FFCP PHASE1:Mm9::chr18:77804046..77804088,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=225743|HGNC=|MCL_coexpression_id=13|UniProt=E9QAU8|association_with_transcript=-171bp_to_ENSMUST00000026494,NM_001164504,uc008frj.2,uc008frm.2_5end|description=CAGE_peak_2_at_Rnf165_5end|id=chr18:77804046..77804088,-|ontology_enrichment_celltype=CL:0000540!3.82e-17!33;CL:0000047!3.82e-17!33;CL:0000031!3.82e-17!33;CL:0000404!3.82e-17!33;CL:0000117!1.68e-13!23;CL:0000337!1.68e-13!23;CL:0000393!7.34e-12!39;CL:0000211!7.34e-12!39;CL:0002319!3.67e-11!43;CL:0000221!3.67e-11!44;CL:0000133!3.67e-11!44;CL:0000055!2.43e-07!50|ontology_enrichment_celltype_v019_2=CL:0000540,1.97e-21,33;CL:0000047,1.97e-21,33;CL:0000031,1.97e-21,33;CL:0000404,1.97e-21,33;CL:0000117,8.82e-17,23;CL:0000337,8.82e-17,23;CL:0000393,6.81e-16,39;CL:0000211,6.81e-16,39;CL:0002319,1.80e-14,43;CL:0000221,8.02e-14,44;CL:0000133,8.02e-14,44|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004121!7.28e-27!102;UBERON:0000924!7.28e-27!102;UBERON:0006601!7.28e-27!102;UBERON:0001017!1.86e-25!73;UBERON:0005743!1.86e-25!73;UBERON:0002346!5.94e-25!71;UBERON:0003075!5.94e-25!71;UBERON:0007284!5.94e-25!71;UBERON:0000073!4.22e-24!75;UBERON:0001016!4.22e-24!75;UBERON:0000033!2.26e-22!63;UBERON:0003056!9.19e-22!49;UBERON:0001049!2.15e-19!52;UBERON:0005068!2.15e-19!52;UBERON:0006241!2.15e-19!52;UBERON:0007135!2.15e-19!52;UBERON:0002020!3.51e-19!34;UBERON:0000955!2.92e-18!50;UBERON:0006238!2.92e-18!50;UBERON:0002616!9.48e-18!49;UBERON:0003080!1.33e-17!40;UBERON:0002780!1.94e-17!39;UBERON:0001890!1.94e-17!39;UBERON:0006240!1.94e-17!39;UBERON:0002791!1.79e-16!29;UBERON:0003528!1.79e-16!29;UBERON:0001893!1.79e-16!29;UBERON:0000956!1.23e-12!21;UBERON:0001869!1.23e-12!21;UBERON:0000203!1.23e-12!21;UBERON:0000153!1.65e-10!94;UBERON:0007811!1.87e-10!86;UBERON:0002619!3.99e-10!17;UBERON:0000468!4.38e-09!333;UBERON:0002021!1.33e-07!10;UBERON:0000411!1.33e-07!10;UBERON:0001950!1.33e-07!10;UBERON:0000922!2.65e-07!328|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.86e-31,73;UBERON:0002346,2.64e-30,64;UBERON:0003075,2.64e-30,64;UBERON:0007284,2.64e-30,64;UBERON:0001016,1.05e-29,75;UBERON:0004121,1.10e-29,95;UBERON:0000924,1.10e-29,95;UBERON:0006601,1.10e-29,95;UBERON:0010371,3.85e-26,73;UBERON:0003056,6.34e-25,49;UBERON:0000073,2.32e-24,54;UBERON:0002020,4.30e-23,34;UBERON:0001049,6.19e-23,52;UBERON:0005068,6.19e-23,52;UBERON:0006241,6.19e-23,52;UBERON:0007135,6.19e-23,52;UBERON:0000955,6.48e-20,47;UBERON:0006238,6.48e-20,47;UBERON:0003080,1.09e-19,40;UBERON:0003528,1.20e-19,29;UBERON:0002791,1.20e-19,29;UBERON:0001893,1.20e-19,29;UBERON:0002780,1.83e-19,39;UBERON:0001890,1.83e-19,39;UBERON:0006240,1.83e-19,39;UBERON:0002616,2.78e-19,46;UBERON:0010314,5.13e-18,92;UBERON:0000956,9.47e-15,21;UBERON:0001869,9.47e-15,21;UBERON:0000203,9.47e-15,21;UBERON:0002619,1.41e-11,17;UBERON:0002021,2.87e-09,10;UBERON:0000411,2.87e-09,10;UBERON:0001950,2.87e-09,10|phase1_expression=1.60148847104794,0,0,0.60492842261366,0.500895729946347,0.16787927191189,0,0,0,0,0.171