FFCP PHASE1:Mm9::chr18:69752912..69752928,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=21413|HGNC=|MCL_coexpression_id=107|UniProt=Q60722|association_with_transcript=-142bp_to_ENSMUST00000114978_5end|description=CAGE_peak_9_at_Tcf4_5end|id=chr18:69752912..69752928,+|ontology_enrichment_celltype=CL:0002319!8.17e-11!43;CL:0000221!2.00e-10!44;CL:0000133!2.00e-10!44;CL:0000540!1.57e-09!33;CL:0000047!1.57e-09!33;CL:0000031!1.57e-09!33;CL:0000404!1.57e-09!33;CL:0000055!3.75e-09!50;CL:0000393!2.07e-08!39;CL:0000211!2.07e-08!39;CL:0000107!1.21e-07!9|ontology_enrichment_celltype_v019_2=CL:0002319,1.66e-12,43;CL:0000221,6.08e-12,44;CL:0000133,6.08e-12,44;CL:0000540,7.07e-11,33;CL:0000047,7.07e-11,33;CL:0000031,7.07e-11,33;CL:0000404,7.07e-11,33;CL:0000107,1.10e-09,9;CL:0000393,1.70e-08,39;CL:0000211,1.70e-08,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004121!2.30e-19!102;UBERON:0000924!2.30e-19!102;UBERON:0006601!2.30e-19!102;UBERON:0001017!2.45e-19!73;UBERON:0005743!2.45e-19!73;UBERON:0000073!2.22e-18!75;UBERON:0001016!2.22e-18!75;UBERON:0002346!2.49e-14!71;UBERON:0003075!2.49e-14!71;UBERON:0007284!2.49e-14!71;UBERON:0000033!4.32e-12!63;UBERON:0001049!5.63e-12!52;UBERON:0005068!5.63e-12!52;UBERON:0006241!5.63e-12!52;UBERON:0007135!5.63e-12!52;UBERON:0000956!2.48e-11!21;UBERON:0001869!2.48e-11!21;UBERON:0000203!2.48e-11!21;UBERON:0000955!3.22e-11!50;UBERON:0006238!3.22e-11!50;UBERON:0002616!8.92e-11!49;UBERON:0002020!2.10e-10!34;UBERON:0003056!2.53e-09!49;UBERON:0002791!3.87e-09!29;UBERON:0003528!3.87e-09!29;UBERON:0001893!3.87e-09!29;UBERON:0002619!6.09e-09!17;UBERON:0003080!3.36e-08!40;UBERON:0002780!4.50e-08!39;UBERON:0001890!4.50e-08!39;UBERON:0006240!4.50e-08!39;UBERON:0002410!1.21e-07!9;UBERON:0000153!5.93e-07!94|ontology_enrichment_uberon_v019_2=UBERON:0004121,5.03e-21,95;UBERON:0000924,5.03e-21,95;UBERON:0006601,5.03e-21,95;UBERON:0001017,7.16e-21,73;UBERON:0001016,9.67e-20,75;UBERON:0002346,6.21e-16,64;UBERON:0003075,6.21e-16,64;UBERON:0007284,6.21e-16,64;UBERON:0010371,7.51e-16,73;UBERON:0000956,7.76e-14,21;UBERON:0001869,7.76e-14,21;UBERON:0000203,7.76e-14,21;UBERON:0000073,1.15e-12,54;UBERON:0001049,1.89e-12,52;UBERON:0005068,1.89e-12,52;UBERON:0006241,1.89e-12,52;UBERON:0007135,1.89e-12,52;UBERON:0002020,2.98e-12,34;UBERON:0010314,6.63e-12,92;UBERON:0000955,6.96e-11,47;UBERON:0006238,6.96e-11,47;UBERON:0002619,1.12e-10,17;UBERON:0003528,1.43e-10,29;UBERON:0002791,1.43e-10,29;UBERON:0001893,1.43e-10,29;UBERON:0002616,2.40e-10,46;UBERON:0002410,1.10e-09,9;UBERON:0003056,5.95e-09,49;UBERON:0003080,8.82e-08,40;UBERON:0002780,1.30e-07,39;UBERON:0001890,1.30e-07,39;UBERON:0006240,1.30e-07,39;UBERON:0000010,3.10e-07,11|phase1_expression=0.640595388419176,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157731082679119,0.411343300817216,0.42438965179803,0.680346321208558,0,0,0.159992422793407,0,0,0,0,0,0,0,0,0,0,0,0,0.204169356262369,0,0,0,0,0,0,0.377690453926732,0.101376931219515,0.367093504323363,4.69434806608824,3.48840250208714,9.00713349211335,11.4713640453827,0.699932108126813,0,0.335565212115473,0,0,0.514518872071894,0.85960031981627,1.54701627683233,0.404632921719196,2.11596391708813,1.90149421051854,0.338844532069132,0.889294796111139,0.449949858640699,0,0,2.99600110518405,4.61061966385865,9.22837549545451,7.02