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FFCP PHASE1:Mm9::chr13:29044875..29044928,-: Difference between revisions

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{{FFCP
{{FFCP|EntrezGene=20677|HGNC=|MCL_coexpression_id=100|UniProt=E9QM41,E9Q0Q6|association_with_transcript=0bp_to_ENSMUST00000110326,ENSMUST00000168068_5end|description=CAGE_peak_4_at_Sox4_5end|id=chr13:29044875..29044928,-|ontology_enrichment_celltype=CL:0000221!8.36e-13!44;CL:0000133!8.36e-13!44;CL:0000393!1.35e-12!39;CL:0000211!1.35e-12!39;CL:0000540!1.58e-12!33;CL:0000047!1.58e-12!33;CL:0000031!1.58e-12!33;CL:0000404!1.58e-12!33;CL:0002319!2.04e-12!43;CL:0000055!5.67e-12!50;CL:0000117!5.20e-10!23;CL:0000337!5.20e-10!23;CL:0002321!2.35e-08!70;CL:0000220!2.35e-08!70|ontology_enrichment_celltype_v019_2=CL:0000117,3.81e-22,23;CL:0000337,3.81e-22,23;CL:0000393,1.70e-19,39;CL:0000211,1.70e-19,39;CL:0000540,8.56e-18,33;CL:0000047,8.56e-18,33;CL:0000031,8.56e-18,33;CL:0000404,8.56e-18,33;CL:0002319,5.85e-14,43;CL:0002321,1.39e-13,70;CL:0000221,1.61e-13,44;CL:0000133,1.61e-13,44;CL:0002609,5.65e-13,6;CL:0000723,2.36e-09,91;CL:0000048,2.36e-09,91;CL:0000034,2.35e-08,97;CL:0002608,3.87e-07,3;CL:0000120,4.64e-07,3;CL:0002613,8.67e-07,3|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!5.95e-11!75;UBERON:0001016!5.95e-11!75;UBERON:0002020!2.99e-10!34;UBERON:0001017!3.73e-10!73;UBERON:0005743!3.73e-10!73;UBERON:0004121!3.13e-09!102;UBERON:0000924!3.13e-09!102;UBERON:0006601!3.13e-09!102;UBERON:0002791!1.13e-07!29;UBERON:0003528!1.13e-07!29;UBERON:0001893!1.13e-07!29|ontology_enrichment_uberon_v019_2=UBERON:0002020,1.71e-20,34;UBERON:0003528,6.98e-14,29;UBERON:0002791,6.98e-14,29;UBERON:0001893,6.98e-14,29;UBERON:0001016,1.20e-13,75;UBERON:0001017,5.44e-13,73;UBERON:0004121,6.31e-12,95;UBERON:0000924,6.31e-12,95;UBERON:0006601,6.31e-12,95;UBERON:0001049,1.87e-11,52;UBERON:0005068,1.87e-11,52;UBERON:0006241,1.87e-11,52;UBERON:0007135,1.87e-11,52;UBERON:0002346,2.18e-11,64;UBERON:0003075,2.18e-11,64;UBERON:0007284,2.18e-11,64;UBERON:0000956,2.20e-11,21;UBERON:0001869,2.20e-11,21;UBERON:0000203,2.20e-11,21;UBERON:0000073,7.90e-11,54;UBERON:0010371,3.69e-10,73;UBERON:0001948,2.82e-09,5;UBERON:0002315,2.82e-09,5;UBERON:0002780,2.88e-09,39;UBERON:0001890,2.88e-09,39;UBERON:0006240,2.88e-09,39;UBERON:0003080,6.19e-09,40;UBERON:0003056,1.80e-08,49;UBERON:0000955,4.52e-08,47;UBERON:0006238,4.52e-08,47;UBERON:0002619,9.64e-08,17;UBERON:0002240,1.18e-07,6;UBERON:0005174,1.18e-07,6;UBERON:0001137,1.18e-07,6;UBERON:0002616,2.92e-07,46|phase1_expression=0.640595388419176,0,0.454999239389536,0,0,0.671517087647559,0.700837921786577,0.516493293766305,2.81577444303333,4.21316147379588,5.82141091966717,5.82336760665956,0.171200729931206,0.524522414513984,0,0,0,0.157731082679119,0,0,0.255129870453209,0.397163804803541,0.783599367416806,0.319984845586813,0,0,0,0.430942465371778,0,0,0.221730510655305,0,0,0,0,0,0.408338712524738,0,0,0,0,0,0,1.1330713617802,1.4192770370732,2.20256102594018,0,0.65407546914134,0.439372365468944,0.388859798148567,0.419959264876088,0,0,0,0.336093799142464,0.771778308107841,0,0,3.84401275633236,2.64495489636016,5.07065122804943,0.338844532069132,0,0.449949858640699,0,0,0.898800331555214,0.768436610643109,4.56234294157302,10.3954572515402,5.46844899513593,1.42825492201902,2.42955395046775,3.67472397644862,3.25874601462004,4.5960939330501,0,0,0.768032666281217,3.03338461779446,3.11057988248193,2.08365348222704,0.558365998002762,0.56276261003168,0.45839474333043,1.76777151284201,1.42371680799103,2.79599168737951,1.66597625333005,0.831287161174641,1.15945795480671,0,0,0,0,0,0.280888840263504,0.681721290312231,0.779358013808606,0.35333957451034,0.845060518660083,0,0,0,1.29894624606728,1.26679932737549,2.02209778005913,0.22836775943812,0,0,0.346970653532272,0.304465478312141,0,0,0,0.376999773989026,0.247194967734374,0,0,0.323533699894818,0,0,0,0,0.209446706813455,0,0.838705871541442,0.599902730993408,0.508280908292259,0.299581278809645,0,1.00523481690292,0.347648640384553,1.79000820131231,0.20778804455956,0.162241263067758,0.305518091550949,0.248813941220186,1.0108910337347,0.210441855886474,0.130120442962704,0.459804208866946,0.360124259610698,0.150704817835715,1.08858398642125,1.2811372028485,0.749613796477831,0.258703370739016,0.431135985865684,0.378212160335639,0.703804496655795,0.219195732427575,0,0,0,0.398068533636986,0,0,0,0.621377317606506,0.703578179943289,0.180062061461015,0.473489471170421,0.393528463494808,0.308534225774757,0.232533944750408,0.804820204198858,0.350296027101508,0.329119699826961,0,0.162137619091711,0.292399974850665,0.439100230582101,0,0.210289948564127,1.54356918568927,0,0,0.213288250535234,0,0,0.80673409849337,0.667134131534611,0.380451252225118,0,0,0,0,0.19496408711912,0.898819408654221,0,0,0.569003702859245,0.456994050438915,0,0.203651327845314,0,0.561086559122548,0.758838445491087,0.442830443938806,0,0.123397163921801,0,0,0.196558995113203,0,0,0.241177159752417,0,0,0,0,1.43768206527355,0,0,0,0,0,0.184753190166605,0.189491411770485,0.162964976442026,0.509235257325564,0.469380496577004,0.502518772325447,0,0.585400943573396,0.3152702882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|EntrezGene=20677
