FFCP PHASE1:Mm9::chr12:70576497..70576542,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=76062|HGNC=|MCL_coexpression_id=177|UniProt=|association_with_transcript=0bp_to_NR_038060,NR_038061,uc007nsk.1_5end|description=CAGE_peak_1_at_5830428M24Rik_5end|id=chr12:70576497..70576542,-|ontology_enrichment_celltype=CL:0000838!8.08e-08!12;CL:0000084!3.84e-07!11;CL:0000827!3.84e-07!11;CL:0000542!7.79e-07!13;CL:0000051!7.79e-07!13|ontology_enrichment_celltype_v019_2=CL:0000838,5.97e-11,12;CL:0002031,5.35e-10,25;CL:0000542,6.76e-10,13;CL:0000051,6.76e-10,13;CL:0000084,8.58e-10,11;CL:0000827,8.58e-10,11;CL:0000791,5.46e-08,9;CL:0000789,5.46e-08,9;CL:0002420,5.46e-08,9;CL:0002419,5.46e-08,9;CL:0000790,5.46e-08,9;CL:0000624,5.20e-07,8;CL:0000738,5.99e-07,17;CL:0002087,5.99e-07,17;CL:0000988,6.92e-07,32;CL:0002032,6.92e-07,32;CL:0000037,6.92e-07,32;CL:0000837,6.92e-07,32|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004177!3.41e-13!29;UBERON:0001004!1.24e-12!42;UBERON:0000065!4.59e-12!41;UBERON:0002193!1.42e-11!48;UBERON:0000077!5.40e-11!97;UBERON:0004119!7.14e-11!130;UBERON:0000925!7.14e-11!130;UBERON:0006595!7.14e-11!130;UBERON:0003408!1.10e-10!24;UBERON:0001007!1.32e-10!128;UBERON:0001555!1.32e-10!128;UBERON:0007026!1.32e-10!128;UBERON:0002370!4.25e-10!23;UBERON:0000974!4.25e-10!23;UBERON:0004807!4.25e-10!23;UBERON:0005058!4.25e-10!23;UBERON:0003351!4.25e-10!23;UBERON:0009113!4.25e-10!23;UBERON:0003295!4.25e-10!23;UBERON:0009722!4.25e-10!23;UBERON:0005562!4.25e-10!23;UBERON:0007690!4.25e-10!23;UBERON:0006562!4.40e-10!24;UBERON:0001557!4.40e-10!24;UBERON:0001042!4.40e-10!24;UBERON:0008814!4.40e-10!24;UBERON:0009145!4.40e-10!24;UBERON:0002390!5.38e-10!45;UBERON:0003061!5.38e-10!45;UBERON:0004921!7.68e-10!126;UBERON:0004185!7.68e-10!126;UBERON:0001041!1.29e-09!92;UBERON:0000072!1.49e-09!27;UBERON:0003104!3.60e-09!131;UBERON:0009142!3.60e-09!131;UBERON:0002405!3.95e-08!70;UBERON:0005057!9.14e-08!51;UBERON:0000063!5.33e-07!35;UBERON:0005911!6.72e-07!69;UBERON:0007023!7.61e-07!51|ontology_enrichment_uberon_v019_2=UBERON:0002193,5.62e-20,48;UBERON:0002405,5.62e-20,48;UBERON:0004177,1.40e-19,29;UBERON:0005057,1.40e-19,29;UBERON:0000077,3.58e-18,35;UBERON:0002390,3.73e-17,45;UBERON:0003061,3.73e-17,45;UBERON:0003408,1.95e-16,24;UBERON:0002370,2.02e-15,23;UBERON:0000974,2.02e-15,23;UBERON:0004807,2.02e-15,23;UBERON:0005058,2.02e-15,23;UBERON:0003351,2.02e-15,23;UBERON:0009113,2.02e-15,23;UBERON:0003295,2.02e-15,23;UBERON:0009722,2.02e-15,23;UBERON:0005562,2.02e-15,23;UBERON:0007690,2.02e-15,23;UBERON:0001004,8.46e-15,42;UBERON:0006562,1.50e-14,24;UBERON:0001557,1.50e-14,24;UBERON:0001042,1.50e-14,24;UBERON:0008814,1.50e-14,24;UBERON:0009145,1.50e-14,24;UBERON:0000065,6.47e-14,41;UBERON:0000072,2.45e-12,27;UBERON:0007811,3.53e-10,36;UBERON:0000926,2.06e-09,120;UBERON:0004120,2.06e-09,120;UBERON:0006603,2.06e-09,120;UBERON:0001