..216274759,-p22@FN1
Hg19::chr2:216274738..216274750,+p@chr2:216274738..216274750
+
Hg19::chr2:216274762..216274777,-p48@FN1
Hg19::chr2:216274784..216274843,-p16@FN1
Hg19::chr2:216274786..216274797,+p@chr2:216274786..216274797
+
Hg19::chr2:216274803..216274815,+p@chr2:216274803..216274815
+
Hg19::chr2:216279555..216279566,+p@chr2:216279555..216279566
+
Hg19::chr2:216279570..216279641,+p@chr2:216279570..216279641
+
Hg19::chr2:216279600..216279620,-p@chr2:216279600..216279620
-
Hg19::chr2:216279623..216279686,-p@chr2:216279623..216279686
-
Hg19::chr2:216279653..216279654,+p@chr2:216279653..216279654
+
Hg19::chr2:216283958..216283993,+p@chr2:216283958..216283993
+
Hg19::chr2:216283990..216284004,-p@chr2:216283990..216284004
-
Hg19::chr2:216284007..216284022,+p@chr2:216284007..216284022
+
Hg19::chr2:216284024..216284054,+p@chr2:216284024..216284054
+
Hg19::chr2:216284048..216284059,-p@chr2:216284048..216284059
-
Hg19::chr2:216284075..216284086,-p@chr2:216284075..216284086
-
Hg19::chr2:216285392..216285435,+p@chr2:216285392..216285435
+
Hg19::chr2:216285416..216285421,-p@chr2:216285416..216285421
-
Hg19::chr2:216285430..216285470,-p@chr2:216285430..216285470
-
Hg19::chr2:216285441..216285489,+p@chr2:216285441..216285489
+
Hg19::chr2:216285472..216285532,-p30@FN1
Hg19::chr2:216285491..216285502,+p@chr2:216285491..216285502
+
Hg19::chr2:216286809..216286870,+p@chr2:216286809..216286870
+
Hg19::chr2:216286835..216286854,-p@chr2:216286835..216286854
-
Hg19::chr2:216286866..216286877,-p@chr2:216286866..216286877
-
Hg19::chr2:216286896..216286907,+p@chr2:216286896..216286907
+
Hg19::chr2:216286896..216286912,-p@chr2:216286896..216286912
-
Hg19::chr2:216286919..216286942,+p@chr2:216286919..216286942
+
Hg19::chr2:216286925..216286942,-p@chr2:216286925..216286942
-
Hg19::chr2:216286951..216286963,-p@chr2:216286951..216286963
-
Hg19::chr2:216288084..216288131,+p@chr2:216288084..216288131
+
Hg19::chr2:216288096..216288100,-p@chr2:216288096..216288100
-
Hg19::chr2:216288105..216288140,-p@chr2:216288105..216288140
-
Hg19::chr2:216288133..216288158,+p@chr2:216288133..216288158
+
Hg19::chr2:216288145..216288156,-p@chr2:216288145..216288156
-
Hg19::chr2:216288165..216288235,-p@chr2:216288165..216288235
-
Hg19::chr2:216288167..216288200,+p@chr2:216288167..216288200
+
Hg19::chr2:216288213..216288229,+p@chr2:216288213..216288229
+
Hg19::chr2:216288238..216288248,-p@chr2:216288238..216288248
-
Hg19::chr2:216288862..216288879,+p@chr2:216288862..216288879
+
Hg19::chr2:216288881..216288922,+p@chr2:216288881..216288922
+
Hg19::chr2:216288893..216288957,-p@chr2:216288893..216288957
-
Hg19::chr2:216288924..216288958,+p@chr2:216288924..216288958
+
Hg19::chr2:216288963..216288992,+p@chr2:216288963..216288992
+
Hg19::chr2:216288963..216289017,-p@chr2:216288963..216289017
-
Hg19::chr2:216289001..216289015,+p@chr2:216289001..216289015
+
Hg19::chr2:216289020..216289031,-p@chr2:216289020..216289031
-
Hg19::chr2:216289040..216289056,-p@chr2:216289040..216289056
-
Hg19::chr2:216289824..216289844,+p@chr2:216289824..216289844
+
Hg19::chr2:216289849..216289895,+p@chr2:216289849..216289895
+
Hg19::chr2:216289851..216289877,-p42@FN1
Hg19::chr2:216289880..216289901,-p44@FN1
Hg19::chr2:216289907..216289919,-p47@FN1
Hg19::chr2:216289922..216290014,-p9@FN1
Hg19::chr2:216289931..216289975,+p@chr2:216289931..216289975
+
Hg19::chr2:216292922..216293012,-p@chr2:216292922..216293012
-
Hg19::chr2:216292925..216292962,+p@chr2:216292925..216292962
+
Hg19::chr2:216292976..216293025,+p@chr2:216292976..216293025
+
Hg19::chr2:216293013..216293070,-p@chr2:216293013..216293070
-
Hg19::chr2:216293031..216293041,+p@chr2:216293031..216293041
+
Hg19::chr2:216295443..216295487,+p@chr2:216295443..216295487
+
Hg19::chr2:216295480..216295498,-p@chr2:216295480..216295498
-
Hg19::chr2:216295498..216295542,+p@chr2:216295498..216295542
+
Hg19::chr2:216295510..216295544,-p@chr2:216295510..216295544
-
Hg19::chr2:216295550..216295567,-p@chr2:216295550..216295567
-
Hg19::chr2:216296541..216296600,+p@chr2:216296541..216296600
+
Hg19::chr2:216296603..216296619,+p@chr2:216296603..216296619
+
Hg19::chr2:216296612..216296623,-p@chr2:216296612..216296623
-
Hg19::chr2:216296625..216296645,+p@chr2:216296625..216296645
+
Hg19::chr2:216296635..216296642,-p@chr2:216296635..216296642
-
Hg19::chr2:216296649..216296678,-p@chr2:216296649..216296678
-
Hg19::chr2:216298040..216298094,+p@chr2:216298040..216298094
+
Hg19::chr2:216298063..216298110,-p29@FN1
Hg19::chr2:216298108..216298152,+p@chr2:216298108..216298152
+
Hg19::chr2:216298113..216298192,-p19@FN1
Hg19::chr2:216299432..216299457,+p@chr2:216299432..216299457
+
Hg19::chr2:216299437..216299441,-p@chr2:216299437..216299441
-
Hg19::chr2:216299443..216299554,-p@chr2:216299443..216299554
-
Hg19::chr2:216299463..216299527,+p@chr2:216299463..216299527
+
Hg19::chr2:216300364..216300450,+p@chr2:216300364..216300450
+
Hg19::chr2:216300557..216300586,+p2@ENST00000412951
Hg19::chr2:216300597..216300650,+p1@ENST00000412951
Hg19::chr2:216300784..216300798,-p1@FN1