|HGNC=
|MCL_coexpression_id=100
|UniProt=E9QM41,E9Q0Q6
|association_with_transcript=0bp_to_ENSMUST00000110326,ENSMUST00000168068_5end
|description=CAGE_peak_4_at_Sox4_5end
|id=chr13:29044875..29044928,-
|ontology_enrichment_celltype=CL:0000221!8.36e-13!44;CL:0000133!8.36e-13!44;CL:0000393!1.35e-12!39;CL:0000211!1.35e-12!39;CL:0000540!1.58e-12!33;CL:0000047!1.58e-12!33;CL:0000031!1.58e-12!33;CL:0000404!1.58e-12!33;CL:0002319!2.04e-12!43;CL:0000055!5.67e-12!50;CL:0000117!5.20e-10!23;CL:0000337!5.20e-10!23;CL:0002321!2.35e-08!70;CL:0000220!2.35e-08!70
|ontology_enrichment_celltype_v019_2=CL:0000117,3.81e-22,23;CL:0000337,3.81e-22,23;CL:0000393,1.70e-19,39;CL:0000211,1.70e-19,39;CL:0000540,8.56e-18,33;CL:0000047,8.56e-18,33;CL:0000031,8.56e-18,33;CL:0000404,8.56e-18,33;CL:0002319,5.85e-14,43;CL:0002321,1.39e-13,70;CL:0000221,1.61e-13,44;CL:0000133,1.61e-13,44;CL:0002609,5.65e-13,6;CL:0000723,2.36e-09,91;CL:0000048,2.36e-09,91;CL:0000034,2.35e-08,97;CL:0002608,3.87e-07,3;CL:0000120,4.64e-07,3;CL:0002613,8.67e-07,3
|ontology_enrichment_disease=
|ontology_enrichment_disease_v019_2=
|ontology_enrichment_uberon=UBERON:0000073!5.95e-11!75;UBERON:0001016!5.95e-11!75;UBERON:0002020!2.99e-10!34;UBERON:0001017!3.73e-10!73;UBERON:0005743!3.73e-10!73;UBERON:0004121!3.13e-09!102;UBERON:0000924!3.13e-09!102;UBERON:0006601!3.13e-09!102;UBERON:0002791!1.13e-07!29;UBERON:0003528!1.13e-07!29;UBERON:0001893!1.13e-07!29
|ontology_enrichment_uberon_v019_2=UBERON:0002020,1.71e-20,34;UBERON:0003528,6.98e-14,29;UBERON:0002791,6.98e-14,29;UBERON:0001893,6.98e-14,29;UBERON:0001016,1.20e-13,75;UBERON:0001017,5.44e-13,73;UBERON:0004121,6.31e-12,95;UBERON:0000924,6.31e-12,95;UBERON:0006601,6.31e-12,95;UBERON:0001049,1.87e-11,52;UBERON:0005068,1.87e-11,52;UBERON:0006241,1.87e-11,52;UBERON:0007135,1.87e-11,52;UBERON:0002346,2.18e-11,64;UBERON:0003075,2.18e-11,64;UBERON:0007284,2.18e-11,64;UBERON:0000956,2.20e-11,21;UBERON:0001869,2.20e-11,21;UBERON:0000203,2.20e-11,21;UBERON:0000073,7.90e-11,54;UBERON:0010371,3.69e-10,73;UBERON:0001948,2.82e-09,5;UBERON:0002315,2.82e-09,5;UBERON:0002780,2.88e-09,39;UBERON:0001890,2.88e-09,39;UBERON:0006240,2.88e-09,39;UBERON:0003080,6.19e-09,40;UBERON:0003056,1.80e-08,49;UBERON:0000955,4.52e-08,47;UBERON:0006238,4.52e-08,47;UBERON:0002619,9.64e-08,17;UBERON:0002240,1.18e-07,6;UBERON:0005174,1.18e-07,6;UBERON:0001137,1.18e-07,6;UBERON:0002616,2.92e-07,46
|phase1_expression=0.640595388419176,0,0.454999239389536,0,0,0.671517087647559,0.700837921786577,0.516493293766305,2.81577444303333,4.21316147379588,5.82141091966717,5.82336760665956,0.171200729931206,0.524522414513984,0,0,0,0.157731082679119,0,0,0.255129870453209,0.397163804803541,0.783599367416806,0.319984845586813,0,0,0,0.430942465371778,0,0,0.221730510655305,0,0,0,0,0,0.408338712524738,0,0,0,0,0,0,1.1330713617802,1.4192770370732,2.20256102594018,0,0.65407546914134,0.439372365468944,0.388859798148567,0.419959264876088,0,0,0,0.336093799142464,0.771778308107841,0,0,3.84401275633236,2.64495489636016,5.07065122804943,0.338844532069132,0,0.449949858640699,0,0,0.898800331555214,0.768436610643109,4.56234294157302,10.3954572515402,5.46844899513593,1.42825492201902,2.42955395046775,3.67472397644862,3.25874601462004,4.5960939330501,0,0,0.768032666281217,3.03338461779446,3.11057988248193,2.08365348222704,0.558365998002762,0.56276261003168,0.45839474333043,1.76777151284201,1.42371680799103,2.79599168737951,1.66597625333005,0.831287161174641,1.15945795480671,0,0,0,0,0,0.280888840263504,0.681721290312231,0.779358013808606,0.35333957451034,0.845060518660083,0,0,0,1.29894624606728,1.26679932737549,2.02209778005913,0.22836775943812,0,0,0.346970653532272,0.304465478312141,0,0,0,0.376999773989026,0.247194967734374,0,0,0.323533699894818,0,0,0,0,0.209446706813455,0,0.838705871541442,0.599902730993408,0.508280908292259,0.299581278809645,0,1.00523481690292,0.347648640384553,1.79000820131231,0.20778804455956,0.162241263