041,3.69e-09,80;UBERON:0003081,5.24e-09,87;UBERON:0000153,1.25e-07,43;UBERON:0003887,2.15e-07,10;UBERON:0007023,6.00e-07,51;UBERON:0001007,7.98e-07,116;UBERON:0001555,7.98e-07,116;UBERON:0007026,7.98e-07,116|phase1_expression=0,0,0,0.30246421130683,0,0.33575854382378,0.233612640595526,6.06879620175408,0.563154888606667,1.87251621057595,1.54096171402954,1.19658238493005,10.9568467155972,9.09172185157573,2.33176833270964,3.44207954562704,0,16.4040325986284,18.0991052359575,14.8536378129311,1.87095238332354,2.48227378002213,2.61199789138935,2.3998863419011,1.60586496747019,0.57423196411502,0,0.215471232685889,0.190023419456374,0.252030129759931,0.443461021310609,0,0,0,0,0,0,14.6486070757918,2.3440060335714,13.088093599345,19.4116391050235,21.1744100337118,19.4204141212461,0.125896817975577,0,0,0,0,0,0,0,0,7.55021727259814,2.90144856804538,4.03312558970957,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127687338085188,0,0,0,0,0,0,0,0,0,0,0,0,0.289864488701678,0,0,0,0,0,1.40444420131752,0,0,0,0.14084341977668,0,0,0,0.432982082022428,0.253359865475099,0,0.79928715803342,31.8493596886021,0.29688427812965,0,0,0,0,0,0,0,0.722996784599558,1.76922110389975,0.161766849947409,1.32504911076236,1.45462575940567,5.59175283654366,0,0,1.02182822083437,0,0.599902730993408,0.127070227073065,0,0,0,0,0,0,0,0,2.11491850037158,8.08712826987759,1.89397670297827,0,0,0,0,0,0,0,0.258703370739016,0,0,0,0,0,0,0,0,0.702213187313235,0,0,0,0,0,0,0,0,0,0,0,0,0,0.324275238183423,0.146199987425332,0,0,0,0,0.660837565967596,0.528901133327089,0,0,0,0,0,0.190225626112559,0.474529061544512,0,0.502670417600539,0,0.38992817423824,0,0.648414149624083,0.796565093017469,0,0,0,0,0,0,0,0.295220295959204,0.156998727841375,0.123397163921801,0,0,0.196558995113203,0,0,0.241177159752417,0.50925170356284,0.287696137450811,0.486405680325106,0,0,0.744281895337007,0.312037673114561,0,0.179397413521912,0.482443521363367,6.65111484599777,0,0,0,0.234690248288502,0.502518772325447,1.19021820443007,0.780534591431195,1.26108115284953,0.8858587585951,1.2756381492599,5.07976275618788,5.00786447411097,4.19482269886384,0,0,3.93411418415229,2.48343071674259,0,0,0,0.757412781613119,0.315508219416257,0,0,0,0,0,0,0,0,0.321321316421807,1.27746076687442,0,0.162886959353576,2.14461159864296,1.32745138339963,0,0,0.188605079755898,0.295301892880773,0,0,0,0,0.632073515871632,0,0,0,0,0,0,0,0,0,0,0.23467170806371,0.21183207086382,8.82113592219848,0.49465875882444,0,0.120625849856312,0.119372344003136,0.164140899745061,0,0,4.78438466233988,0.412773735926445,2.03713980106683,3.01389531207506,5.60446333656203,7.0921233694022,0.169978429993855,0.559805809294632,0.552799895217695,1.90934123603023,0,0.203319467126849,0.216010681643603,0.209088296014469,0,0.134864346384821,0.247960367176008,1.04702376793612,0.259229946583586,4.34937519160848,0,0,0,0.194451188344048,0,0,0,0,0,0,0.288030006257865