FFCP PHASE1:Hg19::chr2:202047596..202047621,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=843|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=1500|TSSclassifier=S|UniProt=Q92851,Q68HC0|association_with_transcript=0bp_to_ENST00000286186,ENST00000360132,NM_001206524,NM_001206542,NM_001230,NM_032974,NM_032976,NM_032977,uc002uxi.1,uc002uxj.1,uc002uxk.1,uc002uxl.1,uc002uxm.1,uc010fta.1,uc010zhn.1_5end|coexpression_cluster_id=C7|description=CAGE_peak_3_at_CASP10_5end|id=chr2:202047596..202047621,+|ontology_enrichment_celltype=CL:0002194!1.07e-50!63;CL:0000576!1.07e-50!63;CL:0000040!1.07e-50!63;CL:0000559!1.07e-50!63;CL:0002009!1.80e-48!65;CL:0000766!1.78e-45!76;CL:0000557!1.92e-44!71;CL:0000839!1.81e-43!70;CL:0002057!2.36e-43!42;CL:0000860!2.48e-39!45;CL:0000763!2.23e-33!112;CL:0000049!2.23e-33!112;CL:0002087!1.31e-28!119;CL:0000738!7.45e-25!140;CL:0000037!3.28e-23!172;CL:0000566!3.28e-23!172;CL:0002031!3.71e-23!124;CL:0002032!1.22e-21!165;CL:0000837!1.22e-21!165;CL:0000988!1.65e-20!182;CL:0002393!2.42e-11!9;CL:0002397!2.42e-11!9|ontology_enrichment_celltype_v019=CL:0000860;9.57e-61;33!CL:0002057;9.57e-61;33!CL:0000473;9.86e-61;39!CL:0000234;9.86e-61;39!CL:0000576;2.11e-56;48!CL:0000766;3.17e-38;69!CL:0000763;7.90e-20;100!CL:0002087;4.45e-15;104!CL:0000738;1.21e-12;136!CL:0000235;2.40e-11;6!CL:0002393;5.28e-11;6!CL:0002397;5.28e-11;6!CL:0002619;1.64e-09;3!CL:0000875;2.28e-09;3!CL:0002396;2.28e-09;3!CL:0000767;1.86e-08;3!CL:0000988;5.47e-08;177!CL:0000226;7.96e-08;3!CL:0000842;7.96e-08;3|ontology_enrichment_celltype_v019_2=CL:0002194,9.56e-103,59;CL:0000576,9.56e-103,59;CL:0000040,9.56e-103,59;CL:0000559,9.56e-103,59;CL:0002009,5.52e-99,61;CL:0000473,4.58e-95,48;CL:0000234,4.58e-95,48;CL:0000766,8.32e-93,72;CL:0000557,1.09e-92,67;CL:0000839,1.46e-90,66;CL:0000860,8.24e-85,42;CL:0002057,8.24e-85,42;CL:0000763,3.90e-62,108;CL:0000049,3.90e-62,108;CL:0002087,4.04e-55,115;CL:0000738,1.76e-50,136;CL:0002031,5.84e-46,120;CL:0000037,2.66e-41,168;CL:0002032,1.22e-38,161;CL:0000837,1.22e-38,161;CL:0000988,1.89e-38,177;CL:0002393,2.41e-18,9;CL:0002397,2.41e-18,9;CL:0000134,6.29e-12,354;CL:0002320,2.01e-11,361;CL:0000235,3.24e-11,6;CL:0000219,1.18e-09,386;CL:0002619,1.84e-09,3;CL:0000875,2.11e-09,3;CL:0002396,2.11e-09,3;CL:0000767,3.16e-08,3;CL:0000226,7.06e-08,3;CL:0000842,7.06e-08,3;CL:0000048,1.59e-07,427;CL:0000723,3.11e-07,433;CL:0000034,7.32e-07,441|ontology_enrichment_development_v019=CL:0002057;2.91e-60;42!CL:0000049;3.13e-21;108|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002390!2.00e-46!102;UBERON:0003061!2.00e-46!102;UBERON:0002193!1.75e-42!112;UBERON:0002371!2.30e-38!80;UBERON:0007023!7.78e-36!115;UBERON:0001474!3.56e-34!86;UBERON:0002405!2.61e-30!115;UBERON:0004