FFCP PHASE1:Hg19::chr11:85780086..85780161,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=8301|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=15514|TSSclassifier=S|UniProt=Q13492,F8VPG7,E9PKP6,Q4LE54|association_with_transcript=0bp_to_ENST00000447890,ENST00000526033,ENST00000528256,ENST00000532317,NM_001008660,NM_001206946,NM_007166,uc001pbl.2,uc001pbm.2,uc001pbn.2_5end|description=CAGE_peak_1_at_PICALM_5end|id=chr11:85780086..85780161,-|ontology_enrichment_celltype=CL:0000766!1.22e-18!76;CL:0002194!3.66e-17!63;CL:0000576!3.66e-17!63;CL:0000040!3.66e-17!63;CL:0000559!3.66e-17!63;CL:0000839!6.09e-17!70;CL:0002057!4.65e-16!42;CL:0002009!8.86e-16!65;CL:0000860!1.62e-15!45;CL:0000557!3.72e-14!71;CL:0000763!4.27e-09!112;CL:0000049!4.27e-09!112|ontology_enrichment_celltype_v019=CL:0000860;1.81e-16;33!CL:0002057;1.81e-16;33!CL:0000473;8.44e-15;39!CL:0000234;8.44e-15;39!CL:0000576;9.83e-10;48!CL:0000766;3.46e-08;69|ontology_enrichment_celltype_v019_2=CL:0000766,1.64e-18,72;CL:0000473,3.54e-17,48;CL:0000234,3.54e-17,48;CL:0002194,4.28e-17,59;CL:0000576,4.28e-17,59;CL:0000040,4.28e-17,59;CL:0000559,4.28e-17,59;CL:0000839,8.16e-17,66;CL:0000860,4.65e-16,42;CL:0002057,4.65e-16,42;CL:0002009,1.17e-15,61;CL:0000557,5.77e-14,67;CL:0000763,8.52e-09,108;CL:0000049,8.52e-09,108|ontology_enrichment_development_v019=CL:0002057;7.34e-12;42|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007023!3.06e-17!115;UBERON:0000467!1.71e-12!625;UBERON:0002390!2.10e-12!102;UBERON:0003061!2.10e-12!102;UBERON:0000480!3.11e-12!626;UBERON:0000468!3.14e-12!659;UBERON:0002204!3.81e-12!167;UBERON:0003081!5.20e-12!216;UBERON:0002193!3.71e-11!112;UBERON:0002371!4.79e-10!80;UBERON:0001474!1.71e-09!86;UBERON:0000479!1.17e-08!787;UBERON:0004765!1.51e-08!101;UBERON:0001434!1.51e-08!101;UBERON:0002050!7.70e-08!605;UBERON:0005423!7.70e-08!605;UBERON:0000923!9.32e-08!604;UBERON:0005291!9.32e-08!604;UBERON:0006598!9.32e-08!604;UBERON:0002532!9.32e-08!604;UBERON:0000062!4.73e-07!511;UBERON:0000922!9.15e-07!612|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0007023,5.10e-17,114;UBERON:0002390,4.11e-12,98;UBERON:0003061,4.11e-12,98;UBERON:0003081,4.42e-12,203;UBERON:0002204,6.51e-12,167;UBERON:0000926,1.53e-11,315;UBERON:0004120,1.53e-11,315;UBERON:0006603,1.53e-11,315;UBERON:0002193,7.48e-11,108;UBERON:0002371,8.95e-10,76;UBERON:0001474,3.29e-09,82;UBERON:0000479,5.16e-09,773;UBERON:0004765,1.85e-08,90;UBERON:0001434,2.96e-08,100;UBERON:0002405,3.37e-08,93;UBERON:0002050,4.83e-08,564;UBERON:0000923,5.57e-08,560;UBERON:0010316,5.57e-08,560;UBERON:0005291,5.57e-08,560;UBERON:0006598,5.57e-08,560;UBERON:0010317,5.57e-08,560;UBERON:0002532,5.57e-08,560;UBERON:0005423,1.44e-07,581|phase1_expression=84.1170896022677,134.241028479646,117.133109803752,109.079895204912,103.694973907131,145.680533524762,134.248935429205,82.7553034189149,71.8260477549556,41.037567395752,24.423040879035,59.1976118472767,48.5331239940355,63.3683727155439,62.3027066368482,116.312250336157,113.306571268508,111.737443829268,140.524646051666,45.6779125464883,46.3081569124454,41.6894779565857,69.2691088857157,69.5322079370252,84.7412817264919,52.9544901