,9.79634473947353,0.405450430580328,1.23253148597793,3.63778304337826,3.93858730468459,5.76175928865668,6.73094517311826,6.64602872285597,10.3995443446592,8.91619637863498,10.7884018096419,9.35595655101623,14.1431407211284,12.0383209247016,0.226730383615211,0,0,0,0.579568782096571,2.064507229963,1.28206136987086,1.2862102744744,4.51414893631827,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183843508450014,0.44449345560323,0,0,0,0.25347929989024,0.188626341386076,0,0.320125762024346,0.229741875822453,0,0.231768651889711,0,0,0.441596760403192,0,0.532427418478012,0,0,0,0.169229215783353,0.182927972872773,0.526139422875686,0,0,0.593175090620871,0.394017929502254,0,0.154936841185966,0.192906610981141,0,0.701794825336225,0.429742108096597,0.191288332068843,0.441182838239031,0.463735671240843|short_description=p1@5830428M24Rik}} | ||
|EntrezGene=76062 | |||
|HGNC= | |||
|MCL_coexpression_id=177 | |||
|UniProt= | |||
|association_with_transcript=0bp_to_NR_038060,NR_038061,uc007nsk.1_5end | |||
|description=CAGE_peak_1_at_5830428M24Rik_5end | |||
|id=chr12:70576497..70576542,- | |||
|ontology_enrichment_celltype=CL:0000838!8.08e-08!12;CL:0000084!3.84e-07!11;CL:0000827!3.84e-07!11;CL:0000542!7.79e-07!13;CL:0000051!7.79e-07!13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000838,5.97e-11,12;CL:0002031,5.35e-10,25;CL:0000542,6.76e-10,13;CL:0000051,6.76e-10,13;CL:0000084,8.58e-10,11;CL:0000827,8.58e-10,11;CL:0000791,5.46e-08,9;CL:0000789,5.46e-08,9;CL:0002420,5.46e-08,9;CL:0002419,5.46e-08,9;CL:0000790,5.46e-08,9;CL:0000624,5.20e-07,8;CL:0000738,5.99e-07,17;CL:0002087,5.99e-07,17;CL:0000988,6.92e-07,32;CL:0002032,6.92e-07,32;CL:0000037,6.92e-07,32;CL:0000837,6.92e-07,32 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004177!3.41e-13!29;UBERON:0001004!1.24e-12!42;UBERON:0000065!4.59e-12!41;UBERON:0002193!1.42e-11!48;UBERON:0000077!5.40e-11!97;UBERON:0004119!7.14e-11!130;UBERON:0000925!7.14e-11!130;UBERON:0006595!7.14e-11!130;UBERON:0003408!1.10e-10!24;UBERON:0001007!1.32e-10!128;UBERON:0001555!1.32e-10!128;UBERON:0007026!1.32e-10!128;UBERON:0002370!4.25e-10!23;UBERON:0000974!4.25e-10!23;UBERON:0004807!4.25e-10!23;UBERON:0005058!4.25e-10!23;UBERON:0003351!4.25e-10!23;UBERON:0009113!4.25e-10!23;UBERON:0003295!4.25e-10!23;UBERON:0009722!4.25e-10!23;UBERON:0005562!4.25e-10!23;UBERON:0007690!4.25e-10!23;UBERON:0006562!4.40e-10!24;UBERON:0001557!4.40e-10!24;UBERON:0001042!4.40e-10!24;UBERON:0008814!4.40e-10!24;UBERON:0009145!4.40e-10!24;UBERON:0002390!5.38e-10!45;UBERON:0003061!5.38e-10!45;UBERON:0004921!7.68e-10!126;UBERON:0004185!7.68e-10!126;UBERON:0001041!1.29e-09!92;UBERON:0000072!1.49e-09!27;UBERON:0003104!3.60e-09!131;UBERON:0009142!3.60e-09!131;UBERON:0002405!3.95e-08!70;UBERON:0005057!9.14e-08!51;UBERON:0000063!5.33e-07!35;UBERON:0005911!6.72e-07!69;UBERON:0007023!7.61e-07!51 