217968225505,0.0797721589953364,0,0,0,0,0,0,0.137114433605739,0,0.595303031057488,0.595745707205312,0,0.159992422793407,0.22940928106717,0,0.430761996159075,0,0.190023419456374,0,0,0,0,0,0.288851619751275,0.332469290716985,0,0,0,0,0,0,0,0,0,0.183546752161682,0,0,1.09843091367236,0.972149495371417,0.279972843250725,0,0,0,0,0,0.286533439938757,0,26.5034563726073,21.1596391708813,27.2547503507657,0.338844532069132,0,0,0,0,0,1.15265491596466,18.0419925416751,19.7108669964268,14.9330722559481,4.28476476605705,5.07997644188711,14.6988959057945,16.1020391310637,13.7882817991503,5.50579404996943,3.83062014255563,3.5329502648936,19.5191705840687,16.5592634920361,14.5855743755893,2.23346399201105,2.8138130501584,3.66715794664344,7.66034322231536,7.54569908235246,16.5895506784518,0,0.302286240427142,1.15945795480671,0,0,0,0,0,0.140444420131752,0,0,0,0.985903938436763,0,0,0,0,0,0,0.22836775943812,0.258937883647172,1.48442139064825,1.38788261412909,1.21786191324856,0.922461989024234,1.20578112442098,0.587943535678524,0.502666365318702,0.247194967734374,0.144599356919912,0,0.808834249737046,0,0,1.86391761218122,3.51336956413857,3.77004072264219,0,0,0,0,1.9472783122627,6.8625090422794,15.0785222535437,7.12679712788333,5.62574006126727,1.87009240103604,6.48965052271031,1.32391173005411,0.124406970610093,0,1.47309299120532,4.94457683258274,4.13823787980251,6.66229880279792,6.63101198477146,8.70867189136997,9.73664274164858,8.33945348581587,3.10444044886819,1.94011193639558,1.51284864134255,1.75951124163949,0.43839146485515,0.834141747676794,0.696504333044333,0.205782136407943,0.995171334092466,0,0,0,1.03562886267751,0.938104239924385,0.540186184383045,0.710234206755631,0.393528463494808,0.771335564436891,0.697601834251224,0.536546802799238,1.28441876603886,0.329119699826961,0.164167464079095,0.243206428637567,0.438599962275997,0.439100230582101,0.134206418760372,6.72927835405207,15.1269780197548,0.660837565967596,0.264450566663544,1.91959425481711,1.16118335930219,1.67527699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| ||
|EntrezGene=225743 | |||
|HGNC= | |||
|MCL_coexpression_id=13 | |||
|UniProt=E9QAU8 | |||
|association_with_transcript=-171bp_to_ENSMUST00000026494,NM_001164504,uc008frj.2,uc008frm.2_5end | |||
|description=CAGE_peak_2_at_Rnf165_5end | |||
|id=chr18:77804046..77804088,- | |||
|ontology_enrichment_celltype=CL:0000540!3.82e-17!33;CL:0000047!3.82e-17!33;CL:0000031!3.82e-17!33;CL:0000404!3.82e-17!33;CL:0000117!1.68e-13!23;CL:0000337!1.68e-13!23;CL:0000393!7.34e-12!39;CL:0000211!7.34e-12!39;CL:0002319!3.67e-11!43;CL:0000221!3.67e-11!44;CL:0000133!3.67e-11!44;CL:0000055!2.43e-07!