067758,0.305518091550949,0.248813941220186,1.0108910337347,0.210441855886474,0.130120442962704,0.459804208866946,0.360124259610698,0.150704817835715,1.08858398642125,1.2811372028485,0.749613796477831,0.258703370739016,0.431135985865684,0.378212160335639,0.703804496655795,0.219195732427575,0,0,0,0.398068533636986,0,0,0,0.621377317606506,0.703578179943289,0.180062061461015,0.473489471170421,0.393528463494808,0.308534225774757,0.232533944750408,0.804820204198858,0.350296027101508,0.329119699826961,0,0.162137619091711,0.292399974850665,0.439100230582101,0,0.210289948564127,1.54356918568927,0,0,0.213288250535234,0,0,0.80673409849337,0.667134131534611,0.380451252225118,0,0,0,0,0.19496408711912,0.898819408654221,0,0,0.569003702859245,0.456994050438915,0,0.203651327845314,0,0.561086559122548,0.758838445491087,0.442830443938806,0,0.123397163921801,0,0,0.196558995113203,0,0,0.241177159752417,0,0,0,0,1.43768206527355,0,0,0,0,0,0.184753190166605,0.189491411770485,0.162964976442026,0.509235257325564,0.469380496577004,0.502518772325447,0,0.585400943573396,0.315270288212382,0.8858587585951,0.159454768657487,0.327726629431476,0.172684981865896,0.433947175744535,0,0,0.491764273019036,0,0,0.35163505977661,0.327869890753351,0,0.631016438832513,0.780877488593277,1.93881057959519,0.955875191810208,0.891194696329576,0.849229592366497,0.404810701674894,0.292255857911312,1.58115111178609,1.60660658210904,0.141940085208269,0.35613120733451,0.488660878060728,0.329940245945071,0,0,0.604647113929502,0.188605079755898,0,0.307435147943927,0,0,1.42598951353889,0,1.05418608574999,0,0,0.18006109403131,0.388076051348264,0.643011105094777,0.177340233642274,0.535106452806212,0,0.608929898229199,0.23467170806371,0,0.220528398054962,0.16488625294148,1.13025098687134,0.663442174209714,0.596861720015682,0.984845398470368,0.582961673259701,0.556275906031529,0,0.206386867963223,0.185194527369712,0,0.136694227721025,0.228778173206523,0.509935289981566,0.69975726161829,0.690999869022119,0,0,0.813277868507395,0.216010681643603,0.209088296014469,0.87345025498471,0.269728692769641,0.495920734352016,0.26175594198403,0.129614973291793,0,0,0.747582730219894,0.66183396182839,0.583353565032143,0.516639293910924,0,0.58678619322877,0.5208175393758,0.629156066554265,0.483168241652012,0,0.316011120628178,0.405450430580328,0.924398614483445,0.51968329191118,0.358053391334963,0.198681354781265,0.721172697119813,0.590758108698309,0.403865799792591,0.762068066549998,0.302478555410522,0.779663045918019,0.962118416403295,0.584384510907845,0,0.443971906748129,0.0897138566094757,0,0,0,0.183151624267265,0.428736758158132,0,0.564751842617067,1.84130094602871,0.572895513439397,0.68741272937475,2.05524755931193,0,1.35004500046361,1.80128481289688,2.71885445390523,0,0.62272408550506,0.399024873401031,0.341467211508268,0.243106717068294,0.419226325255965,0,0.44449345560323,0.412070114477788,1.28367683836726,0.252697211763798,0.25347929989024,0.377252682772152,0.749132059759059,0.192075457214608,0.34461281373368,0.476293691283074,0.347652977834566,0.578727661391115,0.412085900803307,0.441596760403192,1.37147700954166,0.532427418478012,0.238436189947321,0.581385666529314,0.188218760830661,0.338458431566706,0.365855945745545,0.789209134313529,0.679020569229309,0,0.830445126869219,0.492522411877817,1.22769312950907,0.154936841185966,0,0.499621155875892,0.233931608445408,0.429742108096597,0,0,0.463735671240843
|short_description=p4@Sox4
}}

Revision as of 00:18, 13 September 2013

Short description:p4@Sox4
Species:Mouse (Mus musculus)
DPI dataset: NA
TSS-like-by-RIKEN-classifier(Yes/No): NA
DHS support(Yes/No): NA
Description: CAGE_peak_4_at_Sox4_5end
Coexpression cluster:MCL_coexpression_mm9:100
Association with transcript: 0bp_to_ENSMUST00000110326, ENSMUST00000168068_5end
EntrezGene:Sox4
Link to Zenbu:ZENBU


View on UCSC genome browser

Mouse over to see Genome browser image, Click image to go to Genome browser


CAGE Expression

Sample

p4@Sox4

Atoh1+ Inner ear hair cells - organ of corti, pool1.CNhs12533.12158-128G70.64
CD326+ enterocyte isolated from mice, treated with RANKL, day03, pool1.CNhs13242.11850-124I50.00
CD326+ enterocyte isolated from mice, treated with RANKL, day03, pool2.CNhs13233.11851-124I60.45
CD326+ enterocyte, pool1.CNhs13542.11848-124I30.00
CD326+ enterocyte, pool2.CNhs13197.11849-124I40.00
CD326++ enterocyte isolated from mice, treated with RANKL, day03, pool1.CNhs13236.11852-124I70.67
CD326++ enterocyte isolated from mice, treated with RANKL, day03, pool2.CNhs13210.11853-124I80.70
CD4+CD25+ regulatory T cells, pool2 (Balb_cAJcl).CNhs13221.11818-124E90.52