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,5.62e-20,48;UBERON:0002405,5.62e-20,48;UBERON:0004177,1.40e-19,29;UBERON:0005057,1.40e-19,29;UBERON:0000077,3.58e-18,35;UBERON:0002390,3.73e-17,45;UBERON:0003061,3.73e-17,45;UBERON:0003408,1.95e-16,24;UBERON:0002370,2.02e-15,23;UBERON:0000974,2.02e-15,23;UBERON:0004807,2.02e-15,23;UBERON:0005058,2.02e-15,23;UBERON:0003351,2.02e-15,23;UBERON:0009113,2.02e-15,23;UBERON:0003295,2.02e-15,23;UBERON:0009722,2.02e-15,23;UBERON:0005562,2.02e-15,23;UBERON:0007690,2.02e-15,23;UBERON:0001004,8.46e-15,42;UBERON:0006562,1.50e-14,24;UBERON:0001557,1.50e-14,24;UBERON:0001042,1.50e-14,24;UBERON:0008814,1.50e-14,24;UBERON:0009145,1.50e-14,24;UBERON:0000065,6.47e-14,41;UBERON:0000072,2.45e-12,27;UBERON:0007811,3.53e-10,36;UBERON:0000926,2.06e-09,120;UBERON:0004120,2.06e-09,120;UBERON:0006603,2.06e-09,120;UBERON:0001041,3.69e-09,80;UBERON:0003081,5.24e-09,87;UBERON:0000153,1.25e-07,43;UBERON:0003887,2.15e-07,10;UBERON:0007023,6.00e-07,51;UBERON:0001007,7.98e-07,116;UBERON:0001555,7.98e-07,116;UBERON:0007026,7.98e-07,116 | |||
|phase1_expression=0,0,0,0.30246421130683,0,0.33575854382378,0.233612640595526,6.06879620175408,0.563154888606667,1.87251621057595,1.54096171402954,1.19658238493005,10.9568467155972,9.09172185157573,2.33176833270964,3.44207954562704,0,16.4040325986284,18.0991052359575,14.8536378129311,1.87095238332354,2.48227378002213,2.61199789138935,2.3998863419011,1.60586496747019,0.57423196411502,0,0.215471232685889,0.190023419456374,0.252030129759931,0.443461021310609,0,0,0,0,0,0,14.6486070757918,2.3440060335714,13.088093599345,19.4116391050235,21.1744100337118,19.4204141212461,0.125896817975577,0,0,0,0,0,0,0,0,7.55021727259814,2.90144856804538,4.03312558970957,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127687338085188,0,0,0,0,0,0,0,0,0,0,0,0,0.289864488701678,0,0,0,0,0,1.40444420131752,0,0,0,0.14084341977668,0,0,0,0.432982082022428,0.253359865475099,0,0.79928715803342,31.8493596886021,0.29688427812965,0,0,0,0,0,0,0,0.722996784599558,1.76922110389975,0.161766849947409,1.32504911076236,1.45462575940567,5.59175283654366,0,0,1.02182822083437,0,0.599902730993408,0.127070227073065,0,0,0,0,0,0,0,0,2.11491850037158,8.08712826987759,1.89397670297827,0,0,0,0,0,0,0,0.258703370739016,0,0,0,0,0,0,0,0,0.702213187313235,0,0,0,0,0,0,0,0,0,0,0,0,0,0.324275238183423,0.146199987425332,0,0,0,0,0.660837565967596,0.528901133327089,0,0,0,0,0,0.190225626112559,0.474529061544512,0,0.502670417600539,0,0.38992817423824,0,0.648414149624083,0.796565093017469,0,0,0,0,0,0,0,0.295220295959204,0.156998727841375,0.123397163921801,0,0,0.196558995113203,0,0,0.241177159752417,0.50925170356284,0.287696137450811,0.486405680325106,0,0,0.744281895337007,0.312037673114561,0,0.179397413521912,0.482443521363367,6.65111484599777,0,0,0,0.234690248288502,0.502518772325447,1.19021820443007,0.780534591431195,1.26108115284953,0.8858587585951