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,1.97e-21,33;CL:0000047,1.97e-21,33;CL:0000031,1.97e-21,33;CL:0000404,1.97e-21,33;CL:0000117,8.82e-17,23;CL:0000337,8.82e-17,23;CL:0000393,6.81e-16,39;CL:0000211,6.81e-16,39;CL:0002319,1.80e-14,43;CL:0000221,8.02e-14,44;CL:0000133,8.02e-14,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!7.28e-27!102;UBERON:0000924!7.28e-27!102;UBERON:0006601!7.28e-27!102;UBERON:0001017!1.86e-25!73;UBERON:0005743!1.86e-25!73;UBERON:0002346!5.94e-25!71;UBERON:0003075!5.94e-25!71;UBERON:0007284!5.94e-25!71;UBERON:0000073!4.22e-24!75;UBERON:0001016!4.22e-24!75;UBERON:0000033!2.26e-22!63;UBERON:0003056!9.19e-22!49;UBERON:0001049!2.15e-19!52;UBERON:0005068!2.15e-19!52;UBERON:0006241!2.15e-19!52;UBERON:0007135!2.15e-19!52;UBERON:0002020!3.51e-19!34;UBERON:0000955!2.92e-18!50;UBERON:0006238!2.92e-18!50;UBERON:0002616!9.48e-18!49;UBERON:0003080!1.33e-17!40;UBERON:0002780!1.94e-17!39;UBERON:0001890!1.94e-17!39;UBERON:0006240!1.94e-17!39;UBERON:0002791!1.79e-16!29;UBERON:0003528!1.79e-16!29;UBERON:0001893!1.79e-16!29;UBERON:0000956!1.23e-12!21;UBERON:0001869!1.23e-12!21;UBERON:0000203!1.23e-12!21;UBERON:0000153!1.65e-10!94;UBERON:0007811!1.87e-10!86;UBERON:0002619!3.99e-10!17;UBERON:0000468!4.38e-09!333;UBERON:0002021!1.33e-07!10;UBERON:0000411!1.33e-07!10;UBERON:0001950!1.33e-07!10;UBERON:0000922!2.65e-07!328 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.86e-31,73;UBERON:0002346,2.64e-30,64;UBERON:0003075,2.64e-30,64;UBERON:0007284,2.64e-30,64;UBERON:0001016,1.05e-29,75;UBERON:0004121,1.10e-29,95;UBERON:0000924,1.10e-29,95;UBERON:0006601,1.10e-29,95;UBERON:0010371,3.85e-26,73;UBERON:0003056,6.34e-25,49;UBERON:0000073,2.32e-24,54;UBERON:0002020,4.30e-23,34;UBERON:0001049,6.19e-23,52;UBERON:0005068,6.19e-23,52;UBERON:0006241,6.19e-23,52;UBERON:0007135,6.19e-23,52;UBERON:0000955,6.48e-20,47;UBERON:0006238,6.48e-20,47;UBERON:0003080,1.09e-19,40;UBERON:0003528,1.20e-19,29;UBERON:0002791,1.20e-19,29;UBERON:0001893,1.20e-19,29;UBERON:0002780,1.83e-19,39;UBERON:0001890,1.83e-19,39;UBERON:0006240,1.83e-19,39;UBERON:0002616,2.78e-19,46;UBERON:0010314,5.13e-18,92;UBERON:0000956,9.47e-15,21;UBERON:0001869,9.47e-15,21;UBERON:0000203,9.47e-15,21;UBERON:0002619,1.41e-11,17;UBERON:0002021,2.87e-09,10;UBERON:0000411,2.87e-09,10;UBERON:0001950,2.87e-09,10 | |||
|phase1_expression=1.60148847104794,0,0,0.60492842261366,0.500895729946347,0.16787927191189,0,0,0,0,0.171217968225505,0.0797721589953364,0,0,0,0,0,0,0.137114433605739,0,0.595303031057488,0.595745707205312,0,0.159992422793407,0.22940928106717,0,0.430761996159075,0,0.190023419456374,0,0,0,0,0,0.288851619751275,0.332469290716985,0,0,0,0,0,0,0,0,0,0.183546752161682,0,0,1.09843091367236,0.972149495371417,0.279972843250725,0,0,0,0,0,0.286533439938757,0,26.5034563726073,21.1596391708813,27.2547503507657,0.338844532069132,0,0,0,0,0,1.15265491596466,18.0419925416751,19.7108669964268,14.9330722559481,4.28476476605705,5.07997644188711,14.6988959057945,16.1020391310637,13.7882817991503,5.50579404996943,3.83062014255563,3.5329502648936,19.5191705840687,16.5592634920361,14.5855743755893,2.23346399201105,2.8138130501584,3.66715794664344,7.66034322231536,7.54569908235246,16.5895506784518,0,0.302286240427142,1.15945795480671,0,0,0,0,0,0.140444420131752,0,0,0,0.985903938436763,0,0,0,0,0,0,0.22836775943812,0.258937883647172,1.48442139064825,1.38788261412909,1.21786191324856,0.922461989024234,1.20578112442098,0.587943535678524,0.502666