FFCP PHASE1:Mm9::chr1:136605836..136605866,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=20980|HGNC=|MCL_coexpression_id=742|UniProt=P46097|association_with_transcript=-10bp_to_ENSMUST00000121990,uc007csk.1_5end|description=CAGE_peak_2_at_Syt2_5end|id=chr1:136605836..136605866,+|ontology_enrichment_celltype=CL:0000117!6.56e-15!23;CL:0000337!6.56e-15!23;CL:0000540!3.70e-08!33;CL:0000047!3.70e-08!33;CL:0000031!3.70e-08!33;CL:0000404!3.70e-08!33|ontology_enrichment_celltype_v019_2=CL:0000117,2.23e-17,23;CL:0000337,2.23e-17,23;CL:0000540,8.22e-11,33;CL:0000047,8.22e-11,33;CL:0000031,8.22e-11,33;CL:0000404,8.22e-11,33;CL:0000393,1.61e-08,39;CL:0000211,1.61e-08,39;CL:0002319,2.32e-07,43;CL:0000221,4.18e-07,44;CL:0000133,4.18e-07,44;CL:0002610,6.90e-07,3;CL:0002612,7.86e-07,3|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001049!5.89e-20!52;UBERON:0005068!5.89e-20!52;UBERON:0006241!5.89e-20!52;UBERON:0007135!5.89e-20!52;UBERON:0002020!1.01e-18!34;UBERON:0002346!1.05e-17!71;UBERON:0003075!1.05e-17!71;UBERON:0007284!1.05e-17!71;UBERON:0002616!1.63e-17!49;UBERON:0000955!8.17e-17!50;UBERON:0006238!8.17e-17!50;UBERON:0000033!4.64e-16!63;UBERON:0000073!1.22e-15!75;UBERON:0001016!1.22e-15!75;UBERON:0001017!1.50e-15!73;UBERON:0005743!1.50e-15!73;UBERON:0003056!4.79e-15!49;UBERON:0002791!1.65e-14!29;UBERON:0003528!1.65e-14!29;UBERON:0001893!1.65e-14!29;UBERON:0003080!1.67e-13!40;UBERON:0002780!8.87e-13!39;UBERON:0001890!8.87e-13!39;UBERON:0006240!8.87e-13!39;UBERON:0004121!6.07e-12!102;UBERON:0000924!6.07e-12!102;UBERON:0006601!6.07e-12!102;UBERON:0007811!4.96e-11!86;UBERON:0000956!5.57e-10!21;UBERON:0001869!5.57e-10!21;UBERON:0000203!5.57e-10!21;UBERON:0000153!4.61e-09!94;UBERON:0002619!2.62e-08!17;UBERON:0002021!2.87e-08!10;UBERON:0000411!2.87e-08!10;UBERON:0001950!2.87e-08!10;UBERON:0003076!2.05e-07!12;UBERON:0003057!2.05e-07!12|ontology_enrichment_uberon_v019_2=UBERON:0000073,6.32e-33,54;UBERON:0001049,1.22e-29,52;UBERON:0005068,1.22e-29,52;UBERON:0006241,1.22e-29,52;UBERON:0007135,1.22e-29,52;UBERON:0001017,7.12e-27,73;UBERON:0001016,6.77e-26,75;UBERON:0002020,2.62e-25,34;UBERON:0002346,6.05e-24,64;UBERON:0003075,6.05e-24,64;UBERON:0007284,6.05e-24,64;UBERON:0002616,1.47e-20,46;UBERON:0000955,5.72e-20,47;UBERON:0006238,5.72e-20,47;UBERON:0010371,6.80e-20,73;UBERON:0004121,1.46e-19,95;UBERON:0000924,1.46e-19,95;UBERON:0006601,1.46e-19,95;UBERON:0003528,2.36e-17,29;UBERON:0002791,2.36e-17,29;UBERON:0001893,2.36e-17,29;UBERON:0003080,3.58e-16,40;UBERON:0002021,4.17e-16,10;UBERON:0000411,4.17e-16,10;UBERON:0001950,4.17e-16,10;UBERON:0003076,8.77e-16,12;UBERON:0003057,8.77e-16,12;UBERON:0002780,6.90e-15,39;UBERON:0001890,6.90e-15,39;UBERON:0006240,6.90e-15,39;UBERON:0010314,5.66e-14,92;UBERON:0003056,2.37e-13,49;UBERON:0000956,5.50e-13,21;UBERON:0001869,5.50e-13,21;UBERON:0000203,5.50e-13,21;UBERON:0002619,2.43e-12,17;UBERON:0002240,2.83e-12,6;UBERON:0005174,2.83e-12,6;UBERON:0001137,2.83e-12,6;UBERON:0001948,1.30e-10,5;UBERON:0002315,1.30e-10,5;UBERON:0000025,6.82e-09,114;UBERON:0002950,3.46e-08,4;UBERON:0001891,3.46e-08,4;UBERON:0009616,3.46e-08,4;UBERON:0010286,3.46e-08,4;UBERON:0004111,8.73e-08,122;UBERON:0004684,6.90e-07,3;UBERON:0002275,6.90e-07,3;UBERON:0002257,7.86e-07,3|phase1_expression=0,0,0,0.30246421130683,0,0,0,0,0.140788722151667,0,0,0,0,0,0,0,0,0,0,0,3.23164502574065,0.0992909512008853,0,0,0,0,0,0,0.190023419456374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.336093799142464,0,0,0,1.21389876515759,2.11596391708813,0.633831403506179,0,0,0,0,0,0,0,0.518448061542388,0.270011876663381,1.05162480675691,55.7019419587417,40.4189429941453,0.367472397644862,0.479227355091182,1.83843757322004,25.3266526298594,18.386976684267,21.3513081226178,0.263772575460388,1.18933936683133,0.52091337055676,23.7305549151174,5.6276261003168,9.0150966188318,26.8112012781038,32.3183715413964,8.01517617048792,0.075726193333184,0.0755715601067855,0,0,0,0.539703191637817,0,0,0.421333260395256,0,0,0,0,0,0,0,0,0,0,0.34255163915718,0,0,0.173485326766136,0,0,0,0.23517741427141,0,0,0,0,0,0,0,0,34.255353250351,45.2404886717063,0,0,0,0,16.7765516133401,15.5550204958333,0.753926112677186,3.65031072403781,3.3243009452943,9.55825004973976,7.13861557498134,0.101839363850316,0,0,0.210441855886474,0.390361328888111,0.229902104433473,0.180062129805349,0.753524089178575,0.340182495756639,0.2562274405697,0,1.03481348295606,0,0,0,0,0,0.348252166522167,0,0.59710280045548,0,0,0,0,0.469052119962192,0,0,0,0,0,0,0,0,0,0,0,0,0.134206418760372,1.89260953707715,0.514523061896422,0,0,0.639864751605702,0.464473343720877,0.128867461322093,0.201683524623343,0.22237804384487,0,0,0,0,0,0,0,0,0,0.189667900953082,0.228497025219458,0,0.407302655690628,0.193952487167626,0.420814919341911,0.126473074248515,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.568474235311454,0,0,0,0,0,0.195133647857799,0,0,0,0,0.172684981865896,0.144649058581512,0,0,0,0,17.0183625387059,16.6440594960929,0,0,0,0,0.215423397732799,0,0,0,0,0,0,0,0,0.35613120733451,0.977321756121456,0.164970122972535,0,0,0,0.188605079755898,0.295301892880773,0,0,0,0.356497378384721,0,0,0,0,0.720244376125241,0.129358683782755,0,0,0,0,0.304464949114599,0,0,0,0,0,0.0603129249281559,0,0,0,16.5028518789354,0,0,0,0,0,0,0,0,0,0,0.949007980743406,0.203319467126849,0.324016022465404,0,0.218362563746178,0,0,0,0,0,0,1.04661582230785,1.15820943319968,1.16670713006429,1.54991788173277,1.01373675294467,2.34714477291508,4.81756223922615,1.8874681996628,0.241584120826006,0,0,0.202725215290164,0.102710957164827,0,0,0,0.120195449