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

No results for this coexpression

Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0005518collagen binding0.0141227416041969
GO:0006953acute-phase response0.0141227416041969
GO:0005793ER-Golgi intermediate compartment0.0141227416041969
GO:0008201heparin binding0.0141227416041969
GO:0002526acute inflammatory response0.0141227416041969
GO:0005539glycosaminoglycan binding0.0141227416041969
GO:0030247polysaccharide binding0.0141227416041969
GO:0005201extracellular matrix structural constituent0.0141227416041969
GO:0001871pattern binding0.0141227416041969
GO:0007169transmembrane receptor protein tyrosine kinase signaling pathway0.0210173083716001
GO:0016477cell migration0.0211992764094495
GO:0006954inflammatory response0.0230959432654946
GO:0007167enzyme linked receptor protein signaling pathway0.0230959432654946
GO:0051674localization of cell0.0249028611797951
GO:0006928cell motility0.0249028611797951
GO:0005578proteinaceous extracellular matrix0.0249028611797951
GO:0009611response to wounding0.0249028611797951
GO:0030246carbohydrate binding0.0265774428614414
GO:0006952defense response0.0307621756616904
GO:0009605response to external stimulus0.0316760861886259
GO:0044421extracellular region part0.0417735321671555
GO:0022610biological adhesion0.0417735321671555
GO:0007155cell adhesion0.0417735321671555



Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
somite4.18e-1871
presomitic mesoderm4.18e-1871
presumptive segmental plate4.18e-1871
dermomyotome4.18e-1871
trunk paraxial mesoderm4.18e-1871
dense mesenchyme tissue4.44e-1873
epithelial vesicle6.54e-1878
paraxial mesoderm1.60e-1772
presumptive paraxial mesoderm1.60e-1772
trunk mesenchyme8.34e-17122
multilaminar epithelium3.18e-1683
mesenchyme2.37e-15160
entire embryonic mesenchyme2.37e-15160
skeletal muscle tissue7.73e-1562
striated muscle tissue7.73e-1562
myotome7.73e-1562
muscle tissue2.00e-1464
musculature2.00e-1464
musculature of body2.00e-1464
unilaminar epithelium8.90e-14148
splanchnic layer of lateral plate mesoderm6.09e-1383
epithelial tube1.67e-11117
vasculature3.81e-1178
vascular system3.81e-1178
mesoderm1.19e-10315
mesoderm-derived structure1.19e-10315
presumptive mesoderm1.19e-10315
cardiovascular system1.57e-10109
integument1.75e-1046
integumental system1.75e-1046
circulatory system2.48e-10112
artery6.28e-1042
arterial blood vessel6.28e-1042
arterial system6.28e-1042
surface structure1.52e-0999
organ component layer1.93e-0966
trunk1.00e-08199
skin of body1.10e-0841
vessel1.69e-0868
connective tissue3.46e-08371
epithelial tube open at both ends6.68e-0859
blood vessel6.68e-0859
blood vasculature6.68e-0859
vascular cord6.68e-0859
extraembryonic structure7.60e-0824
heart1.43e-0724
primitive heart tube1.43e-0724
primary heart field1.43e-0724
anterior lateral plate mesoderm1.43e-0724
heart tube1.43e-0724
heart primordium1.43e-0724
cardiac mesoderm1.43e-0724
cardiogenic plate1.43e-0724
heart rudiment1.43e-0724
systemic artery1.74e-0733
systemic arterial system1.74e-0733
adipose tissue2.03e-0714
organism subdivision2.20e-07264
extraembryonic membrane2.76e-0714
membranous layer2.76e-0714
primary circulatory organ6.13e-0727


