FFCP PHASE1:Mm9::chr4:107353346..107353375,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=56296|HGNC=|MCL_coexpression_id=3445|UniProt=|association_with_transcript=189bp_to_ENSMUST00000131508_5end|description=CAGE_peak_5_at_Dmrtb1_5end|id=chr4:107353346..107353375,-|ontology_enrichment_celltype=CL:0000117!6.93e-19!23;CL:0000337!6.93e-19!23;CL:0002319!2.74e-11!43;CL:0000540!3.42e-11!33;CL:0000047!3.42e-11!33;CL:0000031!3.42e-11!33;CL:0000404!3.42e-11!33;CL:0000221!7.24e-11!44;CL:0000133!7.24e-11!44;CL:0000055!1.04e-08!50;CL:0000393!1.52e-08!39;CL:0000211!1.52e-08!39|ontology_enrichment_celltype_v019_2=CL:0000117,5.39e-23,23;CL:0000337,5.39e-23,23;CL:0002613,2.22e-18,3;CL:0000120,2.02e-17,3;CL:0002319,3.00e-17,43;CL:0000221,8.01e-17,44;CL:0000133,8.01e-17,44;CL:0000540,1.16e-15,33;CL:0000047,1.16e-15,33;CL:0000031,1.16e-15,33;CL:0000404,1.16e-15,33;CL:0000393,4.64e-13,39;CL:0000211,4.64e-13,39;CL:0000878,1.56e-12,2;CL:0000129,1.56e-12,2;CL:0002321,5.60e-10,70;CL:0000723,2.76e-07,91;CL:0000048,2.76e-07,91;CL:0000034,9.96e-07,97|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!1.64e-17!75;UBERON:0001016!1.64e-17!75;UBERON:0001017!2.19e-17!73;UBERON:0005743!2.19e-17!73;UBERON:0004121!2.75e-16!102;UBERON:0000924!2.75e-16!102;UBERON:0006601!2.75e-16!102;UBERON:0000033!4.85e-14!63;UBERON:0002346!2.11e-13!71;UBERON:0003075!2.11e-13!71;UBERON:0007284!2.11e-13!71;UBERON:0001049!2.57e-13!52;UBERON:0005068!2.57e-13!52;UBERON:0006241!2.57e-13!52;UBERON:0007135!2.57e-13!52;UBERON:0003056!6.60e-13!49;UBERON:0002020!9.40e-13!34;UBERON:0000955!9.71e-12!50;UBERON:0006238!9.71e-12!50;UBERON:0002616!6.48e-11!49;UBERON:0003080!3.90e-09!40;UBERON:0002780!2.31e-08!39;UBERON:0001890!2.31e-08!39;UBERON:0006240!2.31e-08!39;UBERON:0002791!2.71e-08!29;UBERON:0003528!2.71e-08!29;UBERON:0001893!2.71e-08!29;UBERON:0002240!9.97e-08!6;UBERON:0005174!9.97e-08!6;UBERON:0001137!9.97e-08!6;UBERON:0007811!1.09e-07!86;UBERON:0001948!3.21e-07!5;UBERON:0002315!3.21e-07!5|ontology_enrichment_uberon_v019_2=UBERON:0002420,9.82e-12,8;UBERON:0007245,9.82e-12,8;UBERON:0010009,9.82e-12,8;UBERON:0010011,9.82e-12,8;UBERON:0000454,9.82e-12,8;UBERON:0001017,2.87e-11,73;UBERON:0000369,2.98e-11,5;UBERON:0002435,2.98e-11,5;UBERON:0000204,2.98e-11,5;UBERON:0010082,2.98e-11,5;UBERON:0001016,6.39e-11,75;UBERON:0004121,3.05e-08,95;UBERON:0000924,3.05e-08,95;UBERON:0006601,3.05e-08,95;UBERON:0002020,1.95e-07,34|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.680346321208558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.139986421625363,0,0,0,0,0,0,0,5.66486090406874,4.23192783417626,3.80298842103708,0,0.889294796111139,0,0,0,6.2916023208865,7.30014780110954,0,0.270011876663381,0.210324961351382,2.28520787523043,0.883474163806454,0.244981598429908,0.383381884072945,0,1.10115880999389,0.893811366596314,0.307213066512487,11.3422207447967,12.0763689555181,14.0646610050325,1.11673199600552,0,0.15279824777681,2.06240009831567,0.569486723196412,0.931997229126503,0,0.0755715601067855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.898743836428936,0,0.753926112677186,0.347648640384553,0.767146371990992,0,0.648965052271031,0,0,0,0,0.520481771850815,0,0.540186389416048,0.60281927134286,0.204109497453984,0.12811372028485,0.187403449119458,0.517406741478031,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.411618449517138,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160550589987792,0.234423373184406,0,0,0,0,0,0,0,0,0,0,0,0.963963949265421,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