FFCP PHASE1:Hg19::chr5:135382287..135382307,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=7045|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding|HGNC=11771|TSSclassifier=N|UniProt=|association_with_transcript=263bp_to_uc011cyb.1_5end|coexpression_cluster_id=C65|description=CAGE_peak_24_at_TGFBI_5end|id=chr5:135382287..135382307,+|ontology_enrichment_celltype=CL:0002057!1.53e-18!42;CL:0002009!2.70e-18!65;CL:0002194!3.43e-18!63;CL:0000576!3.43e-18!63;CL:0000040!3.43e-18!63;CL:0000559!3.43e-18!63;CL:0000860!1.30e-16!45;CL:0000557!1.14e-15!71;CL:0000839!3.99e-15!70;CL:0000766!9.18e-14!76;CL:0002371!4.89e-09!591;CL:0000219!4.93e-08!390;CL:0000048!5.85e-08!430;CL:0000723!1.81e-07!436;CL:0000134!2.72e-07!358;CL:0000034!3.88e-07!444;CL:0000055!5.57e-07!180|ontology_enrichment_celltype_v019=CL:0000860;3.83e-72;33!CL:0002057;3.83e-72;33!CL:0000473;5.73e-53;39!CL:0000234;5.73e-53;39!CL:0000576;7.01e-35;48!CL:0000766;2.15e-17;69!CL:0000763;7.15e-09;100!CL:0000738;3.28e-07;136!CL:0002087;6.44e-07;104|ontology_enrichment_celltype_v019_2=CL:0000860,2.75e-59,42;CL:0002057,2.75e-59,42;CL:0000473,2.44e-56,48;CL:0000234,2.44e-56,48;CL:0002194,2.13e-48,59;CL:0000576,2.13e-48,59;CL:0000040,2.13e-48,59;CL:0000559,2.13e-48,59;CL:0002009,1.10e-46,61;CL:0000839,7.58e-43,66;CL:0000557,3.80e-42,67;CL:0000766,6.19e-39,72;CL:0000763,1.70e-24,108;CL:0000049,1.70e-24,108;CL:0002087,9.99e-23,115;CL:0002031,1.37e-21,120;CL:0000738,1.66e-18,136;CL:0002032,6.59e-15,161;CL:0000837,6.59e-15,161;CL:0000037,4.32e-14,168;CL:0000988,3.90e-13,177;CL:0000134,2.28e-10,354;CL:0002320,4.72e-10,361;CL:0000219,6.13e-09,386;CL:0000048,2.20e-08,427;CL:0000723,3.50e-08,433;CL:0000034,6.36e-08,441|ontology_enrichment_development_v019=CL:0002057;2.81e-44;42!CL:0000049;2.03e-10;108|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:3571;5.03e-07;1|ontology_enrichment_disease_v019_2=DOID:3571,5.50e-07,1|ontology_enrichment_uberon=UBERON:0002371!2.39e-13!80;UBERON:0004765!5.15e-13!101;UBERON:0001434!5.15e-13!101;UBERON:0001474!2.71e-12!86;UBERON:0002204!2.18e-11!167;UBERON:0002390!1.48e-09!102;UBERON:0003061!1.48e-09!102;UBERON:0002405!2.25e-08!115;UBERON:0002193!1.11e-07!112;UBERON:0000468!2.85e-07!659|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.15e-36,76;UBERON:0001474,1.14e-33,82;UBERON:0004765,2.74e-30,90;UBERON:0001434,2.09e-29,100;UBERON:0002405,3.61e-29,93;UBERON:0002390,1.87e-27,98;UBERON:0003061,1.87e-27,98;UBERON:0002193,1.70e-24,108;UBERON:0002204,2.96e-17,167;UBERON:0003081,7.51e-11,203;UBERON:0002384,1.27e-09,371;UBERON:0000926,1.38e-07,315;UBERON:0004120,1.38e-07,315;UBERON:0006603,1.38e-07,315|phase1_expression=0.181678379270557,0.856402095563933,0.140954404095971,0,0.893922188854576,0,0,0,0,0,0,0,0.527533956456907,0,0,0.672325146451775,0,0,0,0.123121058076788,0.816002764977012,0.626909442956176,0.286235987131057,0.547497700291537,0.376627918784408,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0.200544447470142,0,0,0,0.257575567634187,6.10672602874172,4.91238726795452,4.36651310138069,1.16214518452842,4.52284676824008,2.78735733805593,2.8769239232215,3.58624989140741,2.12834006899727,0.344745680736619,0,0,6.40023954444856,5.18521685109907,3.14612878223118,4.28517449319264,0.962787081228281,5.75403413219137,7.25672860410775,6.98122801675712,5.54092175692502,0.870627715885752,1.13