030879324791,6.73039876324422,1.99955689082663,1.10434270475807,4.65465037016825,5.271500906003,2.75765635983006,1.10115880999389,1.40456071893706,1.38245879930619,0.395658863190582,0.548925861614458,0,1.3959149950069,0,0.916789486660861,1.17851434189467,2.42031857358475,2.60959224155421,0,0.529000920747499,3.76823835312181,0,0,0,0,0.448026887097336,0.140444420131752,0.511290967734173,0.779358013808606,0.35333957451034,0.281686839553361,1.28326477414318,0,0,0,0,0,0.11418387971906,2.33044095282455,1.03909497345377,0.173485326766136,0.304465478312141,0.461230994512117,0.753613202763113,1.05829836422134,1.25666591329675,0,0.86759614151947,0,1.61766849947409,0.220841518460394,0.484875253135222,0,2.04946557908083,1.67557365450764,0,0.718890747035522,0,1.14363204365758,1.19832511523858,2.28750301409313,1.50785222535437,3.65031072403781,4.60287823194595,1.24672826735736,2.43361894601636,1.12023300235348,0.746441823660558,0,0.210441855886474,0.520481771850815,0.229902104433473,2.70093194708024,1.80845781402858,1.56483948048054,3.07472928683639,3.5606655332697,1.55222022443409,0.646703978798527,4.72765200419548,3.51902248327898,3.94552318369635,6.95118123063995,4.52727816478817,3.90986059175093,0.995171334092466,0,0,0.568326998791185,0.621377317606506,0,0.180062061461015,0.473489471170421,1.37734962223183,0.462801338662135,0.232533944750408,0.268273401399619,0.233530684734339,1.31647879930784,1.47750717671186,1.37816976227955,1.46199987425332,1.09775057645525,1.07365135008297,2.52347938276953,11.3195073617213,0,0,0.639864751605702,0.464473343720877,1.03093969057675,0.403367049246685,0.22237804384487,0.380451252225118,0,0.329397909448022,0,0.596869416123452,0.19496408711912,0,0.216138049874694,0.398282546508734,0.189667900953082,0.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| ||
|EntrezGene=21413 | |||
|HGNC= | |||
|MCL_coexpression_id=107 | |||
|UniProt=Q60722 | |||
|association_with_transcript=-142bp_to_ENSMUST00000114978_5end | |||
|description=CAGE_peak_9_at_Tcf4_5end | |||
|id=chr18:69752912..69752928,+ | |||
|ontology_enrichment_celltype=CL:0002319!8.17e-11!43;CL:0000221!2.00e-10!44;CL:0000133!2.00e-10!44;CL:0000540!1.57e-09!33;CL:0000047!1.57e-09!33;CL:0000031!1.57e-09!33;CL:0000404!1.57e-09!33;CL:0000055!3.75e-09!50;CL:0000393!2.07e-08!39;CL:0000211!2.07e-08!39;CL:0000107!1.21e-07!9 | |||
|ontology_enrichment_celltype_v019_2=CL:0002319,1.66e-12,43;CL:0000221,6.08e-12,44;CL:0000133,6.08e-12,44;CL:0000540,7.07e-11,33;CL:0000047,7.07e-11,33;CL:0000031,7.07e-11,33;CL:0000404,7.07e-11,33;CL:0000107,1.10e-09,9;CL:0000393,1.70e-08,39;CL:0000211,1.70e-08,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!2.30e-19!102;UBERON:0000924!2.30e-19!102;UBERON:0006601!2.30e-19!102;UBERON:0001017!2.45e-19!73;UBERON:0005743!2.45e-19!73;UBERON:0000073!2.22e-18!75;UBERON:0001016!2.22e-18!75;UBERON:0002346!2.49e-14!71;UBERON:0003075!2.49e-14!71;UBERON:0007284!2.49e-14!71;UBERON:0000033!4.32e-12!63;UBERON:0001049!5.63e-12!52;UBERON:0005068!5.63e-12!52;UBERON:0006241!5.63e-12!52;UBERON:0007135!5.63e-12!52;UBERON:0000956!2.48e-11!21;UBERON:0001869!2.48e-11!21;UBERON:0000203!2.48e-11!21;UBERON:0000955!3.22e-11!50;UBERON:0006238!3.22e-11!50;UBERON:0002616!8.92e-11!49;UBERON:0002020!2.10e-10!34;UBERON:0003056!2.53e-09!49;UBERON:0002791!3.87e-09!29;UBERON:0003528!3.87e-09!29;UBERON:0001893!3.87e-09!29;UBERON:0002619!6.09e-09!17;UBERON:0003080!3.36e-08!40;UBERON:0002780!4.50e-08!39;UBERON:0001890!4.50e-08!39;UBERON:0006240!4.50e-08!39;UBERON:0002410!1.21e-07!9;UBERON:0000153!5.93e-07!94 