.36012218806262,0.129358683782755,0,0,0,0,0.304464949114599,0,0,0,0,0,0.0603129249281559,0,0,0,0.18542530201051,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.6369293868419,0,0,0,0,0,0,0,0,1.20792060413003,2.01621004380506,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.564751842617067,0.460325236507177,0,0.68741272937475,0,1.5107877947794,0,0.45032120322422,0,0,0.31136204275253,0.798049746802062,0.512200817262403,0.486213434136588,0.209613162627982,0.551530525350042,0,0,0,0.252697211763798,0,0.188626341386076,0.0936415074698824,0.192075457214608,0.459483751644906,0,0.115884325944855,0,0.412085900803307,0.294397840268795,0,0.354951612318675,0.238436189947321,0,0.188218760830661,0.0846146078916765,0.365855945745545,0,0.271608227691724,0,0,0.0985044823755635,0,0.154936841185966,0.192906610981141,0.499621155875892,0,0.644613162144895,0.191288332068843,0,0|short_description=p5@Dmrtb1}} | ||
|EntrezGene=56296 | |||
|HGNC= | |||
|MCL_coexpression_id=3445 | |||
|UniProt= | |||
|association_with_transcript=189bp_to_ENSMUST00000131508_5end | |||
|description=CAGE_peak_5_at_Dmrtb1_5end | |||
|id=chr4:107353346..107353375,- | |||
|ontology_enrichment_celltype=CL:0000117!6.93e-19!23;CL:0000337!6.93e-19!23;CL:0002319!2.74e-11!43;CL:0000540!3.42e-11!33;CL:0000047!3.42e-11!33;CL:0000031!3.42e-11!33;CL:0000404!3.42e-11!33;CL:0000221!7.24e-11!44;CL:0000133!7.24e-11!44;CL:0000055!1.04e-08!50;CL:0000393!1.52e-08!39;CL:0000211!1.52e-08!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,5.39e-23,23;CL:0000337,5.39e-23,23;CL:0002613,2.22e-18,3;CL:0000120,2.02e-17,3;CL:0002319,3.00e-17,43;CL:0000221,8.01e-17,44;CL:0000133,8.01e-17,44;CL:0000540,1.16e-15,33;CL:0000047,1.16e-15,33;CL:0000031,1.16e-15,33;CL:0000404,1.16e-15,33;CL:0000393,4.64e-13,39;CL:0000211,4.64e-13,39;CL:0000878,1.56e-12,2;CL:0000129,1.56e-12,2;CL:0002321,5.60e-10,70;CL:0000723,2.76e-07,91;CL:0000048,2.76e-07,91;CL:0000034,9.96e-07,97 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!1.64e-17!75;UBERON:0001016!1.64e-17!75;UBERON:0001017!2.19e-17!73;UBERON:0005743!2.19e-17!73;UBERON:0004121!2.75e-16!102;UBERON:0000924!2.75e-16!102;UBERON:0006601!2.75e-16!102;UBERON:0000033!4.85e-14!63;UBERON:0002346!2.11e-13!71;UBERON:0003075!2.11e-13!71;UBERON:0007284!2.11e-13!71;UBERON:0001049!2.57e-13!52;UBERON:0005068!2.57e-13!52;UBERON:0006241!2.57e-13!52;UBERON:0007135!2.57e-13!52;UBERON:0003056!6.60e-13!49;UBERON:0002020!9.40e-13!34;UBERON:0000955!9.71e-12!50;UBERON:0006238!9.71e-12!50;UBERON:0002616!6.48e-11!49;UBERON:0003080!3.90e-09!40;UBERON:0002780!2.31e-08!39;UBERON:0001890!2.31e-08!39;UBERON:0006240!2.31e-08!39;UBERON:0002791!2.71e-08!29;UBERON:0003528!2.71e-08!29;UBERON:0001893!2.71e-08!29;UBERON:0002240!9.97e-08!6;UBERON:0005174!9.97e-08!6;UBERON:0001137!9.97e-08!6;UBERON:0007811!1.09e-07!86;UBERON:0001948!3.21e-07!5;UBERON:0002315!3.21e-07!5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002420,9.82e-12,8;UBERON:0007245,9.82e-12,8;UBERON:0010009,9.82e-12,8;UBERON:0010011,9.82e-12,8;UBERON:0000454,9.82e-12,8;UBERON:0001017,2.87e-11,73;UBERON:0000369,2.98e-11,5;UBERON:0002435,2.98e-11,5;UBERON:0000204,2.98e-11,5;UBERON:0010082,2.98e-11,5;UBERON:0001016,6.39e-11,75;UBERON:0004121,3.05e-08,95;UBERON:0000924,3.05e-08,95;UBERON:0006601,3.05e-08,95;UBERON:0002020,1.95e-07,34 