519969,0.295379054349154,0.302899349844443,0.0762068066549998,0,0.0974578807397524,0,0.116876902181569,0,0,0,0,0,0,0,0,0,4.51801474093653,5.06357760157895,3.43737308063638,4.98374228796694,7.53590771747707,5.2877572817279,1.35004500046361,6.30449684513909,6.79713613476307,4.14208249401456,0.103787347584177,1.19707462020309,0.512200817262403,0.243106717068294,0.209613162627982,0.551530525350042,0,0.824140228955577,0.320919209591815,0.758091635291392,0.760437899670719,0.377252682772152,0.280924522409647,0.192075457214608,0.574354689556133,0,0.347652977834566,0,0.824171801606613,0.883193520806384,1.02860775715625,0,0.238436189947321,1.0174249164263,0.658765662907314,0.676916863133412,0.182927972872773,0.263069711437843,0.135804113845862,0,0.355905054372522,1.18205378850676,0,0.464810523557898,0.578719832943424,1.24905288968973,0.233931608445408,0.429742108096597,0.57386499620653,0.220591419119515,0.695603506861264|short_description=p2@Syt2}} | ||
|EntrezGene=20980 | |||
|HGNC= | |||
|MCL_coexpression_id=742 | |||
|UniProt=P46097 | |||
|association_with_transcript=-10bp_to_ENSMUST00000121990,uc007csk.1_5end | |||
|description=CAGE_peak_2_at_Syt2_5end | |||
|id=chr1:136605836..136605866,+ | |||
|ontology_enrichment_celltype=CL:0000117!6.56e-15!23;CL:0000337!6.56e-15!23;CL:0000540!3.70e-08!33;CL:0000047!3.70e-08!33;CL:0000031!3.70e-08!33;CL:0000404!3.70e-08!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,2.23e-17,23;CL:0000337,2.23e-17,23;CL:0000540,8.22e-11,33;CL:0000047,8.22e-11,33;CL:0000031,8.22e-11,33;CL:0000404,8.22e-11,33;CL:0000393,1.61e-08,39;CL:0000211,1.61e-08,39;CL:0002319,2.32e-07,43;CL:0000221,4.18e-07,44;CL:0000133,4.18e-07,44;CL:0002610,6.90e-07,3;CL:0002612,7.86e-07,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!5.89e-20!52;UBERON:0005068!5.89e-20!52;UBERON:0006241!5.89e-20!52;UBERON:0007135!5.89e-20!52;UBERON:0002020!1.01e-18!34;UBERON:0002346!1.05e-17!71;UBERON:0003075!1.05e-17!71;UBERON:0007284!1.05e-17!71;UBERON:0002616!1.63e-17!49;UBERON:0000955!8.17e-17!50;UBERON:0006238!8.17e-17!50;UBERON:0000033!4.64e-16!63;UBERON:0000073!1.22e-15!75;UBERON:0001016!1.22e-15!75;UBERON:0001017!1.50e-15!73;UBERON:0005743!1.50e-15!73;UBERON:0003056!4.79e-15!49;UBERON:0002791!1.65e-14!29;UBERON:0003528!1.65e-14!29;UBERON:0001893!1.65e-14!29;UBERON:0003080!1.67e-13!40;UBERON:0002780!8.87e-13!39;UBERON:0001890!8.87e-13!39;UBERON:0006240!8.87e-13!39;UBERON:0004121!6.07e-12!102;UBERON:0000924!6.07e-12!102;UBERON:0006601!6.07e-12!102;UBERON:0007811!4.96e-11!86;UBERON:0000956!5.57e-10!21;UBERON:0001869!5.57e-10!21;UBERON:0000203!5.57e-10!21;UBERON:0000153!4.61e-09!94;UBERON:0002619!2.62e-08!17;UBERON:0002021!2.87e-08!10;UBERON:0000411!2.87e-08!10;UBERON:0001950!2.87e-08!10;UBERON:0003076!2.05e-07!12;UBERON:0003057