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs



JASPAR motifs

Motifs-log10(p-value)
MA0003.10
MA0004.10.396158
MA0006.18.35849e-07
MA0007.10.000314975
MA0009.10.731814
MA0014.10
MA0017.10.00270443
MA0019.10.210214
MA0024.10.060328
MA0025.10.527999
MA0027.11.07859
MA0028.12.00295e-06
MA0029.18.1955
MA0030.10.66661
MA0031.13.06741
MA0038.10.129158
MA0040.11.00663
MA0041.10.258167
MA0042.10.453123
MA0043.10.477712
MA0046.10.125821
MA0048.11.75338e-06
MA0050.10.589528
MA0051.10.0154571
MA0052.10.741742
MA0055.13.41397e-10
MA0056.10
MA0057.11.22781e-07
MA0058.10.00592595
MA0059.18.4281e-05
MA0060.10.00011728
MA0061.10.0438719
MA0063.10
MA0066.10.308731
MA0067.10.0813256
MA0068.10.00142007
MA0069.10.122535
MA0070.10.238115
MA0071.10.299455
MA0072.11.23963
MA0073.10
MA0074.10.195578
MA0076.10.000162837
MA0077.10.390401
MA0078.12.0056
MA0081.10.146664
MA0083.10.0520158
MA0084.10.971421
MA0087.10.628191
MA0088.13.59814e-08
MA0089.10
MA0090.10.826999
MA0091.10.30034
MA0092.10.124848
MA0093.10.00769489
MA0095.10
MA0098.10
MA0100.12.15521
MA0101.10.918851
MA0103.10.423545
MA0105.16.04997e-09
MA0106.10.000765999
MA0107.11.17512
MA0108.20.00945416
MA0109.10
MA0111.10.0956378
MA0113.11.66524
MA0114.12.36853e-07
MA0115.10.0554827
MA0116.17.3764e-05
MA0117.10.0137236
MA0119.10.00349453
MA0122.10.638947
MA0124.10.0438599
MA0125.10.262029
MA0130.10
MA0131.10.0769536
MA0132.10
MA0133.10
MA0135.12.96001
MA0136.10.328769
MA0139.15.38722e-06
MA0140.11.09447
MA0141.10.0379871
MA0142.12.72881
MA0143.14.29737
MA0144.12.02381
MA0145.10
MA0146.10
MA0147.10.00129366
MA0148.12.55761
MA0149.10.00205546
MA0062.25.63865e-09
MA0035.21.56327
MA0039.20
MA0138.20.00025484
MA0002.20.177127
MA0137.20.0658032
MA0104.21.76981e-06
MA0047.24.69592
MA0112.24.04053e-13
MA0065.21.43918e-10
MA0150.10.000753346
MA0151.10
MA0152.13.20687
MA0153.11.48167
MA0154.10.0016665
MA0155.13.9494e-13
MA0156.10.0692261
MA0157.12.44727
MA0158.10
MA0159.10.0878179
MA0160.10.0956513
MA0161.10
MA0162.10
MA0163.10
MA0164.10.265385
MA0080.20.884742
MA0018.28.22676e-05
MA0099.20.00298163
MA0079.20
MA0102.20.189321
MA0258.10.000945063
MA0259.10.00189831
MA0442.10



ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data

(#promoters = Number of promoters in this coexpression cluster that have ChIP signal of the TF)

TF#promotersEnrichmentp-valueq-value
FOXA1#3169331.542982496749870.008488753747321770.0324105049578321
POLR2A#54301981.794074805732063.76660584990767e-321.65285944688448e-29



Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data

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