833302,45.8942295025197,47.6200226947759,105.421626195506,95.1896907281087,73.6924746984522,37.696270203636,42.168828628955,47.3285133013488,45.705648342378,42.6507697462265,28.4792426154802,126.310953145268,150.007246707666,102.863152719314,134.797115492434,133.120296733801,150.166555930731,184.364966772488,131.500828403706,147.005941079817,203.840265366285,174.335184521254,139.367866902797,292.870855383949,190.583565657651,154.422896117246,250.974855576258,151.688900642199,150.323400119719,189.37179357986,127.720078227072,116.182041458109,268.741657501652,193.199274299808,173.899698217339,267.839255751614,163.75966290736,183.276642729058,293.11133101487,296.742472513466,255.979944337181,247.731183943149,163.745636383943,145.950903641838,240.343602545447,240.853573935867,180.067098453863,71.6155420597483,90.7820360850736,61.0106658429374,112.553288408788,121.042575630254,161.368489043868,60.9927271606272,100.45292198554,68.4990576617377,36.9592113368778,34.9528711207764,32.9118423929515,40.5393711438182,35.2348468591691,31.6113841974966,41.6458269854463,44.8405264631621,46.6754634669748,48.153449528417,51.2246125687807,18.5039860010636,68.9425532467289,35.0300832750852,54.6853160916456,63.2747328026155,55.9236077278665,61.3574438083789,26.7256258639544,23.1989424810019,19.4826728407911,83.8920740345357,40.0664034165779,42.091439970888,38.9957563821622,56.2320893595714,66.3302672555379,50.4824367133286,47.5322030591659,50.7155400036342,33.6610498377877,30.4996544022273,28.2245914273437,56.6546713487831,33.7234034369691,41.5789209033982,38.2059734949449,47.7848121486145,36.4606734159594,31.3649174667963,60.5311978692647,59.7697474091134,76.207743196931,62.7459717916645,63.2268557629206,75.6025287092747,96.0110302862791,63.8675621123144,182.855149735471,71.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113.081053405364,77.7443574231787,73.6589041247397,72.260108241801,50.432829892755,123.974862120372,119.593547271247,78.3338441534342,68.6911224420087,33.6944712167039,111.059738758934,69.7995060860563,110.516240516562,22.798563127462,23.0454136139344,27.2099667864089,77.7496856386565,90.3960215736538,77.7730062920111,105.131056945572,35.9383183363261,36.7682606862685,46.5507187893453,52.8574648849347,39.5476794792879,58.0329531877594,48.3349480610108,45.808883273806,119.887640196339,44.0048537106994,24.8176931968496,58.5442066526535,106.573426118914,81.6353450976001,100.604569191165,116.053815534549,88.8153857162469,100.828678488687,67.2208493952198,102.698510621857,129.92017243583,61.8330626556461,35.9807656210608,64.9337238766744,68.6222456933009,137.678936463647,51.7769944545076,38.9875795347898,123.720990134528,42.1563593590357,75.0253450783769,74.9053146216868,168.193759282869,111.927057266303,92.3238781733455,85.9185908475232,113.264364482649,80.7283263768434,120.881432793027,76.2078295931483,126.53385048927,69.996755255129,113.836323026879,104.997559832144,155.363079665097,66.1592508617928,88.3329302443035,213.329200241146,31.6893465778393,56.5910431143481,110.994573951166,66.9566834869804,57.0876251469566,23.4698257992266,103.139924005575,98.3543592874172,97.2544406698848,84.0106022