477044938228,0,2.26123798731069,4.69334626578181,3.25783267057675,0,0,0,0,0,0.209658645508376,0.112328631146495,0.450530678524519,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.301150238155546,0,0,0,0,0,0,0,0,0,0,0,1.00267582127178,0.434539556882471,0,1.45990461090791,0.283604451492204,0.886917589850256,0.43917392846563,0,0,0.370784442784429,0,0.348259474598534,1.19662164466979,0,0,0.371457501329565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12663051166458,0,0.573673241497627,0.709336764396714,0,0,0.98667019366864,0,0,0.326923806226917,0,0,0,0,0,0,0,0.161872944368132,0,0,0.122834317311768,0,0,0,0,0,0,0,0,0.438977620880838,0,0.150238058906597,0,0.538168907066586,0,0,1.50045548042201,0.103052529238439,0.257640540045629,0.18611685633159,2.70042131586026,0.194874010322397,0.757301322732344,0.368199594569197,0.323292113637624,1.06502877754984,0.503760491138201,0,0,0.272746120590835,0.286804595389004,0,0,0.116193942869518,0,0,0,0,0,0,0,0,0,0,0,0,0,0.237270619111097,0,0.196221465125346,0,0,0,0,0,0,0.982827216677626,0,0,0,0,0,0,0,0,0,0,1.44331342025273,0.115930404975077,0,0,0,0,0,0,0.492434012174795,0.468008530278475,0.445893486866185,0,0.335964256397719,0.283550194484773,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0.845302752556,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.00451418286425,0,0,0,0,0.579125226670317,0.61642896765115,1.07436577943937,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0,0,0,0.415941723061614,0.535286966391485,0.315404830067869,0,0,0,1.03473071292505,0,0,0,0,0,0.206768026122887,0,0,0,0,0,0.248107807818777,0.460385919864187,0.280660094433074,0.256278298511402,0.511707249066704,0.965123526861645,0,0.1542096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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=7045 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=11771 | |||
|TSSclassifier=N | |||
|UniProt= | |||
|association_with_transcript=263bp_to_uc011cyb.1_5end | |||
|coexpression_cluster_id=C65 | |||
|description=CAGE_peak_24_at_TGFBI_5end | |||
|id=chr5:135382287..135382307,+ | |||
|ontology_enrichment_celltype=CL:0002057!1.53e-18!42;CL:0002009!2.70e-18!65;CL:0002194!3.43e-18!63;CL:0000576!3.43e-18!63;CL:0000040!3.43e-18!63;CL:0000559!3.43e-18!63;CL:0000860!1.30e-16!45;CL:0000557!1.14e-15!71;CL:0000839!3.99e-15!70;CL:0000766!9.18e-14!76;CL:0002371!4.89e-09!591;CL:0000219!4.93e-08!390;CL:0000048!5.85e-08!430;CL:0000723!1.81e-07!436;CL:0000134!2.72e-07!358;CL:0000034!3.88e-07!444;CL:0000055!5.57e-07!180 | |||
|ontology_enrichment_celltype_v019=CL:0000860;3.83e-72;33!CL:0002057;3.83e-72;33!CL:0000473;5.73e-53;39!CL:0000234;5.73e-53;39!CL:0000576;7.01e-35;48!CL:0000766;2.15e-17;69!CL:0000763;7.15e-09;100!CL:0000738;3.28e-07;136!CL:0002087;6.44e-07;104 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,2.75e-59,42;CL:0002057,2.75e-59,42;CL:0000473,2.44e-56,48;CL:0000234,2.44e-56,48;CL:0002194,2.13e-48,59;CL:0000576,2.13e-48,59;CL:0000040,2.13e-48,59;CL:0000559,2.13e-48,59;CL:0002009,1.10e-46,61;CL:0000839,7.58e-43,66;CL:0000557,3.80e-42,67;CL:0000766,6.19e-39,72;CL:0000763,1.70e-24,108;CL:0000049,1.70e-24,108;CL:0002087,9.99e-23,115;CL:0002031,1.37e-21,120;CL:0000738,1.66e-18,136;CL:0002032,6.59e-15,161;CL:0000837,6.59e-15,161;CL:0000037,4.32e-14,168;CL:0000988,3.90e-13,177;CL:0000134,2.28e-10,354;CL:0002320,4.72e-10,361;CL:0000219,6.13e-09,386;CL:0000048,2.20e-08,427;CL:0000723,3.50e-08,433;CL:0000034,6.36e-08,441 | |||