765!7.69e-28!101;UBERON:0001434!7.69e-28!101;UBERON:0003081!1.32e-16!216;UBERON:0002204!2.07e-11!167;UBERON:0001049!6.20e-10!57;UBERON:0005068!6.20e-10!57;UBERON:0006241!6.20e-10!57;UBERON:0007135!6.20e-10!57;UBERON:0002780!2.35e-08!41;UBERON:0001890!2.35e-08!41;UBERON:0006240!2.35e-08!41;UBERON:0000062!3.76e-08!511;UBERON:0003080!5.23e-08!42;UBERON:0000178!1.21e-07!15;UBERON:0000179!1.21e-07!15;UBERON:0000463!1.21e-07!15;UBERON:0002616!1.38e-07!59;UBERON:0001893!2.37e-07!34;UBERON:0002020!3.06e-07!34;UBERON:0003528!3.06e-07!34;UBERON:0002791!6.08e-07!33;UBERON:0000479!6.58e-07!787|ontology_enrichment_uberon_v019=UBERON:0000178;3.81e-09;15!UBERON:0000179;3.81e-09;15!UBERON:0000463;3.81e-09;15!UBERON:0002390;5.75e-07;32|ontology_enrichment_uberon_v019_2=UBERON:0002390,1.35e-87,98;UBERON:0003061,1.35e-87,98;UBERON:0002371,3.24e-80,76;UBERON:0002193,3.84e-78,108;UBERON:0001474,2.09e-73,82;UBERON:0002405,9.60e-69,93;UBERON:0004765,1.01e-65,90;UBERON:0001434,7.78e-58,100;UBERON:0003081,4.92e-39,203;UBERON:0002204,1.20e-30,167;UBERON:0000926,1.54e-21,315;UBERON:0004120,1.54e-21,315;UBERON:0006603,1.54e-21,315;UBERON:0002384,2.09e-11,371;UBERON:0000178,2.96e-09,15;UBERON:0000179,2.96e-09,15;UBERON:0000463,2.96e-09,15;UBERON:0000923,3.22e-08,560;UBERON:0010316,3.22e-08,560;UBERON:0005291,3.22e-08,560;UBERON:0006598,3.22e-08,560;UBERON:0010317,3.22e-08,560;UBERON:0002532,3.22e-08,560;UBERON:0002050,4.81e-08,564;UBERON:0005423,2.50e-07,581;UBERON:0000922,6.90e-07,592|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.14691421479123,1.15148819429164,2.01260960310899,0,0,0,0,0,0.293600439334847,1.10799081706375,1.40381113229099,0.868043482863407,7.16529517567758,4.21061765824673,6.18181362322048,6.68831898385998,2.64513160582167,5.33684934613196,2.32429036905685,2.46700732813095,0.929119112685311,8.91846416198666,6.91633907628572,3.54723344832878,1.37898272294647,1.29096936716765,1.35426486594342,2.44715041405386,2.72906150057846,1.79778787556068,3.97909060082173,2.88836124368484,3.83602275479425,16.4925650093358,12.3667467725412,7.2458207590558,1.16083695451434,1.70215567407342,0,5.7787193009051,5.21482918420201,6.08128765174327,1.81619850790011,0,1.89877432464531,4.013850439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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=843 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1500 | |||
|TSSclassifier=S | |||
|UniProt=Q92851,Q68HC0 | |||
|association_with_transcript=0bp_to_ENST00000286186,ENST00000360132,NM_001206524,NM_001206542,NM_001230,NM_032974,NM_032976,NM_032977,uc002uxi.1,uc002uxj.1,uc002uxk.1,uc002uxl.1,uc002uxm.1,uc010fta.1,uc010zhn.1_5end | |||
|coexpression_cluster_id=C7 | |||
|description=CAGE_peak_3_at_CASP10_5end | |||