868736,116.816826849274,45.8641620371568,82.8413147007447,27.9684092766926,30.1065291703444,38.4226781788701,84.1796932966765,67.55246951715,61.6293702309159,87.7899770503897,64.5341038230416,67.8042364186139,87.5993800924141,89.758054640477,83.1657932814902,31.9512577234249,58.2878752776234,45.1895944463081,61.5401964767573,70.4685606397517,39.4931590684616,92.2938633637661,78.8673813309975,78.1994698825215,40.4715271789443,52.5230046426012,37.5787486857117,61.1038303830774,38.0394187939185,59.630323208836,153.345052160486,83.0526329915038,39.0363355980064,108.110409893472,64.8110504529471,195.915850180715,156.246406572047,93.4069157959314,193.546983629423,150.656220521705,158.953151742841,43.574343983269,53.0305197658803,58.9334435765205,26.3191682740472,83.9886846483495,62.8459118264221,149.646524810115,29.1877390057392,69.0793540339693,84.2156832356928,126.966441723696,134.662196576364,115.543907157855,128.490088950765,46.8077436138143,30.5943601498347,37.2493592973625,34.6762021122738,27.2561753370872,56.7910479125342,18.050942829051,87.7517325367212,58.4161803740469,169.150565649591,166.527123337651,97.0214617649463,75.2283603425419,91.7162519671287,123.839055020237,104.731159650293,79.3680063728716,78.8257036937055,89.917016881445,81.1092923572116,90.6558633576348,134.981190549017,103.45737088581,97.8467288703914,58.4865855409881,86.882527029123,92.6996085739977,86.8171486892781,145.956284354343,92.3654324776726,175.09403161079,122.173192709753,25.0043423996522|short_description=p1@PICALM}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=8301 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=15514 | |||
|TSSclassifier=S | |||
|UniProt=Q13492,F8VPG7,E9PKP6,Q4LE54 | |||
|association_with_transcript=0bp_to_ENST00000447890,ENST00000526033,ENST00000528256,ENST00000532317,NM_001008660,NM_001206946,NM_007166,uc001pbl.2,uc001pbm.2,uc001pbn.2_5end | |||
|description=CAGE_peak_1_at_PICALM_5end | |||
|id=chr11:85780086..85780161,- | |||
|ontology_enrichment_celltype=CL:0000766!1.22e-18!76;CL:0002194!3.66e-17!63;CL:0000576!3.66e-17!63;CL:0000040!3.66e-17!63;CL:0000559!3.66e-17!63;CL:0000839!6.09e-17!70;CL:0002057!4.65e-16!42;CL:0002009!8.86e-16!65;CL:0000860!1.62e-15!45;CL:0000557!3.72e-14!71;CL:0000763!4.27e-09!112;CL:0000049!4.27e-09!112 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.81e-16;33!CL:0002057;1.81e-16;33!CL:0000473;8.44e-15;39!CL:0000234;8.44e-15;39!CL:0000576;9.83e-10;48!CL:0000766;3.46e-08;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,1.64e-18,72;CL:0000473,3.54e-17,48;CL:0000234,3.54e-17,48;CL:0002194,4.28e-17,59;CL:0000576,4.28e-17,59;CL:0000040,4.28e-17,59;CL:0000559,4.28e-17,59;CL:0000839,8.16e-17,66;CL:0000860,4.65e-16,42;CL:0002057,4.65e-16,42;CL:0002009,1.17e-15,61;CL:0000557,5.77e-14,67;CL:0000763,8.52e-09,108;CL:0000049,8.52e-09,108 | |||