365318702,0.247194967734374,0.144599356919912,0,0.808834249737046,0,0,1.86391761218122,3.51336956413857,3.77004072264219,0,0,0,0,1.9472783122627,6.8625090422794,15.0785222535437,7.12679712788333,5.62574006126727,1.87009240103604,6.48965052271031,1.32391173005411,0.124406970610093,0,1.47309299120532,4.94457683258274,4.13823787980251,6.66229880279792,6.63101198477146,8.70867189136997,9.73664274164858,8.33945348581587,3.10444044886819,1.94011193639558,1.51284864134255,1.75951124163949,0.43839146485515,0.834141747676794,0.696504333044333,0.205782136407943,0.995171334092466,0,0,0,1.03562886267751,0.938104239924385,0.540186184383045,0.710234206755631,0.393528463494808,0.771335564436891,0.697601834251224,0.536546802799238,1.28441876603886,0.329119699826961,0.164167464079095,0.243206428637567,0.438599962275997,0.439100230582101,0.134206418760372,6.72927835405207,15.1269780197548,0.660837565967596,0.264450566663544,1.91959425481711,1.16118335930219,1.67527699718721,0.605050573870028,0.889512175379481,1.52180500890047,0.474529061544512,0.164698954724011,0,0.795825888164603,0.19496408711912,0,0,0,1.51734320762465,1.5994791765362,0,0.610953983535943,1.16371492300575,1.61312385747733,1.70738650235495,0.442830443938806,0.31399745568275,0.123397163921801,0,0.333690211432188,0.589676985339609,0,0.202860121388503,0,0,0.287696137450811,0.486405680325106,0,0,0.372140947668503,1.24815069245824,0.252578877947112,0.179397413521912,0,0.369506380333209,1.51593129416388,1.30371981153621,1.35796068620151,0.704070744865506,0.335012514883631,1.19021820443007,0,1.41871629695572,1.55025282754142,1.43509291791738,0.327726629431476,0,0,0,0,0,0.275936746304732,1.44495530989013,2.10981035865966,0,0.252470927204373,5.36363973007636,3.90438744296638,5.38558494331997,3.34556317133573,4.23317480756549,5.66153061577665,2.83367491172426,3.79932615284705,7.11518000303742,6.42642632843614,0.141940085208269,0.178065603667255,0.488660878060728,0.329940245945071,0,0.728341908464944,0.906970670894253,0,0.885905678642318,0.307435147943927,0.516856586336442,0,0.356497378384721,0.316036757935816,0,1.03135543248187,2.7235168460303,2.34079422240703,1.94038025674132,1.50035924522115,1.77340233642274,1.60531935841864,0.822745103010605,0.913394847343798,0.23467170806371,0.42366414172764,0,1.97863503529776,0.807322133479528,1.08563264870681,0.119372344003136,0.820704498725306,0,1.8542530201051,0,0.82554747185289,0.555583582109135,0,0.136694227721025,0.228778173206523,0,0,0,0,1.42351197111511,2.23651413839534,0.86404272657441,0.209088296014469,0.87345025498471,0.809186078308924,0.41326727862668,0,0.259229946583586,0.621339313086926,0,0.299033092087958,0,0.583353565032143,0.645799117388655,0.337912250981556,0.58678619322877,0.5208175393758,0.524296722128554,0.241584120826006,0,0,1.41907650703115,0.102710957164827,0.129920822977795,0.537080087002444,0.198681354781265,0.360586348559907,0.147689527174577,0,0.0762068066549998,0.201652370273681,0,0,0.116876902181569,0.906921534460845,0,0.0897138566094757,0.167884616364078,0.386379188064381,0.187682