|id=chr2:202047596..202047621,+ | |||
|ontology_enrichment_celltype=CL:0002194!1.07e-50!63;CL:0000576!1.07e-50!63;CL:0000040!1.07e-50!63;CL:0000559!1.07e-50!63;CL:0002009!1.80e-48!65;CL:0000766!1.78e-45!76;CL:0000557!1.92e-44!71;CL:0000839!1.81e-43!70;CL:0002057!2.36e-43!42;CL:0000860!2.48e-39!45;CL:0000763!2.23e-33!112;CL:0000049!2.23e-33!112;CL:0002087!1.31e-28!119;CL:0000738!7.45e-25!140;CL:0000037!3.28e-23!172;CL:0000566!3.28e-23!172;CL:0002031!3.71e-23!124;CL:0002032!1.22e-21!165;CL:0000837!1.22e-21!165;CL:0000988!1.65e-20!182;CL:0002393!2.42e-11!9;CL:0002397!2.42e-11!9 | |||
|ontology_enrichment_celltype_v019=CL:0000860;9.57e-61;33!CL:0002057;9.57e-61;33!CL:0000473;9.86e-61;39!CL:0000234;9.86e-61;39!CL:0000576;2.11e-56;48!CL:0000766;3.17e-38;69!CL:0000763;7.90e-20;100!CL:0002087;4.45e-15;104!CL:0000738;1.21e-12;136!CL:0000235;2.40e-11;6!CL:0002393;5.28e-11;6!CL:0002397;5.28e-11;6!CL:0002619;1.64e-09;3!CL:0000875;2.28e-09;3!CL:0002396;2.28e-09;3!CL:0000767;1.86e-08;3!CL:0000988;5.47e-08;177!CL:0000226;7.96e-08;3!CL:0000842;7.96e-08;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002194,9.56e-103,59;CL:0000576,9.56e-103,59;CL:0000040,9.56e-103,59;CL:0000559,9.56e-103,59;CL:0002009,5.52e-99,61;CL:0000473,4.58e-95,48;CL:0000234,4.58e-95,48;CL:0000766,8.32e-93,72;CL:0000557,1.09e-92,67;CL:0000839,1.46e-90,66;CL:0000860,8.24e-85,42;CL:0002057,8.24e-85,42;CL:0000763,3.90e-62,108;CL:0000049,3.90e-62,108;CL:0002087,4.04e-55,115;CL:0000738,1.76e-50,136;CL:0002031,5.84e-46,120;CL:0000037,2.66e-41,168;CL:0002032,1.22e-38,161;CL:0000837,1.22e-38,161;CL:0000988,1.89e-38,177;CL:0002393,2.41e-18,9;CL:0002397,2.41e-18,9;CL:0000134,6.29e-12,354;CL:0002320,2.01e-11,361;CL:0000235,3.24e-11,6;CL:0000219,1.18e-09,386;CL:0002619,1.84e-09,3;CL:0000875,2.11e-09,3;CL:0002396,2.11e-09,3;CL:0000767,3.16e-08,3;CL:0000226,7.06e-08,3;CL:0000842,7.06e-08,3;CL:0000048,1.59e-07,427;CL:0000723,3.11e-07,433;CL:0000034,7.32e-07,441 | |||
|ontology_enrichment_development_v019=CL:0002057;2.91e-60;42!CL:0000049;3.13e-21;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!2.00e-46!102;UBERON:0003061!2.00e-46!102;UBERON:0002193!1.75e-42!112;UBERON:0002371!2.30e-38!80;UBERON:0007023!7.78e-36!115;UBERON:0001474!3.56e-34!86;UBERON:0002405!2.61e-30!115;UBERON:0004765!7.69e-28!101;UBERON:0001434!7.69e-28!101;UBERON:0003081!1.32e-16!216;UBERON:0002204!2.07e-11!167;UBERON:0001049!6.20e-10!57;UBERON:0005068!6.20e-10!57;UBERON:0006241!6.20e-10!57;UBERON:0007135!6.20e-10!57;UBERON:0002780!2.35e-08!41;UBERON:0001890!2.35e-08!41;UBERON:0006240!2.35e-08!41;UBERON:0000062!3.76e-08!511;UBERON:0003080!5.23e-08!42;UBERON:0000178!1.21e-07!15;UBERON:0000179!1.21e-07!15;UBERON:0000463!1.21e-07!15;UBERON:0002616!1.38e-07!59;UBERON:0001893!2.37e-07!34;UBERON:0002020!3.06e-07!34;UBERON:0003528!3.06e-07!34;UBERON:0002791!6.08e-07!33;UBERON:0000479!6.58e-07!787 