!2.05e-07!12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,6.32e-33,54;UBERON:0001049,1.22e-29,52;UBERON:0005068,1.22e-29,52;UBERON:0006241,1.22e-29,52;UBERON:0007135,1.22e-29,52;UBERON:0001017,7.12e-27,73;UBERON:0001016,6.77e-26,75;UBERON:0002020,2.62e-25,34;UBERON:0002346,6.05e-24,64;UBERON:0003075,6.05e-24,64;UBERON:0007284,6.05e-24,64;UBERON:0002616,1.47e-20,46;UBERON:0000955,5.72e-20,47;UBERON:0006238,5.72e-20,47;UBERON:0010371,6.80e-20,73;UBERON:0004121,1.46e-19,95;UBERON:0000924,1.46e-19,95;UBERON:0006601,1.46e-19,95;UBERON:0003528,2.36e-17,29;UBERON:0002791,2.36e-17,29;UBERON:0001893,2.36e-17,29;UBERON:0003080,3.58e-16,40;UBERON:0002021,4.17e-16,10;UBERON:0000411,4.17e-16,10;UBERON:0001950,4.17e-16,10;UBERON:0003076,8.77e-16,12;UBERON:0003057,8.77e-16,12;UBERON:0002780,6.90e-15,39;UBERON:0001890,6.90e-15,39;UBERON:0006240,6.90e-15,39;UBERON:0010314,5.66e-14,92;UBERON:0003056,2.37e-13,49;UBERON:0000956,5.50e-13,21;UBERON:0001869,5.50e-13,21;UBERON:0000203,5.50e-13,21;UBERON:0002619,2.43e-12,17;UBERON:0002240,2.83e-12,6;UBERON:0005174,2.83e-12,6;UBERON:0001137,2.83e-12,6;UBERON:0001948,1.30e-10,5;UBERON:0002315,1.30e-10,5;UBERON:0000025,6.82e-09,114;UBERON:0002950,3.46e-08,4;UBERON:0001891,3.46e-08,4;UBERON:0009616,3.46e-08,4;UBERON:0010286,3.46e-08,4;UBERON:0004111,8.73e-08,122;UBERON:0004684,6.90e-07,3;UBERON:0002275,6.90e-07,3;UBERON:0002257,7.86e-07,3 | |||
|phase1_expression=0,0,0,0.30246421130683,0,0,0,0,0.140788722151667,0,0,0,0,0,0,0,0,0,0,0,3.23164502574065,0.0992909512008853,0,0,0,0,0,0,0.190023419456374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.336093799142464,0,0,0,1.21389876515759,2.11596391708813,0.633831403506179,0,0,0,0,0,0,0,0.518448061542388,0.270011876663381,1.05162480675691,55.7019419587417,40.4189429941453,0.367472397644862,0.479227355091182,1.83843757322004,25.3266526298594,18.386976684267,21.3513081226178,0.263772575460388,1.18933936683133,0.52091337055676,23.7305549151174,5.6276261003168,9.0150966188318,26.8112012781038,32.3183715413964,8.01517617048792,0.075726193333184,0.0755715601067855,0,0,0,0.539703191637817,0,0,0.421333260395256,0,0,0,0,0,0,0,0,0,0,0.34255163915718,0,0,0.173485326766136,0,0,0,0.23517741427141,0,0,0,0,0,0,0,0,34.255353250351,45.2404886717063,0,0,0,0,16.7765516133401,15.5550204958333,0.753926112677186,3.65031072403781,3.3243009452943,9.55825004973976,7.13861557498134,0.101839363850316,0,0,0.210441855886474,0.390361328888111,0.229902104433473,0.180062129805349,0.753524089178575,0.340182495756639,0.2562274405697,0,1.03481348295606,0,0,0,0,0,0.348252166522167,0,0.59710280045548,0,0,0,0,0.469052119962192,0,0,0,0,0,0,0,0,0,0,0,0,0.134206418760372,1.89260953707715,0.514523061896422,0,0,0.639864751605702,0.464473343720877,0.128867461322093,0.201683524623343