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004121,5.03e-21,95;UBERON:0000924,5.03e-21,95;UBERON:0006601,5.03e-21,95;UBERON:0001017,7.16e-21,73;UBERON:0001016,9.67e-20,75;UBERON:0002346,6.21e-16,64;UBERON:0003075,6.21e-16,64;UBERON:0007284,6.21e-16,64;UBERON:0010371,7.51e-16,73;UBERON:0000956,7.76e-14,21;UBERON:0001869,7.76e-14,21;UBERON:0000203,7.76e-14,21;UBERON:0000073,1.15e-12,54;UBERON:0001049,1.89e-12,52;UBERON:0005068,1.89e-12,52;UBERON:0006241,1.89e-12,52;UBERON:0007135,1.89e-12,52;UBERON:0002020,2.98e-12,34;UBERON:0010314,6.63e-12,92;UBERON:0000955,6.96e-11,47;UBERON:0006238,6.96e-11,47;UBERON:0002619,1.12e-10,17;UBERON:0003528,1.43e-10,29;UBERON:0002791,1.43e-10,29;UBERON:0001893,1.43e-10,29;UBERON:0002616,2.40e-10,46;UBERON:0002410,1.10e-09,9;UBERON:0003056,5.95e-09,49;UBERON:0003080,8.82e-08,40;UBERON:0002780,1.30e-07,39;UBERON:0001890,1.30e-07,39;UBERON:0006240,1.30e-07,39;UBERON:0000010,3.10e-07,11 | |||
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| |||
|short_description=p9@Tcf4 | |||
}} |
Revision as of 16:41, 13 September 2013
Short description: | p9@Tcf4 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_9_at_Tcf4_5end |
Coexpression cluster: | MCL_coexpression_mm9:107 |
Association with transcript: | -142bp_to_ENSMUST00000114978_5end |
EntrezGene: | Tcf4 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 1.66e-12 | 43 |
ectodermal cell | 6.08e-12 | 44 |
neurectodermal cell | 6.08e-12 | 44 |
neuron | 7.07e-11 | 33 |
neuronal stem cell | 7.07e-11 | 33 |
neuroblast | 7.07e-11 | 33 |
electrically signaling cell | 7.07e-11 | 33 |
autonomic neuron | 1.10e-09 | 9 |
electrically responsive cell | 1.70e-08 | 39 |
electrically active cell | 1.70e-08 | 39 |
Ontology term | p-value | n |
---|---|---|
ectoderm-derived structure | 5.03e-21 | 95 |
ectoderm | 5.03e-21 | 95 |
presumptive ectoderm | 5.03e-21 | 95 |
central nervous system | 7.16e-21 | 73 |
nervous system | 9.67e-20 | 75 |
neurectoderm | 6.21e-16 | 64 |
neural plate | 6.21e-16 | 64 |
presumptive neural plate | 6.21e-16 | 64 |
ecto-epithelium | 7.51e-16 | 73 |
cerebral cortex | 7.76e-14 | 21 |
cerebral hemisphere | 7.76e-14 | 21 |
pallium | 7.76e-14 | 21 |
regional part of nervous system | 1.15e-12 | 54 |
neural tube | 1.89e-12 | 52 |
neural rod | 1.89e-12 | 52 |
future spinal cord | 1.89e-12 | 52 |
neural keel | 1.89e-12 | 52 |
gray matter | 2.98e-12 | 34 |
structure with developmental contribution from neural crest | 6.63e-12 | 92 |
brain | 6.96e-11 | 47 |
future brain | 6.96e-11 | 47 |
regional part of cerebral cortex | 1.12e-10 | 17 |
brain grey matter | 1.43e-10 | 29 |
regional part of telencephalon | 1.43e-10 | 29 |
telencephalon | 1.43e-10 | 29 |
regional part of brain | 2.40e-10 | 46 |
autonomic nervous system | 1.10e-09 | 9 |
pre-chordal neural plate | 5.95e-09 | 49 |
anterior neural tube | 8.82e-08 | 40 |
regional part of forebrain | 1.30e-07 | 39 |
forebrain | 1.30e-07 | 39 |
future forebrain | 1.30e-07 | 39 |
peripheral nervous system | 3.10e-07 | 11 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.