FFCP PHASE1:Mm9::chr5:65884139..65884160,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=68552|HGNC=|MCL_coexpression_id=3|UniProt=|association_with_transcript=-19bp_to_ENSMUST00000144562_5end|description=CAGE_peak_4_at_1110003E01Rik_5end|id=chr5:65884139..65884160,-|ontology_enrichment_celltype=CL:0000117!4.35e-11!23;CL:0000337!4.35e-11!23;CL:0000221!1.80e-08!44;CL:0000133!1.80e-08!44;CL:0002319!2.01e-08!43;CL:0000055!8.01e-08!50;CL:0000540!2.40e-07!33;CL:0000047!2.40e-07!33;CL:0000031!2.40e-07!33;CL:0000404!2.40e-07!33;CL:0000723!5.17e-07!91;CL:0000048!5.17e-07!91|ontology_enrichment_celltype_v019_2=CL:0000117,4.35e-11,23;CL:0000337,4.35e-11,23;CL:0000221,1.80e-08,44;CL:0000133,1.80e-08,44;CL:0002319,2.01e-08,43;CL:0000540,2.40e-07,33;CL:0000047,2.40e-07,33;CL:0000031,2.40e-07,33;CL:0000404,2.40e-07,33;CL:0000723,5.05e-07,91;CL:0000048,5.05e-07,91|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!5.80e-17!73;UBERON:0005743!5.80e-17!73;UBERON:0002020!1.26e-16!34;UBERON:0001049!1.40e-16!52;UBERON:0005068!1.40e-16!52;UBERON:0006241!1.40e-16!52;UBERON:0007135!1.40e-16!52;UBERON:0000955!1.41e-15!50;UBERON:0006238!1.41e-15!50;UBERON:0000073!2.10e-15!75;UBERON:0001016!2.10e-15!75;UBERON:0002616!4.70e-15!49;UBERON:0002791!1.20e-14!29;UBERON:0003528!1.20e-14!29;UBERON:0001893!1.20e-14!29;UBERON:0000033!2.68e-13!63;UBERON:0003080!5.30e-13!40;UBERON:0002780!7.79e-13!39;UBERON:0001890!7.79e-13!39;UBERON:0006240!7.79e-13!39;UBERON:0000956!6.72e-11!21;UBERON:0001869!6.72e-11!21;UBERON:0000203!6.72e-11!21;UBERON:0002346!1.68e-10!71;UBERON:0003075!1.68e-10!71;UBERON:0007284!1.68e-10!71;UBERON:0007811!4.04e-10!86;UBERON:0003056!4.32e-10!49;UBERON:0004121!6.12e-10!102;UBERON:0000924!6.12e-10!102;UBERON:0006601!6.12e-10!102;UBERON:0000153!3.37e-09!94;UBERON:0002619!4.66e-09!17|ontology_enrichment_uberon_v019_2=UBERON:0000073,3.89e-17,54;UBERON:0001017,5.79e-17,73;UBERON:0002020,1.25e-16,34;UBERON:0001049,1.40e-16,52;UBERON:0005068,1.40e-16,52;UBERON:0006241,1.40e-16,52;UBERON:0007135,1.40e-16,52;UBERON:0001016,2.10e-15,75;UBERON:0003528,1.20e-14,29;UBERON:0002791,1.20e-14,29;UBERON:0001893,1.20e-14,29;UBERON:0000955,1.49e-14,47;UBERON:0006238,1.49e-14,47;UBERON:0002616,4.88e-14,46;UBERON:0002346,3.94e-13,64;UBERON:0003075,3.94e-13,64;UBERON:0007284,3.94e-13,64;UBERON:0003080,5.30e-13,40;UBERON:0002780,7.78e-13,39;UBERON:0001890,7.78e-13,39;UBERON:0006240,7.78e-13,39;UBERON:0004121,7.10e-12,95;UBERON:0000924,7.10e-12,95;UBERON:0006601,7.10e-12,95;UBERON:0000956,6.71e-11,21;UBERON:0001869,6.71e-11,21;UBERON:0000203,6.71e-11,21;UBERON:0010371,1.21e-10,73;UBERON:0003056,4.32e-10,49;UBERON:0002619,4.65e-09,17;UBERON:0010314,2.81e-07,92|phase1_expression=3.68342348341026,3.83872948403297,5.91499011206397,4.23449895829562,2.50447864973174,3.52546471014969,2.10251376535973,6.45616617207881,2.81577444303333,3.27690336850791,1.88339765048055,0.8774937489487,3.59521532855532,4.89554253546385,1.66554880907831,2.63217847606774,0,13.0916798623669,10.6949258212476,11.8829102503448,3.82694805679814,2.78014663362479,4.70159620450084,3.19984845586813,4.35877634027623,4.59385571292016,3.01533397311352,3.44753972297422,3.42042155021473,4.28451220591882,5.32153225572731,1.90509202037889,0,0,3.75507105676657,3.98963148860382,3.47087905646