CD4+CD25-CD44- naive conventional T cells, PMA and ionomycin stimulation, 02hr, pool1 (C57BL_6J).CNhs13219.11816-124E72.82
CD4+CD25-CD44- naive conventional T cells, PMA and ionomycin stimulation, 02hr, pool2 (Balb_cAJcl).CNhs13226.11820-124F24.21
CD4+CD25-CD44- naive conventional T cells, antiCD3_CD28 stimulation, 06hr, pool1 (C57BL_6J).CNhs13218.11815-124E65.82
CD4+CD25-CD44- naive conventional T cells, antiCD3_CD28 stimulation, 06hr, pool2 (Balb_cAJcl).CNhs13225.11819-124F15.82
CD4+CD25-CD44- naive conventional T cells, pool1 (C57BL_6J).CNhs13217.11813-124E40.17
CD4+CD25-CD44- naive conventional T cells, pool2 (Balb_cAJcl).CNhs13220.11817-124E80.52
CD41+ megakaryocyte cancer, donor1.CNhs13079.11774-124A10.00
CD41+ megakaryocyte cancer, donor2.CNhs13213.11776-124A30.00
CD41+ megakaryocyte cancer, donor3.CNhs13506.11778-124A50.00
CD41+ megakaryocyte control, donor1.CNhs13212.11775-124A20.16
CD41+ megakaryocyte control, donor2.CNhs13214.11777-124A40.00
CD41+ megakaryocyte control, donor3.CNhs13201.11779-124A60.00
Clontech Mouse Universal Reference Total RNA, pool1.CNhs10609.10001-101A30.26
EBF KO HPCs induced to T cell, 00hr00min, biol_rep1.CNhs11058.12972-138H20.40
EBF KO HPCs induced to T cell, 00hr00min, biol_rep2.CNhs12980.12988-138I90.78
Follicle Associated Epithelium, pool2.CNhs13211.10262-104D10.32
Follicle Associated Epithelium, pool3.CNhs13200.10263-104D20.00
GP2+ M cell, pool1.CNhs13228.11845-124H90.00
GP2+ M cell, pool2.CNhs13231.11846-124I10.00
GP2+ M cell, pool3.CNhs13240.11847-124I20.43
Ileum epithelium, pool1.CNhs13199.10252-104B90.00
Ileum epithelium, pool2.CNhs13232.10253-104C10.00
Ileum epithelium, treated with RANKL, day03, pool3.CNhs13234.10260-104C80.22
J2E erythroblastic leukemia response to erythropoietin, 00hr00min, biol_rep1.CNhs12449.13063-139I30.00
J2E erythroblastic leukemia response to erythropoietin, 00hr00min, biol_rep2.CNhs12668.13129-140G60.00
J2E erythroblastic leukemia response to erythropoietin, 00hr00min, biol_rep3.CNhs12770.13195-141E90.00
Lgr5 positive intestinal stem cells, pool1.CNhs12555.12228-129F50.00
Lgr5 positive intestinal stem cells, pool2.CNhs12556.12229-129F60.00
Lgr5 positive intestinal stem cells, pool3.CNhs12557.12230-129F70.41
MC1+Gr1+ myeloid-derived suppressor cells cancer, donor1 (10,11,12 3LL).CNhs12539.12159-128G80.00
MC1+Gr1+ myeloid-derived suppressor cells cancer, donor2 (0127 3LL).CNhs12198.12161-128H10.00
MC1+Gr1+ myeloid-derived suppressor cells cancer, donor3 (0128 3LL).CNhs12542.12163-128H30.00
MC1+Gr1+ myeloid-derived suppressor cells control, donor1 (4,5,6PBS).CNhs12540.12160-128G90.00
MC1+Gr1+ myeloid-derived suppressor cells control, donor2 (0127 PBS).CNhs12541.12162-128H20.00
MC1+Gr1+ myeloid-derived suppressor cells control, donor3 (0128 PBS).CNhs12543.12164-128H40.00
Mouse Aortic Smooth Muscle cells - differentiated, biol_rep1.CNhs11055.11484-119D81.13
Mouse Aortic Smooth Muscle cells - differentiated, biol_rep2.CNhs11056.11485-119D91.42
Mouse Aortic Smooth Muscle cells, donor1.CNhs11297.11299-117B32.20
Mouse Astrocytes - cerebellar, donor1.CNhs13077.11708-123B70.00
Mouse Astrocytes - cerebellar, donor2.CNhs12076.11550-120C20.65
Mouse Astrocytes - hippocampus, donor1.CNhs12129.11709-123B80.44
Mouse Astrocytes - hippocampus, donor2.CNhs12077.11551-120C30.39
Mouse Astrocytes, donor2.CNhs12078.11552-120C40.42
Mouse Astrocytes, donor3.CNhs12107.11633-122C40.00
Mouse CD19+ B Cells, donor1.CNhs13531.11856-125A20.00
Mouse CD4+ T Cells, donor1.CNhs13509.11854-124I90.00
Mouse CD8+ T Cells, donor1.CNhs13511.11855-125A10.34
Mouse Cardiac Myocytes, donor1.CNhs12355.11711-123C10.77
Mouse Cardiac Myocytes, donor2.CNhs12356.11729-123E10.00
Mouse Cardiac Myocytes, donor3.CNhs12353.11634-122C50.00
Mouse Granule cells, donor1.CNhs12131.11713-123C33.84
Mouse Granule cells, donor2.CNhs12357.11731-123E32.64
Mouse Granule cells, donor3.CNhs12108.11636-122C75.07
Mouse Meningeal cells, donor1.CNhs12132.11716-123C60.34
Mouse Meningeal cells, donor3.CNhs12109.11639-122D10.00
Mouse Mesenchymal stem cells - bone marrow derived, donor1.CNhs12628.11717-123C70.45
Mouse Mesenchymal stem cells - bone marrow derived, donor2.CNhs12633.11735-123E70.00
Mouse Mesenchymal stem cells - bone marrow derived, donor3.CNhs12616.11640-122D20.00
Mouse Microglia, donor1.CNhs12629.11718-123C80.90
Mouse Microglia, donor2.CNhs12634.11736-123E80.77
Mouse Neurons - cortical, donor1.CNhs12025.11724-123D54.56
Mouse Neurons - cortical, donor2.CNhs11947.11742-123F510.40
Mouse Neurons - cortical, donor3.CNhs12112.11647-122D95.47
