FFCP PHASE1:Hg19::chr4:57522513..57522548,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=84525|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=24961|TSSclassifier=S|UniProt=Q9BPY8|association_with_transcript=124bp_to_ENST00000381255_5end|description=CAGE_peak_4_at_HOPX_5end|id=chr4:57522513..57522548,-|ontology_enrichment_celltype=CL:0000838!2.17e-11!52;CL:0000542!6.54e-11!53;CL:0000051!6.54e-11!53;CL:0000791!2.22e-09!18;CL:0000789!2.22e-09!18;CL:0002420!2.22e-09!18;CL:0002419!2.22e-09!18;CL:0000790!2.22e-09!18;CL:0000625!2.99e-09!11;CL:0000236!2.96e-08!14;CL:0000084!2.74e-07!25;CL:0000827!2.74e-07!25|ontology_enrichment_celltype_v019=CL:0000625;4.56e-13;11!CL:0000236;9.27e-12;13!CL:0000542;8.72e-10;53!CL:0000791;4.30e-09;18!CL:0000789;4.30e-09;18!CL:0002419;4.30e-09;18!CL:0000084;4.54e-08;25|ontology_enrichment_celltype_v019_2=CL:0000838,6.76e-15,52;CL:0000542,2.01e-14,53;CL:0000051,2.01e-14,53;CL:0000625,4.13e-13,11;CL:0000236,2.68e-12,14;CL:0000791,4.14e-09,18;CL:0000789,4.14e-09,18;CL:0002420,4.14e-09,18;CL:0002419,4.14e-09,18;CL:0000790,4.14e-09,18;CL:0000988,2.16e-08,177;CL:0000084,4.45e-08,25;CL:0000827,4.45e-08,25;CL:0000037,2.58e-07,168;CL:0000738,3.97e-07,136;CL:0002087,5.57e-07,115|ontology_enrichment_development_v019=CL:0000051;8.72e-10;53!CL:0000790;4.30e-09;18|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007023!6.88e-35!115;UBERON:0001049!6.29e-17!57;UBERON:0005068!6.29e-17!57;UBERON:0006241!6.29e-17!57;UBERON:0007135!6.29e-17!57;UBERON:0003075!9.88e-15!86;UBERON:0007284!9.88e-15!86;UBERON:0001017!5.78e-14!82;UBERON:0001893!1.20e-13!34;UBERON:0002780!1.73e-13!41;UBERON:0001890!1.73e-13!41;UBERON:0006240!1.73e-13!41;UBERON:0002020!2.24e-13!34;UBERON:0003528!2.24e-13!34;UBERON:0001869!2.27e-13!32;UBERON:0002346!3.83e-13!90;UBERON:0002791!5.31e-13!33;UBERON:0005743!5.42e-13!86;UBERON:0002616!5.67e-13!59;UBERON:0003080!7.41e-13!42;UBERON:0000178!1.82e-11!15;UBERON:0000179!1.82e-11!15;UBERON:0000463!1.82e-11!15;UBERON:0003056!1.82e-11!61;UBERON:0000073!1.01e-10!94;UBERON:0001016!1.01e-10!94;UBERON:0000955!1.11e-10!69;UBERON:0006238!1.11e-10!69;UBERON:0000956!1.23e-10!25;UBERON:0000203!1.23e-10!25;UBERON:0000153!5.04e-09!129;UBERON:0007811!5.04e-09!129;UBERON:0002619!6.35e-09!22;UBERON:0001950!4.17e-08!20;UBERON:0000033!1.20e-07!123|ontology_enrichment_uberon_v019=UBERON:0000178;3.42e-16;15!UBERON:0000179;3.42e-16;15!UBERON:0000463;3.42e-16;15!UBERON:0002390;1.25e-12;32!UBERON:0001869;3.25e-10;32!UBERON:0000956;9.00e-10;25!UBERON:0000203;9.00e-10;25!UBERON:0002791;2.11e-09;32!UBERON:0001893;2.31e-09;34!UBERON:0003528;9.99e-09;34!UBERON:0002020;9.99e-09;34!UBERON:0002619;1.74e-07;22!UBERON:0002193;2.68e-07;42!UBERON:0001950;3.07e-07;20|ontology_enrichment_uberon_v019_2=UBERON:0007023,2.63e-25,114;UBERON:0000178,1.94e-16,15;UBERON:0000179,1.94e-16,15;UBERON:0000463,1.94e-16,15;UBERON:0001017,5.82e-11,81;UBERON:0001869,7.11e-11,32;UBERON:0001049,1.89e-10,56;UBERON:0005068,1.89e-10,56;UBERON:0006241,1.89e-10,56;UBERON:0007135,1.89e-10,56;UBERON:0001893,6.81e-10,34;UBERON:0000073,1.07e-09,53;UBERON:0002616,1.07e-09,53;UBERON:0000956,1.20e-09,25;UBERON:0000203,1.20e-09,25;UBERON:0003528,1.27e-09,34;UBERON:0002020,1.27e-09,34;UBERON:0002791,1.39e-09,32;UBERON:0001016,7.93e-09,89;UBERON:0002780,9.93e-09,