FFCP PHASE1:Hg19::chr8:4852640..4852647,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=64478|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=14026|TSSclassifier=S|UniProt=E5RIG2|association_with_transcript=-146bp_to_ENST00000520002_5end|description=CAGE_peak_19_at_CSMD1_5end|id=chr8:4852640..4852647,-|ontology_enrichment_celltype=CL:0002322!2.05e-07!5|ontology_enrichment_celltype_v019=CL:0000222;5.97e-17;1|ontology_enrichment_celltype_v019_2=|ontology_enrichment_development_v019=UBERON:0006601;1.53e-07;82|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:171;4.07e-07;10|ontology_enrichment_disease_v019_2=DOID:171,3.77e-07,10|ontology_enrichment_uberon=UBERON:0002020!1.88e-62!34;UBERON:0003528!1.88e-62!34;UBERON:0001869!3.01e-61!32;UBERON:0002619!5.00e-61!22;UBERON:0001950!3.03e-60!20;UBERON:0001893!2.08e-57!34;UBERON:0002791!5.62e-54!33;UBERON:0000956!2.02e-53!25;UBERON:0000203!2.02e-53!25;UBERON:0001049!2.43e-52!57;UBERON:0005068!2.43e-52!57;UBERON:0006241!2.43e-52!57;UBERON:0007135!2.43e-52!57;UBERON:0002780!5.40e-51!41;UBERON:0001890!5.40e-51!41;UBERON:0006240!5.40e-51!41;UBERON:0003080!1.15e-49!42;UBERON:0002616!9.53e-47!59;UBERON:0001017!4.47e-45!82;UBERON:0005743!1.15e-42!86;UBERON:0000955!1.85e-41!69;UBERON:0006238!1.85e-41!69;UBERON:0000073!1.60e-40!94;UBERON:0001016!1.60e-40!94;UBERON:0002346!1.57e-38!90;UBERON:0003075!5.74e-35!86;UBERON:0007284!5.74e-35!86;UBERON:0003056!1.47e-32!61;UBERON:0007023!2.82e-30!115;UBERON:0000033!3.51e-22!123;UBERON:0000924!9.68e-22!173;UBERON:0006601!9.68e-22!173;UBERON:0002021!5.60e-21!5;UBERON:0001872!7.76e-21!5;UBERON:0000153!7.87e-21!129;UBERON:0007811!7.87e-21!129;UBERON:0004121!2.58e-19!169;UBERON:0001871!2.57e-18!7;UBERON:0000200!3.35e-17!6;UBERON:0000349!1.33e-13!5;UBERON:0002771!2.54e-13!3;UBERON:0000025!1.32e-12!194;UBERON:0002420!2.45e-11!9;UBERON:0007245!2.45e-11!9;UBERON:0010009!2.45e-11!9;UBERON:0010011!2.45e-11!9;UBERON:0000454!2.45e-11!9;UBERON:0002308!4.12e-11!9;UBERON:0000125!4.12e-11!9;UBERON:0000369!6.49e-10!4;UBERON:0002435!6.49e-10!4;UBERON:0000204!6.49e-10!4;UBERON:0010082!6.49e-10!4;UBERON:0001876!2.63e-09!2;UBERON:0002148!6.96e-09!2;UBERON:0009662!6.96e-09!2;UBERON:0004111!8.93e-09!241;UBERON:0000064!1.28e-08!219;UBERON:0000477!5.38e-07!286|ontology_enrichment_uberon_v019=UBERON:0001950;1.42e-57;20!UBERON:0002619;1.58e-52;22!UBERON:0000956;2.08e-46;25!UBERON:0000203;2.08e-46;25!UBERON:0001869;5.28e-44;32!UBERON:0002791;2.51e-42;32!UBERON:0001893;7.12e-39;34!UBERON:0003528;2.94e-36;34!UBERON:0002020;2.94e-36;34!UBERON:0001872;6.67e-28;5!UBERON:0002021;6.67e-28;5!UBERON:0002780;8.68e-25;41!UBERON:0001890;8.68e-25;41!UBERON:0001882;1.53e-16;1!UBERON:0005403;1.53e-16;1!UBERON:0002346;2.01e-16;4!UBERON:0000923;2.01e-16;4!UBERON:0010316;2.01e-16;4!UBERON:0005291;2.01e-16;4!UBERON:0000073;1.13e-15;53!UBERON:0002616;1.13e-15;53!UBERON:0002050;2.44e-13;5!UBERON:0005423;2.44e-13;5!UBERON:0000349;2.68e-13;5!UBERON:0000200;4.15e-11;6!UBERON:0000955;9.85e-11;68!UBERON:0001871;9.11e-10;6!UBERON:0001876;3.86e-09;2!UBERON:0001017;5.26e-09;75!UBERON:0002771;6.17e-09;2!UBERON:0002702;6.17e-09;2!UBERON:0001016;5.97e-08;83!UBERON:0002420;8.59e-08;9!UBERON:0007245;8.59e-08;9!UBERON:0010009;8.59e-08;9!UBERON:0010011;8.59e-08;9!UBERON:0000454;8.59e-08;9|ontology_enrichment_uberon_v019_2=UBERON:0001950,1.29e-57,20;UBERON:0002619,1.45e-52,22;UBERON:0000956,1.93e-46,25;UBERON:0000203,1.93e-46,25;UBERON:0002791,5.98e-45,32;UBERON:0001869,5.98e-45,32;UBERON:0003528,2.41e-42,34;UBERON:0002020,2.41e-42,34;UBERON:0001893,2.41e-42,34;UBERON:0002780,3.58e-35,41;UBERON:0001890,3.58e-35,41;UBERON:0003080,3.58e-35,41;UBERON:0006240,3.58e-35,41;UBERON:0001872,3.04e-28,5;UBERON:0