FFCP PHASE1:Hg19::chr6:41196684..41196696,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=285852|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=30807|TSSclassifier=N|UniProt=|association_with_transcript=0bp_to_ENST00000461240_5end|coexpression_cluster_id=C0|description=CAGE_peak_4_at_TREML4_5end|id=chr6:41196684..41196696,+|ontology_enrichment_celltype=CL:0002057!6.58e-97!42;CL:0000860!7.72e-90!45;CL:0000766!9.86e-69!76;CL:0002194!3.33e-64!63;CL:0000576!3.33e-64!63;CL:0000040!3.33e-64!63;CL:0000559!3.33e-64!63;CL:0002009!5.62e-62!65;CL:0000839!5.88e-57!70;CL:0000557!4.90e-56!71;CL:0000763!5.81e-46!112;CL:0000049!5.81e-46!112;CL:0000738!6.67e-43!140;CL:0002087!3.83e-40!119;CL:0000037!1.12e-34!172;CL:0000566!1.12e-34!172;CL:0000988!3.49e-32!182;CL:0002031!4.57e-32!124;CL:0002032!2.77e-31!165;CL:0000837!2.77e-31!165;CL:0000134!1.96e-13!358;CL:0002320!5.82e-13!365;CL:0000219!2.70e-11!390;CL:0000094!1.10e-10!8;CL:0000842!1.46e-10!3;CL:0000048!5.50e-10!430;CL:0000723!1.08e-09!436;CL:0000034!2.59e-09!444;CL:0002393!3.35e-09!9;CL:0002397!3.35e-09!9;CL:0000224!4.96e-08!4;CL:0000081!1.11e-07!11|ontology_enrichment_celltype_v019=CL:0000860;9.01e-110;33!CL:0002057;9.01e-110;33!CL:0000473;4.28e-77;39!CL:0000234;4.28e-77;39!CL:0000576;1.37e-53;48!CL:0000766;8.64e-29;69!CL:0000763;1.53e-17;100!CL:0002087;1.07e-15;104!CL:0000738;7.89e-09;136|ontology_enrichment_celltype_v019_2=CL:0000860,8.47e-106,42;CL:0002057,8.47e-106,42;CL:0000473,3.72e-92,48;CL:0000234,3.72e-92,48;CL:0002194,4.79e-73,59;CL:0000576,4.79e-73,59;CL:0000040,4.79e-73,59;CL:0000559,4.79e-73,59;CL:0002009,1.40e-70,61;CL:0000839,4.68e-65,66;CL:0000766,1.06e-64,72;CL:0000557,4.76e-64,67;CL:0000763,3.59e-42,108;CL:0000049,3.59e-42,108;CL:0002087,4.36e-36,115;CL:0002031,1.90e-34,120;CL:0000738,8.11e-33,136;CL:0002032,3.44e-27,161;CL:0000837,3.44e-27,161;CL:0000037,6.55e-26,168;CL:0000988,2.06e-24,177;CL:0000134,2.56e-10,354;CL:0002320,4.84e-10,361;CL:0000219,4.58e-09,386;CL:0000048,7.22e-08,427;CL:0000723,1.06e-07,433;CL:0000034,1.73e-07,441|ontology_enrichment_development_v019=CL:0002057;6.72e-78;42!CL:0000049;2.11e-12;108|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002371!8.89e-49!80;UBERON:0002390!1.45e-48!102;UBERON:0003061!1.45e-48!102;UBERON:0001474!8.97e-45!86;UBERON:0002193!2.26e-43!112;UBERON:0004765!7.92e-37!101;UBERON:0001434!7.92e-37!101;UBERON:0002405!2.86e-31!115;UBERON:0002204!4.71e-20!167;UBERON:0003081!8.92e-18!216;UBERON:0002384!2.57e-12!375|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002371,3.71e-56,76;UBERON:0001474,7.60e-52,82;UBERON:0004765,5.59e-47,90;UBERON:0002405,2.29e-45,93;UBERON:0002390,6.76e-43,98;UBERON:0003061,6.76e-43,98;UBERON:0001434,5.62e-42,100;UBERON:0002193,1.24e-38,108;UBERON:0002204,8.69e-24,167;UBERON:0003081,6.25e-19,203;UBERON:0000926,7.49e-11,315;UBERON:0004120,7.49e-11,315;UBERON:0006603,7.49e-11,315;UBERON:0002384,1.15e-09,371|phase1_expression=0.181678379270557,0,0.140954404095971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.786728553697808,0,0.154816123316076,0,0,0,0,0,0,1.10799081706375,0.200544447470142,0.434021741431704,0,0,0,0.145398238779565,0.377875943688809,0,1.62700325833979,2.05583944010913,0.309706370895104,7.19230980805376,2.0492856522328,2.83778675866302,9.99762474136194,3.22742341791913,2.70852973188684,0.941211697713023,0.818718450173537,1.12361742222542,3.36692281607993,4.17207735198922,1.27867425159808,1.9791078011203,1.19678194572979,0.426224750532694,7.54544020434318,5.10646702222026,3.73693349397345,2.51248665256743,1.0429658368404,1.08594422352558,6.05399502633369,4.41933163185078,1.26584954976354,0,0.425208599930087,0.209658645508376,0,0,0.16072558669708,0,0,0,0,0,0,0.426730222566507,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