41;UBERON:0001890,9.93e-09,41;UBERON:0003080,9.93e-09,41;UBERON:0006240,9.93e-09,41;UBERON:0002619,2.00e-07,22;UBERON:0000955,3.40e-07,68;UBERON:0006238,3.40e-07,68;UBERON:0001950,3.66e-07,20|phase1_expression=0,0,0.140954404095971,1.0007329835313,0.446961094427288,0,0,0,0,0.245733936501509,0,0,0,0.990130823680373,1.65698687863958,0,0,0,0,0.246242116153576,0.408001382488506,0.313454721478088,7.44213566540748,3.01123735160345,3.01302335027527,0,0,0,9.8341069212226,3.45446458287491,4.64448369948228,1.83884244895785,0,0,0,0,9.9824149373848,3.87796785972314,1.20326668482085,3.03815219002193,0,1.94336199611388,0.515151135268373,0,0,0,0,0,0,0,0,0.236482229888585,0,0,0,0,0.272906150057846,0,0.306083892370903,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.422510572623884,0,0,0,0,0,0,0,0,14.0796995569058,21.2994058392231,22.2377313465889,8.53460445133014,11.2110876370083,25.2891073579973,28.4249295297491,20.989182599778,2.84606484554724,11.1575065980478,5.73409842187843,38.3296852879175,19.6177997043538,6.847986204152,0.786839080455332,0.786021525498329,1.23360899399706,0,0,0,0,6.57321695622524,0.589211814949674,0.886135578334485,0.270803863765016,0.896639238079726,3.25148368899696,0.822189523018381,1.93445012450094,1.44901542867526,0.14828656316206,0,0,12.5773370394298,1.53288197440768,1.71813722741315,0.759059076058509,4.45991580053735,7.1619179924206,5.70271226669025,10.5402583354441,12.2867146708242,2.49861453104692,5.20909954496837,10.6746639599736,8.26587647221403,5.88368430723716,3.91025890483557,0,0,0.12786256184353,0.722878304769133,0,0.144846518960824,0,0,0.189069634328136,0.221729397462564,0.175669571386252,2.42311289670768,1.82147644146271,0.74156888556885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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=84525 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24961 | |||
|TSSclassifier=S | |||
|UniProt=Q9BPY8 | |||
|association_with_transcript=124bp_to_ENST00000381255_5end | |||
|description=CAGE_peak_4_at_HOPX_5end | |||
|id=chr4:57522513..57522548,- | |||
|ontology_enrichment_celltype=CL:0000838!2.17e-11!52;CL:0000542!6.54e-11!53;CL:0000051!6.54e-11!53;CL:0000791!2.22e-09!18;CL:0000789!2.22e-09!18;CL:0002420!2.22e-09!18;CL:0002419!2.22e-09!18;CL:0000790!2.22e-09!18;CL:0000625!2.99e-09!11;CL:0000236!2.96e-08!14;CL:0000084!2.74e-07!25;CL:0000827!2.74e-07!25 | |||
|ontology_enrichment_celltype_v019=CL:0000625;4.56e-13;11!CL:0000236;9.27e-12;13!CL:0000542;8.72e-10;53!CL:0000791;4.30e-09;18!CL:0000789;4.30e-09;18!CL:0002419;4.30e-09;18!CL:0000084;4.54e-08;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000838,6.76e-15,52;CL:0000542,2.01e-14,53;CL:0000051,2.01e-14,53;CL:0000625,4.13e-13,11;CL:0000236,2.68e-12,14;CL:0000791,4.14e-09,18;CL:0000789,4.14e-09,18;CL:0002420,4.14e-09,18;CL:0002419,4.14e-09,18;CL:0000790,4.14e-09,18;CL:0000988,2.16e-08,177;CL:0000084,4.45e-08,25;CL:0000827,4.45e-08,25;CL:0000037,2.58e-07,168;CL:0000738,3.97e-07,136;CL:0002087,5.57e-07,115 | |||