Mouse Neurons - dorsal spinal cord, donor2.CNhs12635.11738-123F11.43
Mouse Neurons - dorsal spinal cord, donor3.CNhs12618.11643-122D52.43
Mouse Neurons - hippocampal, donor1.CNhs12133.11721-123D23.67
Mouse Neurons - hippocampal, donor2.CNhs12359.11739-123F23.26
Mouse Neurons - hippocampal, donor3.CNhs12110.11644-122D64.60
Mouse Neurons - raphe, donor1.CNhs12631.11722-123D30.00
Mouse Neurons - raphe, donor2.CNhs12636.11740-123F30.00
Mouse Neurons - raphe, donor3.CNhs12619.11645-122D70.77
Mouse Neurons - striatal, donor1.CNhs12134.11723-123D43.03
Mouse Neurons - striatal, donor2.CNhs12360.11741-123F43.11
Mouse Neurons - striatal, donor3.CNhs12111.11646-122D82.08
Mouse Neurons - substantia nigra, donor4, tech_rep1.CNhs12612.11489-119E40.56
Mouse Neurons - substantia nigra, donor5.CNhs12614.11490-119E50.56
Mouse Neurons - substantia nigra, donor6.CNhs12643.11770-123I60.46
Mouse Neurons - ventral spinal cord, donor1.CNhs12632.11725-123D61.77
Mouse Neurons - ventral spinal cord, donor2.CNhs12638.11743-123F61.42
Mouse Neurons - ventral spinal cord, donor3.CNhs12113.11648-122E12.80
Mouse Schwann, donor1.CNhs12507.11728-123D91.67
Mouse Schwann, donor2.CNhs12573.11746-123F90.83
Mouse hepatic Sinusoidal Endothelial Cells, donor1.CNhs13209.11830-124G31.16
Mouse hepatic Stellate Cells (lipocyte), donor1.CNhs13196.11825-124F70.00
Mouse hepatocyte, donor1.CNhs13078.11714-123C40.00
Mouse hepatocyte, donor3.CNhs12615.11637-122C80.00
Mouse hepatocyte, donor6.CNhs13090.11822-124F40.00
Mouse hepatocyte, donor8.CNhs13091.11824-124F60.00
SABiosciences XpressRef Mouse Universal Total RNA, pool1.CNhs10611.10003-101A70.28
ST2 (Mesenchymal stem cells) cells, medium change (without induction), 00hr, biol_rep1 (000hC4).CNhs11939.12338-130I70.68
ST2 (Mesenchymal stem cells) cells, medium change (without induction), 00hr, biol_rep2 (000hC5).CNhs13275.12460-132E30.78
ST2 (Mesenchymal stem cells) cells, medium change (without induction), 00hr, biol_rep3 (000hC6).CNhs13324.12582-133I80.35
Sox2+ Supporting cells - organ of corti, pool1.CNhs12532.12157-128G60.85
TSt-4/DLL1 feeder cells, biol_rep1.CNhs13407.12971-138H10.00
TSt-4/DLL1 feeder cells, biol_rep2.CNhs13408.12987-138I80.00
TSt-4/DLL1 feeder cells, biol_rep3.CNhs13409.13003-139B60.00
Tracheal epithelial cells, differentiation to ciliated epithelial cells, 000hr, biol_rep1.CNhs13739.13367-143G11.30
Tracheal epithelial cells, differentiation to ciliated epithelial cells, 000hr, biol_rep2.CNhs13740.13368-143G21.27
Tracheal epithelial cells, differentiation to ciliated epithelial cells, 000hr, biol_rep3.CNhs13741.13369-143G32.02
Universal RNA - Mouse Normal Tissues Biochain, pool1.CNhs10613.10008-101B60.23
accessory axillary lymph node, adult.CNhs10475.1063-29H90.00
adrenal gland, adult.CNhs10508.49-24D70.00
adrenal gland, embryo E14.CNhs11038.406-44C50.35
adrenal gland, embryo E16.CNhs11004.1254-43D60.30
adrenal gland, embryo E17.CNhs11043.1263-45I10.00
adrenal gland, embryo E18.CNhs11026.1262-18F50.00
adrenal gland, neonate N00.CNhs11191.1311-23C10.00
adrenal gland, neonate N25.CNhs11223.1377-27I30.38
amnion, adult pregnant day17.5.CNhs10488.583-22A80.25
aorta, adult.CNhs10498.46-23H10.00
bone (os femoris), adult.CNhs10483.56-12G20.00
bone (os femoris), neonate N02.CNhs11227.1985-43F50.32
bone (os femoris), neonate N16.CNhs11225.1525-43A60.00
bone (os femoris), neonate N20.CNhs11195.1350-25C30.00
cecum, adult.CNhs10467.37-13H40.00
cerebellum, adult.CNhs10494.15-8B20.00
cerebellum, neonate N30.CNhs11135.1395-42I20.21
colon, adult.CNhs10468.36-18H70.00
common myeloid progenitor CMP, biol_rep1.CNhs12550.12122-128C70.84
common myeloid progenitor CMP, biol_rep2.CNhs12203.12125-128D10.60
common myeloid progenitor CMP, biol_rep3.CNhs12551.12128-128D40.51
corpora quadrigemina, adult.CNhs10501.16-22A40.30
corpus striatum, adult.CNhs10487.19-21D80.00
corpus striatum, neonate N00.CNhs11226.630-43F11.01
cortex, adult.CNhs10473.12-14D50.35
cortex, neonate N30.CNhs11107.1392-42F21.79
diencephalon, adult.CNhs10482.20-12F20.21
diencephalon, neonate N30.CNhs11201.1388-42B20.16
epididymis and seminiferous tubule, neonate N00.CNhs11218.1310-23B10.31
epididymis and seminiferous tubule, neonate N30.CNhs11199.1387-42A20.25
epididymis, adult.CNhs10490.58-23B21.01
eyeball, adult.CNhs10484.31-12G40.21
eyeball, embryo E12.CNhs11016.345-16C60.13
eyeball, embryo E14.CNhs10521.399-16E20.46
eyeball, embryo E15.CNhs10593.426-16C90.36
eyeball, embryo E17.CNhs11023.1261-18D40.15
eyeball, neonate N00.CNhs11207.633-15C61.09
eyeball, neonate N01.CNhs11140.1532-43E71.28
eyeball, neonate N02.CNhs11205.1551-44G80.75
