FFCP PHASE1:Hg19::chr12:112450928..112450976,-: Difference between revisions
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{{FFCP | 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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=89894 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25084 | |||
|TSSclassifier=S | |||
|UniProt=Q8NCL8,Q9BWF8 | |||
|association_with_transcript=0bp_to_ENST00000354825,uc001ttc.1,uc001ttd.1,uc001tte.1,uc001ttf.1,uc001ttg.1,uc001tth.1,uc001tti.1_5end | |||
|description=CAGE_peak_1_at_TMEM116_5end | |||
|id=chr12:112450928..112450976,- | |||
|ontology_enrichment_celltype=CL:0000542!1.50e-12!53;CL:0000051!1.50e-12!53;CL:0000838!3.39e-12!52;CL:0000791!8.56e-09!18;CL:0000789!8.56e-09!18;CL:0002420!8.56e-09!18;CL:0002419!8.56e-09!18;CL:0000790!8.56e-09!18;CL:0000084!6.12e-08!25;CL:0000827!6.12e-08!25 | |||
|ontology_enrichment_celltype_v019=CL:0000791;8.44e-09;18!CL:0000789;8.44e-09;18!CL:0002419;8.44e-09;18!CL:0000542;6.19e-08;53!CL:0000084;7.14e-08;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000542,1.50e-12,53;CL:0000051,1.50e-12,53;CL:0000838,3.38e-12,52;CL:0000791,8.56e-09,18;CL:0000789,8.56e-09,18;CL:0002420,8.56e-09,18;CL:0002419,8.56e-09,18;CL:0000790,8.56e-09,18;CL:0000084,6.12e-08,25;CL:0000827,6.12e-08,25 | |||
|ontology_enrichment_development_v019=CL:0000790;8.44e-09;18!CL:0000051;6.19e-08;53!UBERON:0006601;1.06e-07;82 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
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| |||
|short_description=p1@TMEM116 | |||
}} |
Revision as of 20:55, 10 September 2013
Short description: | p1@TMEM116 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_TMEM116_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000354825, uc001ttc.1, uc001ttd.1, uc001tte.1, uc001ttf.1, uc001ttg.1, uc001tth.1, uc001tti.1_5end |
EntrezGene: | TMEM116 |
HGNC: | 25084 |
UniProt: | Q8NCL8Q9BWF8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte | 1.50e-12 | 53 |
common lymphoid progenitor | 1.50e-12 | 53 |
lymphoid lineage restricted progenitor cell | 3.38e-12 | 52 |
mature alpha-beta T cell | 8.56e-09 | 18 |
alpha-beta T cell | 8.56e-09 | 18 |
immature T cell | 8.56e-09 | 18 |
mature T cell | 8.56e-09 | 18 |
immature alpha-beta T cell | 8.56e-09 | 18 |
T cell | 6.12e-08 | 25 |
pro-T cell | 6.12e-08 | 25 |
Ontology term | p-value | n |
---|---|---|
adult organism | 2.54e-22 | 114 |
neural tube | 2.13e-19 | 56 |
neural rod | 2.13e-19 | 56 |
future spinal cord | 2.13e-19 | 56 |
neural keel | 2.13e-19 | 56 |
nervous system | 2.61e-18 | 89 |
regional part of nervous system | 4.31e-18 | 53 |
regional part of brain | 4.31e-18 | 53 |
central nervous system | 9.25e-18 | 81 |
brain | 2.62e-16 | 68 |
future brain | 2.62e-16 | 68 |
regional part of forebrain | 5.17e-16 | 41 |
forebrain | 5.17e-16 | 41 |
anterior neural tube | 5.17e-16 | 41 |
future forebrain | 5.17e-16 | 41 |
telencephalon | 7.94e-14 | 34 |
brain grey matter | 1.44e-13 | 34 |
gray matter | 1.44e-13 | 34 |
regional part of telencephalon | 6.80e-13 | 32 |
cerebral hemisphere | 1.21e-12 | 32 |
neurectoderm | 1.25e-12 | 86 |
neural plate | 1.22e-11 | 82 |
presumptive neural plate | 1.22e-11 | 82 |
regional part of cerebral cortex | 1.20e-10 | 22 |
organ system subdivision | 4.37e-10 | 223 |
neocortex | 1.01e-09 | 20 |
cerebral cortex | 1.33e-09 | 25 |
pallium | 1.33e-09 | 25 |
ectoderm-derived structure | 3.35e-09 | 171 |
ectoderm | 3.35e-09 | 171 |
presumptive ectoderm | 3.35e-09 | 171 |
pre-chordal neural plate | 5.14e-09 | 61 |
ecto-epithelium | 6.52e-08 | 104 |
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