31780417436063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.721879481669586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.468008530278475,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144781306667579,0,0,0,0,0,0.128343036279748,0,0,0,0,0,0.749007023947182,0,0.828831026872071,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206768026122887,0.215714200818617,0.426910231213777,0,0,0,0,0,0,0.128139149255701,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.411362273086194,0,0.540031437238115,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23056390438806,0,0,0,0,0,0,0,0,0,0.19606253431774,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=285852 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30807 | |||
|TSSclassifier=N | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENST00000461240_5end | |||
|coexpression_cluster_id=C0 | |||
|description=CAGE_peak_4_at_TREML4_5end | |||
|id=chr6:41196684..41196696,+ | |||
|ontology_enrichment_celltype=CL:0002057!6.58e-97!42;CL:0000860!7.72e-90!45;CL:0000766!9.86e-69!76;CL:0002194!3.33e-64!63;CL:0000576!3.33e-64!63;CL:0000040!3.33e-64!63;CL:0000559!3.33e-64!63;CL:0002009!5.62e-62!65;CL:0000839!5.88e-57!70;CL:0000557!4.90e-56!71;CL:0000763!5.81e-46!112;CL:0000049!5.81e-46!112;CL:0000738!6.67e-43!140;CL:0002087!3.83e-40!119;CL:0000037!1.12e-34!172;CL:0000566!1.12e-34!172;CL:0000988!3.49e-32!182;CL:0002031!4.57e-32!124;CL:0002032!2.77e-31!165;CL:0000837!2.77e-31!165;CL:0000134!1.96e-13!358;CL:0002320!5.82e-13!365;CL:0000219!2.70e-11!390;CL:0000094!1.10e-10!8;CL:0000842!1.46e-10!3;CL:0000048!5.50e-10!430;CL:0000723!1.08e-09!436;CL:0000034!2.59e-09!444;CL:0002393!3.35e-09!9;CL:0002397!3.35e-09!9;CL:0000224!4.96e-08!4;CL:0000081!1.11e-07!11 | |||
|ontology_enrichment_celltype_v019=CL:0000860;9.01e-110;33!CL:0002057;9.01e-110;33!CL:0000473;4.28e-77;39!CL:0000234;4.28e-77;39!CL:0000576;1.37e-53;48!CL:0000766;8.64e-29;69!CL:0000763;1.53e-17;100!CL:0002087;1.07e-15;104!CL:0000738;7.89e-09;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,8.47e-106,42;CL:0002057,8.47e-106,42;CL:0000473,3.72e-92,48;CL:0000234,3.72e-92,48;CL:0002194,4.79e-73,59;CL:0000576,4.79e-73,59;CL:0000040,4.79e-73,59;CL:0000559,4.79e-73,59;CL:0002009,1.40e-70,61;CL:0000839,4.68e-65,66;CL:0000766,1.06e-64,72;CL:0000557,4.76e-64,67;CL:0000763,3.59e-42,108;CL:0000049,3.59e-42,108;CL:0002087,4.36e-36,115;CL:0002031,1.90e-34,120;CL:0000738,8.11e-33,136;CL:0002032,3.44e-27,161;CL:0000837,3.44e-27,161;CL:0000037,6.55e-26,168;CL:0000988,2.06e-24,177;CL:0000134,2.56e-10,354;CL:0002320,4.84e-10,361;CL:0000219,4.58e-09,386;CL:0000048,7.22e-08,427;CL:0000723,1.06e-07,433;CL:0000034,1.73e-07,441 | |||
|ontology_enrichment_development_v019=CL:0002057;6.72e-78;42!CL:0000049;2.11e-12;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!8.89e-49!80;UBERON:0002390!1.45e-48!102;UBERON:0003061!1.45e-48!102;UBERON:0001474!8.97e-45!86;UBERON:0002193!2.26e-43!112;UBERON:0004765!7.92e-37!101;UBERON:0001434!7.92e-37!101;UBERON:0002405!2.86e-31!115;UBERON:0002204!4.71e-20!167;UBERON:0003081!8.92e-18!216;UBERON:0002384!2.57e-12!375 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,3.71e-56,76;UBERON:0001474,7.60e-52,82;UBERON:0004765,5.59e-47,90;UBERON:0002405,2.29e-45,93;UBERON:0002390,6.76e-43,98;UBERON:0003061,6.76e-43,98;UBERON:0001434,5.62e-42,100;UBERON:0002193,1.24e-38,108;UBERON:0002204,8.69e-24,167;UBERON:0003081,6.25e-19,203;UBERON:0000926,7.49e-11,315;UBERON:0004120,7.49e-11,315;UBERON:0006603,7.49e-11,315;UBERON:0002384,1.15e-09,371 | |||