eyeball, neonate N16.CNhs11188.777-19A20.26
forelimb, embryo E11.CNhs10596.335-25E20.43
forelimb, embryo E12.CNhs10600.359-14H20.38
forelimb, embryo E13.CNhs10589.384-1E20.70
forelimb, embryo E14.CNhs10577.413-26A80.22
forelimb, embryo E15.CNhs11007.437-20E70.00
forelimb, embryo E17.CNhs10598.1517-43C40.00
forelimb, embryo E18.CNhs11008.1520-43B50.00
gonad, embryo E13.CNhs11044.1564-45I60.40
granulocyte macrophage progenitor GMP, biol_rep1.CNhs12206.12123-128C80.00
granulocyte macrophage progenitor GMP, biol_rep2.CNhs12202.12126-128D20.00
granulocyte macrophage progenitor GMP, biol_rep3.CNhs11928.12129-128D50.00
heart, embryo E11.CNhs10586.331-24E90.62
heart, embryo E12.CNhs11015.353-12F50.70
heart, embryo E13.CNhs11013.376-3I90.18
heart, embryo E14.CNhs10597.403-26D40.47
heart, embryo E15.CNhs11017.431-16C80.39
heart, embryo E16.CNhs11021.457-17C60.31
heart, embryo E17.CNhs11025.479-18E50.23
heart, embryo E18.CNhs11030.1283-20G30.80
heart, neonate N00.CNhs11213.639-21E30.35
heart, neonate N03.CNhs11221.1349-25I20.33
heart, neonate N10.CNhs11118.749-24G10.00
heart, neonate N16.CNhs11209.782-15G10.16
heart, neonate N20.CNhs11127.821-26I60.29
heart, neonate N25.CNhs11196.1351-25D30.44
heart, neonate N30.CNhs11202.1390-42D20.00
hippocampus, adult.CNhs10478.13-16E80.21
hippocampus, neonate N00.CNhs11228.627-43G11.54
intestinal mucosa, adult.CNhs10506.860-29I30.00
intestine, adult.CNhs10496.178-9A30.00
intestine, embryo E12.CNhs11019.1251-16I50.21
intestine, embryo E13.CNhs11010.381-16D50.00
intestine, embryo E15.CNhs10602.976-16D80.00
intestine, embryo E16.CNhs10585.463-22H40.81
intestine, embryo E17.CNhs10582.482-18D30.67
intestine, embryo E18.CNhs10526.1289-20F70.38
intestine, neonate N00.CNhs11126.644-26D10.00
intestine, neonate N01.CNhs11192.1322-23E90.00
intestine, neonate N06.CNhs11102.688-20B80.00
intestine, neonate N07.CNhs11095.720-20F20.00
intestine, neonate N10.CNhs11098.755-23A50.19
intestine, neonate N20.CNhs11187.827-18D10.90
intestine, neonate N25.CNhs11121.1352-25E30.00
intestine, neonate N30.CNhs11131.1384-42G10.00
kidney, embryo E14.CNhs10606.411-4I90.57
kidney, embryo E15.CNhs10997.434-16F80.46
kidney, embryo E16.CNhs10584.464-22A50.00
kidney, embryo E17.CNhs11028.483-18I20.20
kidney, embryo E18.CNhs11001.1288-20C70.00
kidney, neonate N00.CNhs11214.646-21G70.56
kidney, neonate N10.CNhs11206.758-6D50.76
kidney, neonate N20.CNhs11113.832-19I10.44
kidney, neonate N25.CNhs11122.1353-25F30.00
kidney, neonate N30.CNhs11203.1385-42H10.12
liver, adult pregnant day01.CNhs10466.508-5B20.00
liver, embryo E12.CNhs10601.355-15F80.00
liver, embryo E13.CNhs10524.378-3H60.20
liver, embryo E14.CNhs10594.409-16E10.00
liver, embryo E15.CNhs10520.433-16D70.00
liver, embryo E16.CNhs10523.462-17F50.24
liver, embryo E17.CNhs10510.481-18A30.00
liver, embryo E18.CNhs10579.499-43G40.00
liver, neonate N00.CNhs11117.641-24F40.00
liver, neonate N03.CNhs11123.1345-25G20.00
liver, neonate N06.CNhs11101.684-20A81.44
liver, neonate N07.CNhs11103.716-20H20.00
liver, neonate N10.CNhs11115.751-24B90.00
liver, neonate N20.CNhs11220.823-25A30.00
liver, neonate N25.CNhs11198.1368-26H10.00
liver, neonate N30.CNhs11106.1382-42D10.00
lung, adult.CNhs10474.28-22B10.18
lung, embryo E12.CNhs10522.354-16G20.19
lung, embryo E14.CNhs10604.404-26F80.16
lung, embryo E15.CNhs11020.432-17C50.51
lung, embryo E16.CNhs10998.458-17B60.47
lung, embryo E17.CNhs10605.480-44A60.50
lung, embryo E18.CNhs10583.1287-20I60.00
lung, neonate N00.CNhs11224.640-42C60.59
lung, neonate N06.CNhs11212.683-20E50.32
lung, neonate N07.CNhs11111.715-19A30.89
lung, neonate N10.CNhs11219.750-23E60.16
lung, neonate N20.CNhs11109.822-18A40.33
lung, neonate N25.CNhs11119.1359-25C70.17
lung, neonate N30.CNhs11133.1394-42H20.43
macrophage, bone marrow derived, pool1.CNhs11457.3560-170A10.00
macrophage, bone marrow derived, pool2.CNhs11532.3632-171A10.00
mammary gland, adult lactating day02.CNhs10480.595-22B60.49
mammary gland, adult pregnant day19.CNhs10476.588-5H20.00
medulla oblongata, adult.CNhs10477.17-12C20.00
medulla oblongata, neonate N30.CNhs11200.1396-42A30.35
mouse fibroblast cell line: CRL-1658 NIH/3T3.CNhs11093.1830-49C70.33
muscle (biceps femoris), neonate N30.CNhs11129.1389-42C20.00
neurospheres - enteric neuron derived, biol_rep1.CNhs13087.11810-124E10.63
neurospheres - enteric neuron derived, biol_rep2.CNhs13088.11811-124E20.78
neurospheres - enteric neuron derived, biol_rep3.CNhs13089.11812-124E31.94
neurospheres - parasympathetic neuron derived, biol_rep1.CNhs13084.11807-124D70.96