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;3.81e-09;15!UBERON:0000179;3.81e-09;15!UBERON:0000463;3.81e-09;15!UBERON:0002390;5.75e-07;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,1.35e-87,98;UBERON:0003061,1.35e-87,98;UBERON:0002371,3.24e-80,76;UBERON:0002193,3.84e-78,108;UBERON:0001474,2.09e-73,82;UBERON:0002405,9.60e-69,93;UBERON:0004765,1.01e-65,90;UBERON:0001434,7.78e-58,100;UBERON:0003081,4.92e-39,203;UBERON:0002204,1.20e-30,167;UBERON:0000926,1.54e-21,315;UBERON:0004120,1.54e-21,315;UBERON:0006603,1.54e-21,315;UBERON:0002384,2.09e-11,371;UBERON:0000178,2.96e-09,15;UBERON:0000179,2.96e-09,15;UBERON:0000463,2.96e-09,15;UBERON:0000923,3.22e-08,560;UBERON:0010316,3.22e-08,560;UBERON:0005291,3.22e-08,560;UBERON:0006598,3.22e-08,560;UBERON:0010317,3.22e-08,560;UBERON:0002532,3.22e-08,560;UBERON:0002050,4.81e-08,564;UBERON:0005423,2.50e-07,581;UBERON:0000922,6.90e-07,592 | |||
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|short_description=p3@CASP10 | |||
}} |
Revision as of 16:01, 12 September 2013
Short description: | p3@CASP10 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_CASP10_5end |
Coexpression cluster: | C7_CD14_Eosinophils_Neutrophils_Smooth_Basophils_Macrophage_Mast |
Association with transcript: | 0bp_to_ENST00000286186, ENST00000360132, NM_001206524, NM_001206542, NM_001230, NM_032974, NM_032976, NM_032977, uc002uxi.1, uc002uxj.1, uc002uxk.1, uc002uxl.1, uc002uxm.1, uc010fta.1, uc010zhn.1_5end |
EntrezGene: | CASP10 |
HGNC: | 1500 |
UniProt: | Q92851Q68HC0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 1.35e-87 | 98 |
blood island | 1.35e-87 | 98 |
bone marrow | 3.24e-80 | 76 |
hemolymphoid system | 3.84e-78 | 108 |
bone element | 2.09e-73 | 82 |
immune system | 9.60e-69 | 93 |
skeletal element | 1.01e-65 | 90 |
skeletal system | 7.78e-58 | 100 |
lateral plate mesoderm | 4.92e-39 | 203 |
musculoskeletal system | 1.20e-30 | 167 |
mesoderm | 1.54e-21 | 315 |
mesoderm-derived structure | 1.54e-21 | 315 |
presumptive mesoderm | 1.54e-21 | 315 |
connective tissue | 2.09e-11 | 371 |
blood | 2.96e-09 | 15 |
haemolymphatic fluid | 2.96e-09 | 15 |
organism substance | 2.96e-09 | 15 |
germ layer | 3.22e-08 | 560 |
germ layer / neural crest | 3.22e-08 | 560 |
embryonic tissue | 3.22e-08 | 560 |
presumptive structure | 3.22e-08 | 560 |
germ layer / neural crest derived structure | 3.22e-08 | 560 |
epiblast (generic) | 3.22e-08 | 560 |
embryonic structure | 4.81e-08 | 564 |
developing anatomical structure | 2.50e-07 | 581 |
embryo | 6.90e-07 | 592 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.