|phase1_expression=0.181678379270557,0,0.140954404095971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.786728553697808,0,0.154816123316076,0,0,0,0,0,0,1.10799081706375,0.200544447470142,0.434021741431704,0,0,0,0.145398238779565,0.377875943688809,0,1.62700325833979,2.05583944010913,0.309706370895104,7.19230980805376,2.0492856522328,2.83778675866302,9.99762474136194,3.22742341791913,2.70852973188684,0.941211697713023,0.818718450173537,1.12361742222542,3.36692281607993,4.17207735198922,1.27867425159808,1.9791078011203,1.19678194572979,0.426224750532694,7.54544020434318,5.10646702222026,3.73693349397345,2.51248665256743,1.0429658368404,1.08594422352558,6.05399502633369,4.41933163185078,1.26584954976354,0,0.425208599930087,0.209658645508376,0,0,0.16072558669708,0,0,0,0,0,0,0.426730222566507,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31780417436063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.721879481669586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.468008530278475,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144781306667579,0,0,0,0,0,0.128343036279748,0,0,0,0,0,0.749007023947182,0,0.828831026872071,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206768026122887,0.215714200818617,0.426910231213777,0,0,0,0,0,0,0.128139149255701,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.411362273086194,0,0.540031437238115,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23056390438806,0,0,0,0,0,0,0,0,0,0.19606253431774,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0801588202515337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.35857467866569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.308801447160972,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127762427639595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p4@TREML4 | |||
}} |
Revision as of 20:58, 13 September 2013
Short description: | p4@TREML4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_TREML4_5end |
Coexpression cluster: | C0_CD14_Eosinophils_Neutrophils_Basophils_CD34_immature_Peripheral |
Association with transcript: | 0bp_to_ENST00000461240_5end |
EntrezGene: | TREML4 |
HGNC: | 30807 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 8.47e-106 | 42 |
CD14-positive, CD16-negative classical monocyte | 8.47e-106 | 42 |
defensive cell | 3.72e-92 | 48 |
phagocyte | 3.72e-92 | 48 |
monopoietic cell | 4.79e-73 | 59 |
monocyte | 4.79e-73 | 59 |
monoblast | 4.79e-73 | 59 |
promonocyte | 4.79e-73 | 59 |
macrophage dendritic cell progenitor | 1.40e-70 | 61 |
myeloid lineage restricted progenitor cell | 4.68e-65 | 66 |
myeloid leukocyte | 1.06e-64 | 72 |
granulocyte monocyte progenitor cell | 4.76e-64 | 67 |
myeloid cell | 3.59e-42 | 108 |
common myeloid progenitor | 3.59e-42 | 108 |
nongranular leukocyte | 4.36e-36 | 115 |
hematopoietic lineage restricted progenitor cell | 1.90e-34 | 120 |
leukocyte | 8.11e-33 | 136 |
hematopoietic oligopotent progenitor cell | 3.44e-27 | 161 |
hematopoietic multipotent progenitor cell | 3.44e-27 | 161 |
hematopoietic stem cell | 6.55e-26 | 168 |
hematopoietic cell | 2.06e-24 | 177 |
mesenchymal cell | 2.56e-10 | 354 |
connective tissue cell | 4.84e-10 | 361 |
motile cell | 4.58e-09 | 386 |
multi fate stem cell | 7.22e-08 | 427 |
somatic stem cell | 1.06e-07 | 433 |
stem cell | 1.73e-07 | 441 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 3.71e-56 | 76 |
bone element | 7.60e-52 | 82 |
skeletal element | 5.59e-47 | 90 |
immune system | 2.29e-45 | 93 |
hematopoietic system | 6.76e-43 | 98 |
blood island | 6.76e-43 | 98 |
skeletal system | 5.62e-42 | 100 |
hemolymphoid system | 1.24e-38 | 108 |
musculoskeletal system | 8.69e-24 | 167 |
lateral plate mesoderm | 6.25e-19 | 203 |
mesoderm | 7.49e-11 | 315 |
mesoderm-derived structure | 7.49e-11 | 315 |
presumptive mesoderm | 7.49e-11 | 315 |
connective tissue | 1.15e-09 | 371 |
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