002021,1.21e-27,5;UBERON:0000073,3.41e-27,53;UBERON:0002616,3.41e-27,53;UBERON:0001049,1.01e-25,56;UBERON:0005068,1.01e-25,56;UBERON:0006241,1.01e-25,56;UBERON:0007135,1.01e-25,56;UBERON:0002346,3.67e-24,86;UBERON:0003056,1.39e-23,61;UBERON:0000955,8.51e-21,68;UBERON:0006238,8.51e-21,68;UBERON:0001017,2.09e-17,81;UBERON:0003075,2.09e-17,82;UBERON:0007284,2.09e-17,82;UBERON:0001882,2.63e-16,1;UBERON:0005403,2.63e-16,1;UBERON:0001016,1.28e-15,89;UBERON:0010371,1.43e-13,104;UBERON:0000349,3.23e-13,5;UBERON:0004121,1.49e-11,171;UBERON:0000924,1.49e-11,171;UBERON:0006601,1.49e-11,171;UBERON:0000200,4.37e-11,6;UBERON:0010314,1.63e-10,132;UBERON:0001871,8.35e-10,6;UBERON:0001876,3.71e-09,2;UBERON:0002771,5.49e-09,2;UBERON:0002702,7.49e-09,2;UBERON:0002420,9.52e-08,9;UBERON:0007245,9.52e-08,9;UBERON:0010009,9.52e-08,9;UBERON:0010011,9.52e-08,9;UBERON:0000454,9.52e-08,9;UBERON:0000025,6.36e-07,192|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=64478 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=14026 | |||
|TSSclassifier=S | |||
|UniProt=E5RIG2 | |||
|association_with_transcript=-146bp_to_ENST00000520002_5end | |||
|description=CAGE_peak_19_at_CSMD1_5end | |||
|id=chr8:4852640..4852647,- | |||
|ontology_enrichment_celltype=CL:0002322!2.05e-07!5 | |||
|ontology_enrichment_celltype_v019=CL:0000222;5.97e-17;1 | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006601;1.53e-07;82 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:171;4.07e-07;10 | |||
|ontology_enrichment_disease_v019_2=DOID:171,3.77e-07,10 | |||
|ontology_enrichment_uberon=UBERON:0002020!1.88e-62!34;UBERON:0003528!1.88e-62!34;UBERON:0001869!3.01e-61!32;UBERON:0002619!5.00e-61!22;UBERON:0001950!3.03e-60!20;UBERON:0001893!2.08e-57!34;UBERON:0002791!5.62e-54!33;UBERON:0000956!2.02e-53!25;UBERON:0000203!2.02e-53!25;UBERON:0001049!2.43e-52!57;UBERON:0005068!2.43e-52!57;UBERON:0006241!2.43e-52!57;UBERON:0007135!2.43e-52!57;UBERON:0002780!5.40e-51!41;UBERON:0001890!5.40e-51!41;UBERON:0006240!5.40e-51!41;UBERON:0003080!1.15e-49!42;UBERON:0002616!9.53e-47!59;UBERON:0001017!4.47e-45!82;UBERON:0005743!1.15e-42!86;UBERON:0000955!1.85e-41!69;UBERON:0006238!1.85e-41!69;UBERON:0000073!1.60e-40!94;UBERON:0001016!1.60e-40!94;UBERON:0002346!1.57e-38!90;UBERON:0003075!5.74e-35!86;UBERON:0007284!5.74e-35!86;UBERON:0003056!1.47e-32!61;UBERON:0007023!2.82e-30!115;UBERON:0000033!3.51e-22!123;UBERON:0000924!9.68e-22!173;UBERON:0006601!9.68e-22!173;UBERON:0002021!5.60e-21!5;UBERON:0001872!7.76e-21!5;UBERON:0000153!7.87e-21!129;UBERON:0007811!7.87e-21!129;UBERON:0004121!2.58e-19!169;UBERON:0001871!2.57e-18!7;UBERON:0000200!3.35e-17!6;UBERON:0000349!1.33e-13!5;UBERON:0002771!2.54e-13!3;UBERON:0000025!1.32e-12!194;UBERON:0002420!2.45e-11!9;UBERON:0007245!2.45e-11!9;UBERON:0010009!2.45e-11!9;UBERON:0010011!2.45e-11!9;UBERON:0000454!2.45e-11!9;UBERON:0002308!4.12e-11!9;UBERON:0000125!4.12e-11!9;UBERON:0000369!6.49e-10!4;UBERON:0002435!6.49e-10!4;UBERON:0000204!6.49e-10!4;UBERON:0010082!6.49e-10!4;UBERON:0001876!2.63e-09!2;UBERON:0002148!6.96e-09!2;UBERON:0009662!6.96e-09!2;UBERON:0004111!8.93e-09!241;UBERON:0000064!1.28e-08!219;UBERON:0000477!5.38e-07!286 | |||
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|short_description=p19@CSMD1 | |||
}} |
Revision as of 05:26, 14 September 2013
Short description: | p19@CSMD1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_19_at_CSMD1_5end |
Coexpression cluster: | NA |
Association with transcript: | -146bp_to_ENST00000520002_5end |
EntrezGene: | CSMD1 |
HGNC: | 14026 |
UniProt: | E5RIG2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuroectodermal tumor | 3.77e-07 | 10 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.