027,26.7860243671621,23.440060335714,28.2702821745851,32.9409633297368,23.9065919735456,34.4712350652119,2.89562681343828,3.24406179902447,4.40512205188036,12.5182615095686,6.97680500417429,9.88587822305123,12.4435135407541,6.99932108126813,2.87505128729943,14.9326519391385,3.62681071005672,3.36093799142464,3.8588915405392,4.58453503902011,2.57836046138721,6.67644320836673,8.46385566835253,5.70448263155561,6.77689064138264,3.55717918444456,8.99899717281399,7.9109309005358,6.3943210345149,7.19040265244171,4.2264013585371,7.05089363697648,7.56033254657468,8.2026734927039,6.56997264128748,6.40518768759679,8.81933754347669,9.4887016308054,16.5459381589804,6.60695285996332,5.61824287574826,5.37622866396852,8.44072241473241,10.9785172322892,6.77187381723788,6.42120897703176,5.6276261003168,6.26472815884921,5.59794312399969,6.40672563595963,7.08317894136142,1.74170244666323,1.51143120213571,2.31891590961342,4.30211938490693,4.0798280022465,4.31762553310254,5.19821133958135,2.24013443548668,3.08977724289854,2.38602451609281,2.85764605063156,4.94675404314476,4.22530259330042,1.28326477414318,0,0,6.27824018932521,5.57391704045217,5.56076889516262,2.96878087269556,3.6251303710604,3.85949561568544,1.38788261412909,1.21786191324856,1.15307748628029,3.76806601381556,3.29248379979973,3.26733137457156,3.95511948374998,3.32578520915797,4.42305275974937,4.36770494858005,5.07935492458905,6.30337829075789,11.1835056730873,2.92780797011547,3.97948742945565,1.27728527604296,4.19352935770721,6.59893004092748,5.20987930999565,4.79330046095433,7.77751024791665,10.3036568732549,6.25767552692195,4.34716277461562,5.194701113989,6.00292673350703,2.54598409625791,6.59356944233493,9.35074206204597,14.3100462002802,1.43132487258974,2.5289231487682,3.4211804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| ||
|EntrezGene=68552 | |||
|HGNC= | |||
|MCL_coexpression_id=3 | |||
|UniProt= | |||
|association_with_transcript=-19bp_to_ENSMUST00000144562_5end | |||
|description=CAGE_peak_4_at_1110003E01Rik_5end | |||
|id=chr5:65884139..65884160,- | |||
|ontology_enrichment_celltype=CL:0000117!4.35e-11!23;CL:0000337!4.35e-11!23;CL:0000221!1.80e-08!44;CL:0000133!1.80e-08!44;CL:0002319!2.01e-08!43;CL:0000055!8.01e-08!50;CL:0000540!2.40e-07!33;CL:0000047!2.40e-07!33;CL:0000031!2.40e-07!33;CL:0000404!2.40e-07!33;CL:0000723!5.17e-07!91;CL:0000048!5.17e-07!91 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,4.35e-11,23;CL:0000337,4.35e-11,23;CL:0000221,1.80e-08,44;CL:0000133,1.80e-08,44;CL:0002319,2.01e-08,43;CL:0000540,2.40e-07,33;CL:0000047,2.40e-07,33;CL:0000031,2.40e-07,33;CL:0000404,2.40e-07,33;CL:0000723,5.05e-07,91;CL:0000048,5.05e-07,91 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!5.80e-17!73;UBERON:0005743!5.80e-17!73;UBERON:0002020!1.26e-16!34;UBERON:0001049!1.40e-16!52;UBERON:0005068!1.40e-16!52;UBERON:0006241!1.40e-16!52;UBERON:0007135!1.40e-16!52;UBERON:0000955!1.41e-15!50;UBERON:0006238!1.41e-15!50;UBERON:0000073!2.10e-15!75;UBERON:0001016!2.10e-15!75;UBERON:0002616!4.70e-15!49;UBERON:0002791!1.20e-14!29;UBERON:0003528!1.20e-14!29;UBERON:0001893!1.20e-14!29;UBERON:0000033!2.68e-13!63;UBERON:0003080!5.30e-13!40;UBERON:0002780!7.79e-13!39;UBERON:0001890!7.79e-13!39;UBERON:0006240!7.79e-13!39;UBERON:0000956!6.72e-11!21;UBERON:0001869!6.72e-11!21;UBERON:0000203!6.72e-11!21;UBERON:0002346!1.68e-10!71;UBERON:0003075!1.68e-10!71;UBERON:0007284!1.68e-10!71;UBERON:0007811!4.04e-10!86;UBERON:0003056!4.32e-10!49;UBERON:0004121!6.12e-10!102;UBERON:0000924!6.12e-10!102;UBERON:0006601!6.12e-10!102;UBERON:0000153!3.37e-09!94;UBERON:0002619!4.66e-09!