neurospheres - parasympathetic neuron derived, biol_rep2.CNhs13085.11808-124D80.89
neurospheres - parasympathetic neuron derived, biol_rep3.CNhs13086.11809-124D90.85
neurospheres - sympathetic neuron derived, biol_rep1.CNhs13081.11804-124D40.40
neurospheres - sympathetic neuron derived, biol_rep2.CNhs13082.11805-124D50.29
neurospheres - sympathetic neuron derived, biol_rep3.CNhs13083.11806-124D61.58
olfactory brain, adult.CNhs10489.18-22I91.61
ovary, adult.CNhs10507.91-2I70.14
ovary, embryo E18.CNhs11040.505-44H70.36
ovary, neonate N00.CNhs11217.1299-22I40.49
oviduct, adult pregnant day01.CNhs10500.988-6G60.33
pancreas, adult.CNhs10486.34-16E40.00
pancreas, embryo E14.CNhs11012.405-44F40.00
pancreas, embryo E15.CNhs11042.1556-45F20.60
pancreas, embryo E16.CNhs11003.460-26E50.19
pancreas, embryo E17.CNhs10599.1558-45G30.00
pancreas, embryo E18.CNhs10580.1535-43I70.31
pancreas, neonate N00.CNhs11105.645-26G90.00
pancreas, neonate N01.CNhs11138.1531-43D70.00
pancreas, neonate N02.CNhs11139.1539-43D81.43
pancreas, neonate N16.CNhs11136.787-43B60.00
pancreas, neonate N25.CNhs11094.1555-45E21.05
pancreas, neonate N30.CNhs11182.1548-44H50.00
pituitary gland, adult.CNhs10493.21-1G80.00
pituitary gland, embryo E12.CNhs11018.346-16E60.18
pituitary gland, embryo E13.CNhs11009.370-44C70.39
pituitary gland, embryo E14.CNhs11037.398-44A50.64
pituitary gland, embryo E15.CNhs10592.427-16B90.18
pituitary gland, embryo E16.CNhs11036.449-43F60.54
pituitary gland, embryo E17.CNhs11039.1265-44F50.00
pituitary gland, neonate N00.CNhs11190.1308-22E90.61
placenta, adult pregnant day10.CNhs10472.539-13I70.23
placenta, adult pregnant day17.CNhs10464.577-18G30.00
prostate, adult.CNhs10470.859-1F80.22
skin, adult.CNhs10492.30-1C30.16
skin, neonate N00.CNhs11124.650-25G41.13
skin, neonate N03.CNhs11215.662-22H30.66
skin, neonate N06.CNhs11097.693-20I50.60
skin, neonate N10.CNhs11108.762-6C40.98
small intestine, neonate N16.CNhs11114.790-21I10.58
spinal cord, adult.CNhs10505.24-13C90.56
spleen, adult.CNhs10465.25-2G20.00
spleen, embryo E16.CNhs11035.461-43C10.21
spleen, embryo E18.CNhs11011.1271-21F20.19
spleen, neonate N10.CNhs11116.752-24D10.00
spleen, neonate N20.CNhs11112.824-19H10.14
spleen, neonate N25.CNhs11099.1354-25G30.23
stem cell (cKit+ Sca1- lineage-) KSL, biol_rep1.CNhs12534.12121-128C60.51
stem cell (cKit+ Sca1- lineage-) KSL, biol_rep2.CNhs12535.12124-128C90.70
stem cell (cKit+ Sca1- lineage-) KSL, biol_rep3.CNhs12536.12127-128D30.69
stomach, adult.CNhs10503.33-1H60.00
stomach, embryo E12.CNhs10588.356-43E30.00
stomach, embryo E15.CNhs10603.1252-16G80.81
stomach, embryo E16.CNhs11022.459-17D40.22
stomach, embryo E17.CNhs11006.1035-18D50.21
stomach, embryo E18.CNhs10999.1286-20C60.87
stomach, neonate N03.CNhs11193.1340-24B80.27
stomach, neonate N07.CNhs11210.718-18A90.50
stomach, neonate N25.CNhs11104.1355-25E40.26
stomach, neonate N30.CNhs11134.1386-42I10.13
submandibular gland, adult.CNhs10469.59-29C10.00
testis, adult.CNhs10504.57-7G50.00
testis, embryo E13.CNhs11031.389-23F50.75
testis, embryo E15.CNhs11034.443-27C50.66
testis, embryo E16.CNhs11033.470-26G50.58
testis, embryo E17.CNhs11029.486-18I50.52
testis, embryo E18.CNhs11027.503-18G50.00
testis, neonate N00.CNhs11189.1300-22B70.59
testis, neonate N07.CNhs11222.726-26I40.52
testis, neonate N10.CNhs11204.763-44D90.63
testis, neonate N20.CNhs11110.839-18H30.48
testis, neonate N30.CNhs11130.1391-42E20.00
thymus, adult.CNhs10471.38-12B50.32
thymus, embryo E14.CNhs11041.402-44I40.41
thymus, embryo E15.CNhs11005.430-45I20.92
thymus, embryo E16.CNhs11002.456-26C50.52
thymus, embryo E17.CNhs10581.478-18C10.36
thymus, embryo E18.CNhs10595.1273-19G40.20
thymus, neonate N02.CNhs11181.1541-43F80.72
thymus, neonate N03.CNhs11137.2104-43C70.59
thymus, neonate N06.CNhs11197.681-26C40.40
thymus, neonate N07.CNhs11211.713-19D30.76
thymus, neonate N10.CNhs11194.748-24E40.30
thymus, neonate N20.CNhs11186.820-7A20.78
thymus, neonate N25.CNhs11125.1362-25G70.96
thymus, neonate N30.CNhs11132.1393-42G20.58
tongue, adult.CNhs10499.32-1B40.00
trophoblast stem cell line B1 differentiation, day00, biol_rep1.CNhs13526.13297-142H30.44
trophoblast stem cell line R1AB differentiation, day00, biol_rep1.CNhs13481.13283-142F70.09
trophoblast stem cell line Rybp differentiation, day00, biol_rep1.CNhs13519.13290-142G50.00
urinary bladder, adult.CNhs10481.879-12E40.00
uterus, adult pregnant day19.CNhs10497.590-15F50.00
uterus, adult.CNhs10509.92-27E50.18
vagina, adult.CNhs10502.89-27D50.43
vesicular gland, adult.CNhs10491.51-27F80.00
visual cortex - wildtype, neonate N15, donor1.CNhs13031.10235-104A10.56