,1.2756381492599,5.07976275618788,5.00786447411097,4.19482269886384,0,0,3.93411418415229,2.48343071674259,0,0,0,0.757412781613119,0.315508219416257,0,0,0,0,0,0,0,0,0.321321316421807,1.27746076687442,0,0.162886959353576,2.14461159864296,1.32745138339963,0,0,0.188605079755898,0.295301892880773,0,0,0,0,0.632073515871632,0,0,0,0,0,0,0,0,0,0,0.23467170806371,0.21183207086382,8.82113592219848,0.49465875882444,0,0.120625849856312,0.119372344003136,0.164140899745061,0,0,4.78438466233988,0.412773735926445,2.03713980106683,3.01389531207506,5.60446333656203,7.0921233694022,0.169978429993855,0.559805809294632,0.552799895217695,1.90934123603023,0,0.203319467126849,0.216010681643603,0.209088296014469,0,0.134864346384821,0.247960367176008,1.04702376793612,0.259229946583586,4.34937519160848,0,0,0,0.194451188344048,0,0,0,0,0,0,0.288030006257865,9.79634473947353,0.405450430580328,1.23253148597793,3.63778304337826,3.93858730468459,5.76175928865668,6.73094517311826,6.64602872285597,10.3995443446592,8.91619637863498,10.7884018096419,9.35595655101623,14.1431407211284,12.0383209247016,0.226730383615211,0,0,0,0.579568782096571,2.064507229963,1.28206136987086,1.2862102744744,4.51414893631827,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183843508450014,0.44449345560323,0,0,0,0.25347929989024,0.188626341386076,0,0.320125762024346,0.229741875822453,0,0.231768651889711,0,0,0.441596760403192,0,0.532427418478012,0,0,0,0.169229215783353,0.182927972872773,0.526139422875686,0,0,0.593175090620871,0.394017929502254,0,0.154936841185966,0.192906610981141,0,0.701794825336225,0.429742108096597,0.191288332068843,0.441182838239031,0.463735671240843 | |||
|short_description=p1@5830428M24Rik | |||
}} |
Revision as of 23:03, 12 September 2013
Short description: | p1@5830428M24Rik |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_5830428M24Rik_5end |
Coexpression cluster: | MCL_coexpression_mm9:177 |
Association with transcript: | 0bp_to_NR_038060, NR_038061, uc007nsk.1_5end |
EntrezGene: | 5830428M24Rik |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphoid lineage restricted progenitor cell | 5.97e-11 | 12 |
hematopoietic lineage restricted progenitor cell | 5.35e-10 | 25 |
lymphocyte | 6.76e-10 | 13 |
common lymphoid progenitor | 6.76e-10 | 13 |
T cell | 8.58e-10 | 11 |
pro-T cell | 8.58e-10 | 11 |
mature alpha-beta T cell | 5.46e-08 | 9 |
alpha-beta T cell | 5.46e-08 | 9 |
immature T cell | 5.46e-08 | 9 |
mature T cell | 5.46e-08 | 9 |
immature alpha-beta T cell | 5.46e-08 | 9 |
CD4-positive, alpha-beta T cell | 5.20e-07 | 8 |
leukocyte | 5.99e-07 | 17 |
nongranular leukocyte | 5.99e-07 | 17 |
hematopoietic cell | 6.92e-07 | 32 |
hematopoietic oligopotent progenitor cell | 6.92e-07 | 32 |
hematopoietic stem cell | 6.92e-07 | 32 |
hematopoietic multipotent progenitor cell | 6.92e-07 | 32 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.