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.680346321208558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.139986421625363,0,0,0,0,0,0,0,5.66486090406874,4.23192783417626,3.80298842103708,0,0.889294796111139,0,0,0,6.2916023208865,7.30014780110954,0,0.270011876663381,0.210324961351382,2.28520787523043,0.883474163806454,0.244981598429908,0.383381884072945,0,1.10115880999389,0.893811366596314,0.307213066512487,11.3422207447967,12.0763689555181,14.0646610050325,1.11673199600552,0,0.15279824777681,2.06240009831567,0.569486723196412,0.931997229126503,0,0.0755715601067855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.898743836428936,0,0.753926112677186,0.347648640384553,0.767146371990992,0,0.648965052271031,0,0,0,0,0.520481771850815,0,0.540186389416048,0.60281927134286,0.204109497453984,0.12811372028485,0.187403449119458,0.517406741478031,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.411618449517138,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160550589987792,0.234423373184406,0,0,0,0,0,0,0,0,0,0,0,0.963963949265421,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.36012218806262,0.129358683782755,0,0,0,0,0.304464949114599,0,0,0,0,0,0.0603129249281559,0,0,0,0.18542530201051,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.6369293868419,0,0,0,0,0,0,0,0,1.20792060413003,2.01621004380506,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.564751842617067,0.460325236507177,0,0.68741272937475,0,1.5107877947794,0,0.45032120322422,0,0,0.31136204275253,0.798049746802062,0.512200817262403,0.486213434136588,0.209613162627982,0.551530525350042,0,0,0,0.252697211763798,0,0.188626341386076,0.0936415074698824,0.192075457214608,0.459483751644906,0,0.115884325944855,0,0.412085900803307,0.294397840268795,0,0.354951612318675,0.238436189947321,0,0.188218760830661,0.0846146078916765,0.365855945745545,0,0.271608227691724,0,0,0.0985044823755635,0,0.154936841185966,0.192906610981141,0.499621155875892,0,0.644613162144895,0.191288332068843,0,0 | |||
|short_description=p5@Dmrtb1 | |||
}} |
Revision as of 03:22, 14 September 2013
Short description: | p5@Dmrtb1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_Dmrtb1_5end |
Coexpression cluster: | MCL_coexpression_mm9:3445 |
Association with transcript: | 189bp_to_ENSMUST00000131508_5end |
EntrezGene: | Dmrtb1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 5.39e-23 | 23 |
neuroblast (sensu Vertebrata) | 5.39e-23 | 23 |
striatum neuron | 2.22e-18 | 3 |
granule cell | 2.02e-17 | 3 |
neural cell | 3.00e-17 | 43 |
ectodermal cell | 8.01e-17 | 44 |
neurectodermal cell | 8.01e-17 | 44 |
neuron | 1.16e-15 | 33 |
neuronal stem cell | 1.16e-15 | 33 |
neuroblast | 1.16e-15 | 33 |
electrically signaling cell | 1.16e-15 | 33 |
electrically responsive cell | 4.64e-13 | 39 |
electrically active cell | 4.64e-13 | 39 |
central nervous system macrophage | 1.56e-12 | 2 |
microglial cell | 1.56e-12 | 2 |
embryonic cell | 5.60e-10 | 70 |
somatic stem cell | 2.76e-07 | 91 |
multi fate stem cell | 2.76e-07 | 91 |
stem cell | 9.96e-07 | 97 |
Ontology term | p-value | n |
---|---|---|
basal ganglion | 9.82e-12 | 8 |
nuclear complex of neuraxis | 9.82e-12 | 8 |
aggregate regional part of brain | 9.82e-12 | 8 |
collection of basal ganglia | 9.82e-12 | 8 |
cerebral subcortex | 9.82e-12 | 8 |
central nervous system | 2.87e-11 | 73 |
corpus striatum | 2.98e-11 | 5 |
striatum | 2.98e-11 | 5 |
ventral part of telencephalon | 2.98e-11 | 5 |
future corpus striatum | 2.98e-11 | 5 |
nervous system | 6.39e-11 | 75 |
ectoderm-derived structure | 3.05e-08 | 95 |
ectoderm | 3.05e-08 | 95 |
presumptive ectoderm | 3.05e-08 | 95 |
gray matter | 1.95e-07 | 34 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.