|ontology_enrichment_development_v019=CL:0002057;2.81e-44;42!CL:0000049;2.03e-10;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3571;5.03e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3571,5.50e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0002371!2.39e-13!80;UBERON:0004765!5.15e-13!101;UBERON:0001434!5.15e-13!101;UBERON:0001474!2.71e-12!86;UBERON:0002204!2.18e-11!167;UBERON:0002390!1.48e-09!102;UBERON:0003061!1.48e-09!102;UBERON:0002405!2.25e-08!115;UBERON:0002193!1.11e-07!112;UBERON:0000468!2.85e-07!659 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.15e-36,76;UBERON:0001474,1.14e-33,82;UBERON:0004765,2.74e-30,90;UBERON:0001434,2.09e-29,100;UBERON:0002405,3.61e-29,93;UBERON:0002390,1.87e-27,98;UBERON:0003061,1.87e-27,98;UBERON:0002193,1.70e-24,108;UBERON:0002204,2.96e-17,167;UBERON:0003081,7.51e-11,203;UBERON:0002384,1.27e-09,371;UBERON:0000926,1.38e-07,315;UBERON:0004120,1.38e-07,315;UBERON:0006603,1.38e-07,315 | |||
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|short_description=p24@TGFBI | |||
}} |
Revision as of 13:18, 13 September 2013
Short description: | p24@TGFBI |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_24_at_TGFBI_5end |
Coexpression cluster: | C65_CD14_Eosinophils_Monocytederived_Basophils_immature_Macrophage_Neutrophils |
Association with transcript: | 263bp_to_uc011cyb.1_5end |
EntrezGene: | TGFBI |
HGNC: | 11771 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 2.75e-59 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.75e-59 | 42 |
defensive cell | 2.44e-56 | 48 |
phagocyte | 2.44e-56 | 48 |
monopoietic cell | 2.13e-48 | 59 |
monocyte | 2.13e-48 | 59 |
monoblast | 2.13e-48 | 59 |
promonocyte | 2.13e-48 | 59 |
macrophage dendritic cell progenitor | 1.10e-46 | 61 |
myeloid lineage restricted progenitor cell | 7.58e-43 | 66 |
granulocyte monocyte progenitor cell | 3.80e-42 | 67 |
myeloid leukocyte | 6.19e-39 | 72 |
myeloid cell | 1.70e-24 | 108 |
common myeloid progenitor | 1.70e-24 | 108 |
nongranular leukocyte | 9.99e-23 | 115 |
hematopoietic lineage restricted progenitor cell | 1.37e-21 | 120 |
leukocyte | 1.66e-18 | 136 |
hematopoietic oligopotent progenitor cell | 6.59e-15 | 161 |
hematopoietic multipotent progenitor cell | 6.59e-15 | 161 |
hematopoietic stem cell | 4.32e-14 | 168 |
hematopoietic cell | 3.90e-13 | 177 |
mesenchymal cell | 2.28e-10 | 354 |
connective tissue cell | 4.72e-10 | 361 |
motile cell | 6.13e-09 | 386 |
multi fate stem cell | 2.20e-08 | 427 |
somatic stem cell | 3.50e-08 | 433 |
stem cell | 6.36e-08 | 441 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.15e-36 | 76 |
bone element | 1.14e-33 | 82 |
skeletal element | 2.74e-30 | 90 |
skeletal system | 2.09e-29 | 100 |
immune system | 3.61e-29 | 93 |
hematopoietic system | 1.87e-27 | 98 |
blood island | 1.87e-27 | 98 |
hemolymphoid system | 1.70e-24 | 108 |
musculoskeletal system | 2.96e-17 | 167 |
lateral plate mesoderm | 7.51e-11 | 203 |
connective tissue | 1.27e-09 | 371 |
mesoderm | 1.38e-07 | 315 |
mesoderm-derived structure | 1.38e-07 | 315 |
presumptive mesoderm | 1.38e-07 | 315 |
Ontology term | p-value | n |
---|---|---|
liver cancer | 5.50e-07 | 1 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.