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,3.89e-17,54;UBERON:0001017,5.79e-17,73;UBERON:0002020,1.25e-16,34;UBERON:0001049,1.40e-16,52;UBERON:0005068,1.40e-16,52;UBERON:0006241,1.40e-16,52;UBERON:0007135,1.40e-16,52;UBERON:0001016,2.10e-15,75;UBERON:0003528,1.20e-14,29;UBERON:0002791,1.20e-14,29;UBERON:0001893,1.20e-14,29;UBERON:0000955,1.49e-14,47;UBERON:0006238,1.49e-14,47;UBERON:0002616,4.88e-14,46;UBERON:0002346,3.94e-13,64;UBERON:0003075,3.94e-13,64;UBERON:0007284,3.94e-13,64;UBERON:0003080,5.30e-13,40;UBERON:0002780,7.78e-13,39;UBERON:0001890,7.78e-13,39;UBERON:0006240,7.78e-13,39;UBERON:0004121,7.10e-12,95;UBERON:0000924,7.10e-12,95;UBERON:0006601,7.10e-12,95;UBERON:0000956,6.71e-11,21;UBERON:0001869,6.71e-11,21;UBERON:0000203,6.71e-11,21;UBERON:0010371,1.21e-10,73;UBERON:0003056,4.32e-10,49;UBERON:0002619,4.65e-09,17;UBERON:0010314,2.81e-07,92 | |||
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| |||
|short_description=p4@1110003E01Rik | |||
}} |
Revision as of 07:51, 14 September 2013
Short description: | p4@1110003E01Rik |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_1110003E01Rik_5end |
Coexpression cluster: | MCL_coexpression_mm9:3 |
Association with transcript: | -19bp_to_ENSMUST00000144562_5end |
EntrezGene: | 1110003E01Rik |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 4.35e-11 | 23 |
neuroblast (sensu Vertebrata) | 4.35e-11 | 23 |
ectodermal cell | 1.80e-08 | 44 |
neurectodermal cell | 1.80e-08 | 44 |
neural cell | 2.01e-08 | 43 |
neuron | 2.40e-07 | 33 |
neuronal stem cell | 2.40e-07 | 33 |
neuroblast | 2.40e-07 | 33 |
electrically signaling cell | 2.40e-07 | 33 |
somatic stem cell | 5.05e-07 | 91 |
multi fate stem cell | 5.05e-07 | 91 |
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 3.89e-17 | 54 |
central nervous system | 5.79e-17 | 73 |
gray matter | 1.25e-16 | 34 |
neural tube | 1.40e-16 | 52 |
neural rod | 1.40e-16 | 52 |
future spinal cord | 1.40e-16 | 52 |
neural keel | 1.40e-16 | 52 |
nervous system | 2.10e-15 | 75 |
brain grey matter | 1.20e-14 | 29 |
regional part of telencephalon | 1.20e-14 | 29 |
telencephalon | 1.20e-14 | 29 |
brain | 1.49e-14 | 47 |
future brain | 1.49e-14 | 47 |
regional part of brain | 4.88e-14 | 46 |
neurectoderm | 3.94e-13 | 64 |
neural plate | 3.94e-13 | 64 |
presumptive neural plate | 3.94e-13 | 64 |
anterior neural tube | 5.30e-13 | 40 |
regional part of forebrain | 7.78e-13 | 39 |
forebrain | 7.78e-13 | 39 |
future forebrain | 7.78e-13 | 39 |
ectoderm-derived structure | 7.10e-12 | 95 |
ectoderm | 7.10e-12 | 95 |
presumptive ectoderm | 7.10e-12 | 95 |
cerebral cortex | 6.71e-11 | 21 |
cerebral hemisphere | 6.71e-11 | 21 |
pallium | 6.71e-11 | 21 |
ecto-epithelium | 1.21e-10 | 73 |
pre-chordal neural plate | 4.32e-10 | 49 |
regional part of cerebral cortex | 4.65e-09 | 17 |
structure with developmental contribution from neural crest | 2.81e-07 | 92 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.