|ontology_enrichment_development_v019=CL:0002057;7.34e-12;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!3.06e-17!115;UBERON:0000467!1.71e-12!625;UBERON:0002390!2.10e-12!102;UBERON:0003061!2.10e-12!102;UBERON:0000480!3.11e-12!626;UBERON:0000468!3.14e-12!659;UBERON:0002204!3.81e-12!167;UBERON:0003081!5.20e-12!216;UBERON:0002193!3.71e-11!112;UBERON:0002371!4.79e-10!80;UBERON:0001474!1.71e-09!86;UBERON:0000479!1.17e-08!787;UBERON:0004765!1.51e-08!101;UBERON:0001434!1.51e-08!101;UBERON:0002050!7.70e-08!605;UBERON:0005423!7.70e-08!605;UBERON:0000923!9.32e-08!604;UBERON:0005291!9.32e-08!604;UBERON:0006598!9.32e-08!604;UBERON:0002532!9.32e-08!604;UBERON:0000062!4.73e-07!511;UBERON:0000922!9.15e-07!612 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,5.10e-17,114;UBERON:0002390,4.11e-12,98;UBERON:0003061,4.11e-12,98;UBERON:0003081,4.42e-12,203;UBERON:0002204,6.51e-12,167;UBERON:0000926,1.53e-11,315;UBERON:0004120,1.53e-11,315;UBERON:0006603,1.53e-11,315;UBERON:0002193,7.48e-11,108;UBERON:0002371,8.95e-10,76;UBERON:0001474,3.29e-09,82;UBERON:0000479,5.16e-09,773;UBERON:0004765,1.85e-08,90;UBERON:0001434,2.96e-08,100;UBERON:0002405,3.37e-08,93;UBERON:0002050,4.83e-08,564;UBERON:0000923,5.57e-08,560;UBERON:0010316,5.57e-08,560;UBERON:0005291,5.57e-08,560;UBERON:0006598,5.57e-08,560;UBERON:0010317,5.57e-08,560;UBERON:0002532,5.57e-08,560;UBERON:0005423,1.44e-07,581 | |||
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| |||
|short_description=p1@PICALM | |||
}} |
Revision as of 20:02, 10 September 2013
Short description: | p1@PICALM |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_PICALM_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000447890, ENST00000526033, ENST00000528256, ENST00000532317, NM_001008660, NM_001206946, NM_007166, uc001pbl.2, uc001pbm.2, uc001pbn.2_5end |
EntrezGene: | PICALM |
HGNC: | 15514 |
UniProt: | Q13492F8VPG7E9PKP6Q4LE54 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 1.64e-18 | 72 |
defensive cell | 3.54e-17 | 48 |
phagocyte | 3.54e-17 | 48 |
monopoietic cell | 4.28e-17 | 59 |
monocyte | 4.28e-17 | 59 |
monoblast | 4.28e-17 | 59 |
promonocyte | 4.28e-17 | 59 |
myeloid lineage restricted progenitor cell | 8.16e-17 | 66 |
classical monocyte | 4.65e-16 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.65e-16 | 42 |
macrophage dendritic cell progenitor | 1.17e-15 | 61 |
granulocyte monocyte progenitor cell | 5.77e-14 | 67 |
myeloid cell | 8.52e-09 | 108 |
common myeloid progenitor | 8.52e-09 | 108 |
Ontology term | p-value | n |
---|---|---|
adult organism | 5.10e-17 | 114 |
hematopoietic system | 4.11e-12 | 98 |
blood island | 4.11e-12 | 98 |
lateral plate mesoderm | 4.42e-12 | 203 |
musculoskeletal system | 6.51e-12 | 167 |
mesoderm | 1.53e-11 | 315 |
mesoderm-derived structure | 1.53e-11 | 315 |
presumptive mesoderm | 1.53e-11 | 315 |
hemolymphoid system | 7.48e-11 | 108 |
bone marrow | 8.95e-10 | 76 |
bone element | 3.29e-09 | 82 |
tissue | 5.16e-09 | 773 |
skeletal element | 1.85e-08 | 90 |
skeletal system | 2.96e-08 | 100 |
immune system | 3.37e-08 | 93 |
embryonic structure | 4.83e-08 | 564 |
germ layer | 5.57e-08 | 560 |
germ layer / neural crest | 5.57e-08 | 560 |
embryonic tissue | 5.57e-08 | 560 |
presumptive structure | 5.57e-08 | 560 |
germ layer / neural crest derived structure | 5.57e-08 | 560 |
epiblast (generic) | 5.57e-08 | 560 |
developing anatomical structure | 1.44e-07 | 581 |
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