visual cortex - wildtype, neonate N15, donor2.CNhs13032.10236-104A21.84
visual cortex - wildtype, neonate N15, donor3.CNhs13033.10237-104A30.57
visual cortex - wildtype, neonate N15, donor5.CNhs13820.10349-105D70.69
visual cortex - wildtype, neonate N30, donor1.CNhs13034.10238-104A42.06
visual cortex - wildtype, neonate N30, donor2.CNhs13035.10239-104A50.00
visual cortex - wildtype, neonate N30, donor3.CNhs13036.10240-104A61.35
visual cortex - wildtype, neonate N60-70, donor1.CNhs13037.10241-104A71.80
visual cortex - wildtype, neonate N60-70, donor2.CNhs13038.10242-104A82.72
visual cortex - wildtype, neonate N60-70, donor3.CNhs13039.10243-104A90.00
whole body, embryo E11.CNhs11014.324-5I80.62
whole body, embryo E12.CNhs10587.857-27C90.40
whole body, embryo E13.CNhs10512.372-23H20.34
whole body, embryo E14.5.CNhs10578.420-27D20.24
whole body, embryo E14.CNhs10519.395-14B10.42
whole body, embryo E16.CNhs10514.453-14F20.00
whole body, embryo E17.5, pool1 (internal control).CNhs10479.3139-67G50.44
whole body, embryo E17.5, pool1 (internal control).CNhs10495.3139-67G50.41
whole body, embryo E17.5, pool1 (internal control).CNhs10511.3139-67G51.28
whole body, embryo E17.5, pool1 (internal control).CNhs10527.3139-67G50.25
whole body, embryo E17.5, pool1 (internal control).CNhs10591.3139-67G50.25
whole body, embryo E17.5, pool1 (internal control).CNhs10607.3139-67G50.38
whole body, embryo E17.5, pool1 (internal control).CNhs10623.3139-67G50.75
whole body, embryo E17.5, pool1 (internal control).CNhs10639.3139-67G50.19
whole body, embryo E17.5, pool1 (internal control).CNhs10655.3139-67G50.34
whole body, embryo E17.5, pool1 (internal control).CNhs10725.3139-67G50.48
whole body, embryo E17.5, pool1 (internal control).CNhs10749.3139-67G50.35
whole body, embryo E17.5, pool1 (internal control).CNhs10840.3139-67G50.58
whole body, embryo E17.5, pool1 (internal control).CNhs10856.3139-67G50.41
whole body, embryo E17.5, pool1 (internal control).CNhs10880.3139-67G50.44
whole body, embryo E17.5, pool1 (internal control).CNhs11000.3139-67G51.37
whole body, embryo E17.5, pool1 (internal control).CNhs11024.3139-67G50.53
whole body, embryo E17.5, pool1 (internal control).CNhs11032.3139-67G50.24
whole body, embryo E17.5, pool1 (internal control).CNhs11048.3139-67G50.58
whole body, embryo E17.5, pool1 (internal control).CNhs11072.3139-67G50.19
whole body, embryo E17.5, pool1 (internal control).CNhs11080.3139-67G50.34
whole body, embryo E17.5, pool1 (internal control).CNhs11096.3139-67G50.37
whole body, embryo E17.5, pool1 (internal control).CNhs11120.3139-67G50.79
whole body, embryo E17.5, pool1 (internal control).CNhs11128.3139-67G50.68
whole body, embryo E17.5, pool1 (internal control).CNhs11184.3139-67G50.00
whole body, embryo E17.5, pool1 (internal control).CNhs11208.3139-67G50.83
whole body, embryo E17.5, pool1 (internal control).CNhs11216.3139-67G50.49
whole body, embryo E17.5, pool1 (internal control).CNhs11246.3139-67G51.23
whole body, embryo E17.5, pool1 (internal control).CNhs11278.3139-67G50.15
whole body, embryo E17.5.CNhs10513.490-9F90.00
whole body, embryo E17.CNhs10517.475-3I50.50
whole body, embryo E18.CNhs10516.493-3B30.23
whole body, neonate N00.CNhs10525.657-19C20.43
whole body, neonate N01.CNhs10576.659-23C60.00
whole body, neonate N06.CNhs10515.692-21D10.00
whole body, neonate N10.CNhs10518.761-6B40.46





  • Click each plot point to find sample in table


Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data

Uber anatomy
Ontology termp-valuen
gray matter1.71e-2034
brain grey matter6.98e-1429
regional part of telencephalon6.98e-1429
telencephalon6.98e-1429
nervous system1.20e-1375
central nervous system5.44e-1373
ectoderm-derived structure6.31e-1295
ectoderm6.31e-1295
presumptive ectoderm6.31e-1295
neural tube1.87e-1152
neural rod1.87e-1152
future spinal cord1.87e-1152
neural keel1.87e-1152
neurectoderm2.18e-1164
neural plate2.18e-1164
presumptive neural plate2.18e-1164
cerebral cortex2.20e-1121
cerebral hemisphere2.20e-1121
pallium2.20e-1121
regional part of nervous system7.90e-1154
ecto-epithelium3.69e-1073
regional part of spinal cord2.82e-095
gray matter of spinal cord2.82e-095
regional part of forebrain2.88e-0939
forebrain2.88e-0939
future forebrain2.88e-0939
anterior neural tube6.19e-0940
pre-chordal neural plate1.80e-0849
brain4.52e-0847
future brain4.52e-0847
regional part of cerebral cortex9.64e-0817
spinal cord1.18e-076
dorsal region element1.18e-076
dorsum1.18e-076
regional part of brain2.92e-0746







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