475451182,0,0.428736758158132,0,16.942555278512,20.2543104063158,20.0513429703789,16.6697586873377,8.90607275701835,9.06472676867641,11.4753825039407,9.90706647093285,11.3285602246051,9.83744592328458,7.16132698330819,7.98049746802062,6.82934423016537,3.8897074730927,5.24032906569956,3.49302666055027,4.00044110042907,2.47242068686673,2.56735367673452,4.04315538822076,4.81610669791456,3.77252682772152,4.30750934361459,3.9695594491019,3.61843454420364,4.76293691283074,3.36064545240081,1.15745532278223,3.70877310722976,3.67997300335993,2.74295401908332,2.30718548007139,2.38436189947321,2.76158191601424,2.72917203204459,2.62305284464197,2.19513567447327,2.36762740294059,3.12349461845482,2.80571135828869,2.37270036248348,3.44765688314472,2.04615521584845,3.25367366490529,3.08650577569826,7.49431733813838,3.275042518235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| |||
|short_description=p2@Rnf165 | |||
}} |
Revision as of 16:47, 13 September 2013
Short description: | p2@Rnf165 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Rnf165_5end |
Coexpression cluster: | MCL_coexpression_mm9:13 |
Association with transcript: | -171bp_to_ENSMUST00000026494, NM_001164504, uc008frj.2, uc008frm.2_5end |
EntrezGene: | Rnf165 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 1.97e-21 | 33 |
neuronal stem cell | 1.97e-21 | 33 |
neuroblast | 1.97e-21 | 33 |
electrically signaling cell | 1.97e-21 | 33 |
CNS neuron (sensu Vertebrata) | 8.82e-17 | 23 |
neuroblast (sensu Vertebrata) | 8.82e-17 | 23 |
electrically responsive cell | 6.81e-16 | 39 |
electrically active cell | 6.81e-16 | 39 |
neural cell | 1.80e-14 | 43 |
ectodermal cell | 8.02e-14 | 44 |
neurectodermal cell | 8.02e-14 | 44 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 2.86e-31 | 73 |
neurectoderm | 2.64e-30 | 64 |
neural plate | 2.64e-30 | 64 |
presumptive neural plate | 2.64e-30 | 64 |
nervous system | 1.05e-29 | 75 |
ectoderm-derived structure | 1.10e-29 | 95 |
ectoderm | 1.10e-29 | 95 |
presumptive ectoderm | 1.10e-29 | 95 |
ecto-epithelium | 3.85e-26 | 73 |
pre-chordal neural plate | 6.34e-25 | 49 |
regional part of nervous system | 2.32e-24 | 54 |
gray matter | 4.30e-23 | 34 |
neural tube | 6.19e-23 | 52 |
neural rod | 6.19e-23 | 52 |
future spinal cord | 6.19e-23 | 52 |
neural keel | 6.19e-23 | 52 |
brain | 6.48e-20 | 47 |
future brain | 6.48e-20 | 47 |
anterior neural tube | 1.09e-19 | 40 |
brain grey matter | 1.20e-19 | 29 |
regional part of telencephalon | 1.20e-19 | 29 |
telencephalon | 1.20e-19 | 29 |
regional part of forebrain | 1.83e-19 | 39 |
forebrain | 1.83e-19 | 39 |
future forebrain | 1.83e-19 | 39 |
regional part of brain | 2.78e-19 | 46 |
structure with developmental contribution from neural crest | 5.13e-18 | 92 |
cerebral cortex | 9.47e-15 | 21 |
cerebral hemisphere | 9.47e-15 | 21 |
pallium | 9.47e-15 | 21 |
regional part of cerebral cortex | 1.41e-11 | 17 |
occipital lobe | 2.87e-09 | 10 |
visual cortex | 2.87e-09 | 10 |
neocortex | 2.87e-09 | 10 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.