,0.22237804384487,0,0,0,0,0,0,0,0,0,0.189667900953082,0.228497025219458,0,0.407302655690628,0.193952487167626,0.420814919341911,0.126473074248515,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.568474235311454,0,0,0,0,0,0.195133647857799,0,0,0,0,0.172684981865896,0.144649058581512,0,0,0,0,17.0183625387059,16.6440594960929,0,0,0,0,0.215423397732799,0,0,0,0,0,0,0,0,0.35613120733451,0.977321756121456,0.164970122972535,0,0,0,0.188605079755898,0.295301892880773,0,0,0,0.356497378384721,0,0,0,0,0.720244376125241,0.129358683782755,0,0,0,0,0.304464949114599,0,0,0,0,0,0.0603129249281559,0,0,0,16.5028518789354,0,0,0,0,0,0,0,0,0,0,0.949007980743406,0.203319467126849,0.324016022465404,0,0.218362563746178,0,0,0,0,0,0,1.04661582230785,1.15820943319968,1.16670713006429,1.54991788173277,1.01373675294467,2.34714477291508,4.81756223922615,1.8874681996628,0.241584120826006,0,0,0.202725215290164,0.102710957164827,0,0,0,0.120195449519969,0.295379054349154,0.302899349844443,0.0762068066549998,0,0.0974578807397524,0,0.116876902181569,0,0,0,0,0,0,0,0,0,4.51801474093653,5.06357760157895,3.43737308063638,4.98374228796694,7.53590771747707,5.2877572817279,1.35004500046361,6.30449684513909,6.79713613476307,4.14208249401456,0.103787347584177,1.19707462020309,0.512200817262403,0.243106717068294,0.209613162627982,0.551530525350042,0,0.824140228955577,0.320919209591815,0.758091635291392,0.760437899670719,0.377252682772152,0.280924522409647,0.192075457214608,0.574354689556133,0,0.347652977834566,0,0.824171801606613,0.883193520806384,1.02860775715625,0,0.238436189947321,1.0174249164263,0.658765662907314,0.676916863133412,0.182927972872773,0.263069711437843,0.135804113845862,0,0.355905054372522,1.18205378850676,0,0.464810523557898,0.578719832943424,1.24905288968973,0.233931608445408,0.429742108096597,0.57386499620653,0.220591419119515,0.695603506861264 | |||
|short_description=p2@Syt2 | |||
}} |
Revision as of 18:58, 13 September 2013
Short description: | p2@Syt2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Syt2_5end |
Coexpression cluster: | MCL_coexpression_mm9:742 |
Association with transcript: | -10bp_to_ENSMUST00000121990, uc007csk.1_5end |
EntrezGene: | Syt2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 2.23e-17 | 23 |
neuroblast (sensu Vertebrata) | 2.23e-17 | 23 |
neuron | 8.22e-11 | 33 |
neuronal stem cell | 8.22e-11 | 33 |
neuroblast | 8.22e-11 | 33 |
electrically signaling cell | 8.22e-11 | 33 |
electrically responsive cell | 1.61e-08 | 39 |
electrically active cell | 1.61e-08 | 39 |
neural cell | 2.32e-07 | 43 |
ectodermal cell | 4.18e-07 | 44 |
neurectodermal cell | 4.18e-07 | 44 |
raphe nuclei neuron | 6.90e-07 | 3 |
neuron of the ventral spinal cord | 7.86e-07 | 3 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.