|ontology_enrichment_development_v019=CL:0000051;8.72e-10;53!CL:0000790;4.30e-09;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!6.88e-35!115;UBERON:0001049!6.29e-17!57;UBERON:0005068!6.29e-17!57;UBERON:0006241!6.29e-17!57;UBERON:0007135!6.29e-17!57;UBERON:0003075!9.88e-15!86;UBERON:0007284!9.88e-15!86;UBERON:0001017!5.78e-14!82;UBERON:0001893!1.20e-13!34;UBERON:0002780!1.73e-13!41;UBERON:0001890!1.73e-13!41;UBERON:0006240!1.73e-13!41;UBERON:0002020!2.24e-13!34;UBERON:0003528!2.24e-13!34;UBERON:0001869!2.27e-13!32;UBERON:0002346!3.83e-13!90;UBERON:0002791!5.31e-13!33;UBERON:0005743!5.42e-13!86;UBERON:0002616!5.67e-13!59;UBERON:0003080!7.41e-13!42;UBERON:0000178!1.82e-11!15;UBERON:0000179!1.82e-11!15;UBERON:0000463!1.82e-11!15;UBERON:0003056!1.82e-11!61;UBERON:0000073!1.01e-10!94;UBERON:0001016!1.01e-10!94;UBERON:0000955!1.11e-10!69;UBERON:0006238!1.11e-10!69;UBERON:0000956!1.23e-10!25;UBERON:0000203!1.23e-10!25;UBERON:0000153!5.04e-09!129;UBERON:0007811!5.04e-09!129;UBERON:0002619!6.35e-09!22;UBERON:0001950!4.17e-08!20;UBERON:0000033!1.20e-07!123 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;3.42e-16;15!UBERON:0000179;3.42e-16;15!UBERON:0000463;3.42e-16;15!UBERON:0002390;1.25e-12;32!UBERON:0001869;3.25e-10;32!UBERON:0000956;9.00e-10;25!UBERON:0000203;9.00e-10;25!UBERON:0002791;2.11e-09;32!UBERON:0001893;2.31e-09;34!UBERON:0003528;9.99e-09;34!UBERON:0002020;9.99e-09;34!UBERON:0002619;1.74e-07;22!UBERON:0002193;2.68e-07;42!UBERON:0001950;3.07e-07;20 | |||
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| |||
|short_description=p4@HOPX | |||
}} |
Revision as of 11:12, 13 September 2013
Short description: | p4@HOPX |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_HOPX_5end |
Coexpression cluster: | NA |
Association with transcript: | 124bp_to_ENST00000381255_5end |
EntrezGene: | HOPX |
HGNC: | 24961 |
UniProt: | Q9BPY8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphoid lineage restricted progenitor cell | 6.76e-15 | 52 |
lymphocyte | 2.01e-14 | 53 |
common lymphoid progenitor | 2.01e-14 | 53 |
CD8-positive, alpha-beta T cell | 4.13e-13 | 11 |
B cell | 2.68e-12 | 14 |
mature alpha-beta T cell | 4.14e-09 | 18 |
alpha-beta T cell | 4.14e-09 | 18 |
immature T cell | 4.14e-09 | 18 |
mature T cell | 4.14e-09 | 18 |
immature alpha-beta T cell | 4.14e-09 | 18 |
hematopoietic cell | 2.16e-08 | 177 |
T cell | 4.45e-08 | 25 |
pro-T cell | 4.45e-08 | 25 |
hematopoietic stem cell | 2.58e-07 | 168 |
leukocyte | 3.97e-07 | 136 |
nongranular leukocyte | 5.57e-07 | 115 |
Ontology term | p-value | n |
---|---|---|
adult organism | 2.63e-25 | 114 |
blood | 1.94e-16 | 15 |
haemolymphatic fluid | 1.94e-16 | 15 |
organism substance | 1.94e-16 | 15 |
central nervous system | 5.82e-11 | 81 |
cerebral hemisphere | 7.11e-11 | 32 |
neural tube | 1.89e-10 | 56 |
neural rod | 1.89e-10 | 56 |
future spinal cord | 1.89e-10 | 56 |
neural keel | 1.89e-10 | 56 |
telencephalon | 6.81e-10 | 34 |
regional part of nervous system | 1.07e-09 | 53 |
regional part of brain | 1.07e-09 | 53 |
cerebral cortex | 1.20e-09 | 25 |
pallium | 1.20e-09 | 25 |
brain grey matter | 1.27e-09 | 34 |
gray matter | 1.27e-09 | 34 |
regional part of telencephalon | 1.39e-09 | 32 |
nervous system | 7.93e-09 | 89 |
regional part of forebrain | 9.93e-09 | 41 |
forebrain | 9.93e-09 | 41 |
anterior neural tube | 9.93e-09 | 41 |
future forebrain | 9.93e-09 | 41 |
regional part of cerebral cortex | 2.00e-07 | 22 |
brain | 3.40e-07 | 68 |
future brain | 3.40e-07 | 68 |
neocortex | 3.66e-07 | 20 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.